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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055689 ID=TCONS_00055689|Name=TCONS_00055689|organism=Clytia hemisphaerica|type=transcript|length=1059bp
ttttacaGGAAAATAAATACGataaaaagaaaagcaatattatgaataaa
gaaatcaaagatgaaCAAAAAGTGAATTCGGTTTACATCAAGATTGGTTC
AAAGGATTCGATTTTAGATTTCTTTGCAGTGGAAAAGCATGAATTTGTTG
ATGCAAACATTGATGATGATATACCATTGAAGATAAAGATTGAAGAGGAA
AATAATTCTTTGTCCCCTGTCGAAGAGGTATCAGATAACCACTTTAAATG
TacttcttttttcaatattaaaaTTGAACTTGATGAAATAATTCCCCCAA
CAAACTTGACAATAAATGCCACTAATTTACAAGTAGAAAATGCAGAAACC
AGGGAAAGGAAAAATAATCTTGCCCCAAAAAGGagtaaaagaaattttat
ttgcaAAGAGTGTGGTAAAGACTTTCAGTTCTACTGTCATTTTAAGAAAC
ATCTTAGAATTCACACTGGCGAAAGACCTTTCaagtgtcaagaatgtggt
aaaaagTTTTCTCAACGGTGTAACTTGATACGACATTCAAACATACACAA
TGGAATCAAGTCATTTAAATGTAAGGAATGTGGTAGATGCTTTGCACGAA
AAGATACTTTGAATATTCACATCAAGAGTCATAAACGGAAAACACATGTC
CATATTGAAGAACAAGTCAATGCTTTCCTATGTAACAAATGTAATAAATG
TTTTAACAGTTTAAGTCATTTGACTGCTCATGTTAAAATCCACTCCGAAG
AAATAGTTCCGTCGGATGGTAAAAGTGAATCCAAAGAATTATCAACTAAA
AAACATCAAGATCTAAATCTATTGGATGTCGCTAGTTTGATTGTAGAGAA
CGAAGAGAGGAGGGTAAGGAAGATCGATCATTCCAAATATTGAGTATATT
TTATGTGGAGCTGATATTATGCGAAAAATAGAGTACTTTTACAAGGTAGT
TGttgtatattttattttatgttttatattttaCGCAATACAGCGTTTTG
TAGATTGTTATTTCGACTAAAATCTTCAATACACTGCATTGTACGAAAAT
TTAACAAGC Run BLAST on NCBI protein sequence of TCONS_00055689-protein >TCONS_00055689-protein ID=TCONS_00055689-protein|Name=TCONS_00055689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
LQENKYDKKKSNIMNKEIKDEQKVNSVYIKIGSKDSILDFFAVEKHEFVD
ANIDDDIPLKIKIEEENNSLSPVEEVSDNHFKCTSFFNIKIELDEIIPPT
NLTINATNLQVENAETRERKNNLAPKRSKRNFICKECGKDFQFYCHFKKH
LRIHTGERPFKCQECGKKFSQRCNLIRHSNIHNGIKSFKCKECGRCFARK
DTLNIHIKSHKRKTHVHIEEQVNAFLCNKCNKCFNSLSHLTAHVKIHSEE
IVPSDGKSESKELSTKKHQDLNLLDVASLIVENEERRVRKIDHSKY Run BLAST on NCBI transcript from alignment at scaffold_256:49577..50635 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055689 ID=TCONS_00055689|Name=TCONS_00055689|organism=Clytia hemisphaerica|type=transcript|length=1059bp|location=Sequence derived from alignment at scaffold_256:49577..50635 (Clytia hemisphaerica)
GCTTGTTAAATTTTCGTACAATGCAGTGTATTGAAGATTTTAGTCGAAAT
AACAATCTACAAAACGCTGTATTGCGtaaaatataaaacataaaataaaa
tatacaaCAACTACCTTGTAAAAGTACTCTATTTTTCGCATAATATCAGC
TCCACATAAAATATACTCAATATTTGGAATGATCGATCTTCCTTACCCTC
CTCTCTTCGTTCTCTACAATCAAACTAGCGACATCCAATAGATTTAGATC
TTGATGTTTTTTAGTTGATAATTCTTTGGATTCACTTTTACCATCCGACG
GAACTATTTCTTCGGAGTGGATTTTAACATGAGCAGTCAAATGACTTAAA
CTGTTAAAACATTTATTACATTTGTTACATAGGAAAGCATTGACTTGTTC
TTCAATATGGACATGTGTTTTCCGTTTATGACTCTTGATGTGAATATTCA
AAGTATCTTTTCGTGCAAAGCATCTACCACATTCCTTACATTTAAATGAC
TTGATTCCATTGTGTATGTTTGAATGTCGTATCAAGTTACACCGTTGAGA
AAActttttaccacattcttgacacttGAAAGGTCTTTCGCCAGTGTGAA
TTCTAAGATGTTTCTTAAAATGACAGTAGAACTGAAAGTCTTTACCACAC
TCTTtgcaaataaaatttcttttactCCTTTTTGGGGCAAGATTATTTTT
CCTTTCCCTGGTTTCTGCATTTTCTACTTGTAAATTAGTGGCATTTATTG
TCAAGTTTGTTGGGGGAATTATTTCATCAAGTTCAAttttaatattgaaa
aaagaagtACATTTAAAGTGGTTATCTGATACCTCTTCGACAGGGGACAA
AGAATTATTTTCCTCTTCAATCTTTATCTTCAATGGTATATCATCATCAA
TGTTTGCATCAACAAATTCATGCTTTTCCACTGCAAAGAAATCTAAAATC
GAATCCTTTGAACCAATCTTGATGTAAACCGAATTCACTTTTTGttcatc
tttgatttctttattcataatattgcttttctttttatCGTATTTATTTT
CCtgtaaaa Coding sequence (CDS) from alignment at scaffold_256:49577..50635 >TCONS_00055689 ID=TCONS_00055689|Name=TCONS_00055689|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_256:49577..50635 (Clytia hemisphaerica)
TCAATATTTGGAATGATCGATCTTCCTTACCCTCCTCTCTTCGTTCTCTA
CAATCAAACTAGCGACATCCAATAGATTTAGATCTTGATGTTTTTTAGTT
GATAATTCTTTGGATTCACTTTTACCATCCGACGGAACTATTTCTTCGGA
GTGGATTTTAACATGAGCAGTCAAATGACTTAAACTGTTAAAACATTTAT
TACATTTGTTACATAGGAAAGCATTGACTTGTTCTTCAATATGGACATGT
GTTTTCCGTTTATGACTCTTGATGTGAATATTCAAAGTATCTTTTCGTGC
AAAGCATCTACCACATTCCTTACATTTAAATGACTTGATTCCATTGTGTA
TGTTTGAATGTCGTATCAAGTTACACCGTTGAGAAAActttttaccacat
tcttgacacttGAAAGGTCTTTCGCCAGTGTGAATTCTAAGATGTTTCTT
AAAATGACAGTAGAACTGAAAGTCTTTACCACACTCTTtgcaaataaaat
ttcttttactCCTTTTTGGGGCAAGATTATTTTTCCTTTCCCTGGTTTCT
GCATTTTCTACTTGTAAATTAGTGGCATTTATTGTCAAGTTTGTTGGGGG
AATTATTTCATCAAGTTCAAttttaatattgaaaaaagaagtACATTTAA
AGTGGTTATCTGATACCTCTTCGACAGGGGACAAAGAATTATTTTCCTCT
TCAATCTTTATCTTCAATGGTATATCATCATCAATGTTTGCATCAACAAA
TTCATGCTTTTCCACTGCAAAGAAATCTAAAATCGAATCCTTTGAACCAA
TCTTGATGTAAACCGAATTCACTTTTTGttcatctttgatttctttattc
ataatattgcttttctttttatCGTATTTATTTTCCtgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055689-exon-scaffold_256-1491911889:49577..50635 | TCONS_00055689-exon-scaffold_256-1491911889:49577..50635 | Clytia hemisphaerica | exon |
| TCONS_00055689-exon-scaffold_256-1510915933:49577..50635 | TCONS_00055689-exon-scaffold_256-1510915933:49577..50635 | Clytia hemisphaerica | exon |
| TCONS_00055689-exon-scaffold_256-1575043694:49577..50635 | TCONS_00055689-exon-scaffold_256-1575043694:49577..50635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_256 | supercontig | scaffold_256:49577..50635 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00055689 vs. Swiss-Prot (Human)
Match: ZN500 (Zinc finger protein 500 OS=Homo sapiens GN=ZNF500 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 3.340e-27 Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 3
Query: 384 SKRNFICKECGKDFQFYCHFKKHLRIHTGERPFKCQECGKKFSQRCNLIRHSNIHNGIKSFKCKECGRCFARKDTLNIHIKSHKRKTHVHIEEQVNAFLCNKCNKCFNSLSHLTAHVKIHSEE---IVPSDGKSESKELSTKKHQDLNL 821
+ + + C ECGK F H KH R HTGERP+KC CGK FS R N H +H G K + C ECG+ F++ +L IH ++H + + C +C K FN+ SH +AH + H+ E P+ G+ + KHQ ++
Sbjct: 321 ADKPYTCPECGKGFSKTSHLTKHQRTHTGERPYKCLVCGKGFSDRSNFSTHQRVHTGEKPYPCPECGKRFSQSSSLVIHRRTHSGE---------RPYACTQCGKRFNNSSHFSAHRRTHTGEKPYTCPACGRGFRRGTDLHKHQRTHM 460
The following BLAST results are available for this feature:
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