TCONS_00055682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055682
Unique NameTCONS_00055682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055682 ID=TCONS_00055682|Name=TCONS_00055682|organism=Clytia hemisphaerica|type=transcript|length=879bp
AAAATTCATGTTATTAATTTTATATATATAAAGGTTCTCAAAGAAAGTTG
ACTTGGCCAATTCTAAAAAGTTGTCGCTGAtatcaaaagtgaaagaaaga
cTAATGAAGGAGTTTGGGGAATATGATTCCGTGAAGCAATACGTTACCCC
TAAAGGACACAAGAAGCTGGAAACGACCTGTCCTTACCGAGATTGCCCTA
CGGGGTTCTATGGACCAAATATCGCTACCCACCTCACGAGCAAGCACCAC
TTGTGGGATAAGGAAATGGCTCAGATGGAGCAAAATTATCGCCACAGGAT
GTACAATTGGTGCACTCGATTAAAGGCCCATGATAGCACAAGACCGAAGT
TGTGCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACTCATTTAAGA
AGCAAACCACATAAAATCAAGGACGCAGCCCAGATTAACATTGAAACCCA
AGCCTGCCAACGTAAGATGAAAGATTTCCTCAACTTCCGTGATTCATTTC
CAAGAATGAAACACAACACGTTACCATCAACTTTATCTTCATTCGAAACA
AGTACGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTCAAG
tccaaagaaaagaaagactgggtatgtcataatattttgcacaTTAAAGC
ATCAAGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGTCAT
TCATTATTAAGTCCAATCCATCTTTGAAAACGTGAATGAAATTGTACTTG
AATGTGGAAGACTTTGGCAAACCATTAAGAATAGGGCAGGATATAGGGCA
AAACTTATAGTTTACGGGTCACTGCTTTTTTCTTATACAGTTCATTGAAA
TCTTTATCGACGGTAACATCAAGTTCGCG
Run BLAST on NCBI

protein sequence of TCONS_00055682-protein

>TCONS_00055682-protein ID=TCONS_00055682-protein|Name=TCONS_00055682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MKEFGEYDSVKQYVTPKGHKKLETTCPYRDCPTGFYGPNIATHLTSKHHL
WDKEMAQMEQNYRHRMYNWCTRLKAHDSTRPKLCRGCNKFYDRLDTHLRS
KPHKIKDAAQINIETQACQRKMKDFLNFRDSFPRMKHNTLPSTLSSFETS
TSRRSSISTAKEHTSSPKKRKTGYVIIFCTLKHQGLFRTFTKVSLFSSHS
LLSPIHL
Run BLAST on NCBI

transcript from alignment at scaffold_256:89849..91480-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055682 ID=TCONS_00055682|Name=TCONS_00055682|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at scaffold_256:89849..91480- (Clytia hemisphaerica)
AAAATTCATGTTATTAATTTTATATATATAAAGGTTCTCAAAGAAAGTTG
ACTTGGCCAATTCTAAAAAGTTGTCGCTGATATCAAAAGTGAAAGAAAGA
CTAATGAAGGAGTTTGGGGAATATGATTCCGTGAAGGTAAGGGATAGGGT
CTTGCTTTCATCCTTTTCGTTTTCACTTTCATGTCATCCTTGCATAATCA
ATTTTCTAATTTTATCTTGTCACTTCCGTTCTAGTTTTAAGTTTGTTTGT
TTATTTATTGATTTTTTTCATTTATTTATTTGTCATCTTTCGCAGCGAAC
TGGATGAGACGGTGACTGAGTTGCTCAAAAAGAATAGCCCTTATTCCATG
GCCAGTCATTTTAAATTTAAAATCGTGATATTATTGTTATTACAGCAATA
CGTTACCCCTAAAGGNCAAAAAGAATAGCCCTTATTCCATGGCCAGTCAT
TTTAAATCTAAAATCGTGTTATTATTGTTATTACAGCAATACGTTACCCC
TAAAGGACACAAGAAGCTGGAAACGACCTGTCCTTACCGAGATTGCCCTA
CGGGGTTCTATGGACCAAATATCGCTACCCACCTCACGAGCAAGCACCAC
TTGTGGGATAAGGAAATGGCTCAGATGGAGCAAAATTATCGCCACAGGTA
CTTCATTTTAATTTAATCGAAAACAGACACCCATGGTATCGAGATAACTG
TATTTTCTATTATTGACACCTCAGAAGTGAGCTCAGCCCTAATATTTTTA
TTCATACAAAGAAAGAATGGAATCTCGATCTCCTTTGTAGGATAAATATT
TCATATCACTGTATAGGATCATTTTTTTTCAAGATATATTTCATTCTTTA
CACAGGATGTACAATTGGTGCACTCGATTAAAGGCCCATGATAGCACAAG
ACCGAAGTTGTGCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACTC
ATTTAAGAAGCAAACCACATAAAATCAAGGACGCAGCCCAGATTAACATT
GAAACCCAAGCCTGCCAACGTAAGATGAAAGATTTCCTCAACTTCCGTGA
TTCATTTCCAAGAATGAAACACAACACGTAAGTATATGAATTTCCTTCAT
TTTCTGTTTCGCAGAACTTGTAAATAAACTTTTAAGAGTGCAGATGGGCT
TGGTTTAGCTATAATTACTTTTTTTCTTTTTCCAATGGAAAGTATTGAGT
TAGTAACTGACTTAATATATTCATTGATCTTATTGCAAAGAAACACATTT
TGTTTTTTTAATCTTTATATAGGTTACCATCAACTTTATCTTCATTCGAA
ACAAGTACGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTC
AAGTCCAAAGAAAAGAAAGACTGGGTATGTCATAATATTTTGCACATTAA
AGCATCAAGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGT
CATTCATTATTAAGTCCAATCCATCTTTGAAAACGTGAATGAAATTGTAC
TTGAATGTGGAAGACTTTGGCAAACCATTAAGAATAGGGCAGGATATAGG
GCAAAACTTATAGTTTACGGGTCACTGCTTTTTTCTTATACAGTTCATTG
AAATCTTTATCGACGGTAACATCAAGTTCGCG

Coding sequence (CDS) from alignment at scaffold_256:89849..91480-

>TCONS_00055682 ID=TCONS_00055682|Name=TCONS_00055682|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_256:89849..91480- (Clytia hemisphaerica)
GTTACCATCAACTTTATCTTCATTCGAAACAAGTACGTCCAGGCGTAGTT
CAATTTCAACGGCAAAAGAACATACGTCAAGTCCAAAGAAAAGAAAGACT
GGGTATGTCATAATATTTTGCACATTAAAGCATCAAGGCTTATTTAGAAC
CTTTACTAAGGTTTCACTCTTTTCAAGTCATTCATTATTAAGTCCAATCC
ATCTTTGAGATGTACAATTGGTGCACTCGATTAAAGGCCCATGATAGCAC
AAGACCGAAGTTGTGCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATA
CTCATTTAAGAAGCAAACCACATAAAATCAAGGACGCAGCCCAGATTAAC
ATTGAAACCCAAGCCTGCCAACGTAAGATGAAAGATTTCCTCAACTTCCG
TGATTCATTTCCAAGAATGAAACACAACACCAATACGTTACCCCTAAAGG
ACACAAGAAGCTGGAAACGACCTGTCCTTACCGAGATTGCCCTACGGGGT
TCTATGGACCAAATATCGCTACCCACCTCACGAGCAAGCACCACTTGTGG
GATAAGGAAATGGCTCAGATGGAGCAAAATTATCGCCACAGATGAAGGAG
TTTGGGGAATATGATTCCGTGAAGGTTACCATCAACTTTATCTTCATTCG
AAACAAGTACGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACG
TCAAGTCCAAAGAAAAGAAAGACTGGGTATGTCATAATATTTTGCACATT
AAAGCATCAAGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAA
GTCATTCATTATTAAGTCCAATCCATCTTTGAGATGTACAATTGGTGCAC
TCGATTAAAGGCCCATGATAGCACAAGACCGAAGTTGTGCCGGGGTTGCA
ACAAGTTTTATGACCGTCTAGATACTCATTTAAGAAGCAAACCACATAAA
ATCAAGGACGCAGCCCAGATTAACATTGAAACCCAAGCCTGCCAACGTAA
GATGAAAGATTTCCTCAACTTCCGTGATTCATTTCCAAGAATGAAACACA
ACACCAATACGTTACCCCTAAAGGACACAAGAAGCTGGAAACGACCTGTC
CTTACCGAGATTGCCCTACGGGGTTCTATGGACCAAATATCGCTACCCAC
CTCACGAGCAAGCACCACTTGTGGGATAAGGAAATGGCTCAGATGGAGCA
AAATTATCGCCACAGATGAAGGAGTTTGGGGAATATGATTCCGTGAAGGT
TACCATCAACTTTATCTTCATTCGAAACAAGTACGTCCAGGCGTAGTTCA
ATTTCAACGGCAAAAGAACATACGTCAAGTCCAAAGAAAAGAAAGACTGG
GTATGTCATAATATTTTGCACATTAAAGCATCAAGGCTTATTTAGAACCT
TTACTAAGGTTTCACTCTTTTCAAGTCATTCATTATTAAGTCCAATCCAT
CTTTGAGATGTACAATTGGTGCACTCGATTAAAGGCCCATGATAGCACAA
GACCGAAGTTGTGCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACT
CATTTAAGAAGCAAACCACATAAAATCAAGGACGCAGCCCAGATTAACAT
TGAAACCCAAGCCTGCCAACGTAAGATGAAAGATTTCCTCAACTTCCGTG
ATTCATTTCCAAGAATGAAACACAACACCAATACGTTACCCCTAAAGGAC
ACAAGAAGCTGGAAACGACCTGTCCTTACCGAGATTGCCCTACGGGGTTC
TATGGACCAAATATCGCTACCCACCTCACGAGCAAGCACCACTTGTGGGA
TAAGGAAATGGCTCAGATGGAGCAAAATTATCGCCACAGATGAAGGAGTT
TGGGGAATATGATTCCGTGAAGGTTACCATCAACTTTATCTTCATTCGAA
ACAAGTACGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTC
AAGTCCAAAGAAAAGAAAGACTGGGTATGTCATAATATTTTGCACATTAA
AGCATCAAGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGT
CATTCATTATTAAGTCCAATCCATCTTTGAGATGTACAATTGGTGCACTC
GATTAAAGGCCCATGATAGCACAAGACCGAAGTTGTGCCGGGGTTGCAAC
AAGTTTTATGACCGTCTAGATACTCATTTAAGAAGCAAACCACATAAAAT
CAAGGACGCAGCCCAGATTAACATTGAAACCCAAGCCTGCCAACGTAAGA
TGAAAGATTTCCTCAACTTCCGTGATTCATTTCCAAGAATGAAACACAAC
ACCAATACGTTACCCCTAAAGGACACAAGAAGCTGGAAACGACCTGTCCT
TACCGAGATTGCCCTACGGGGTTCTATGGACCAAATATCGCTACCCACCT
CACGAGCAAGCACCACTTGTGGGATAAGGAAATGGCTCAGATGGAGCAAA
ATTATCGCCACAGATGAAGGAGTTTGGGGAATATGATTCCGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035037XLOC_035037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055682-exon-scaffold_256-1575043694:91345..91480TCONS_00055682-exon-scaffold_256-1575043694:91345..91480Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1575043694:90834..90994TCONS_00055682-exon-scaffold_256-1575043694:90834..90994Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1575043694:90404..90625TCONS_00055682-exon-scaffold_256-1575043694:90404..90625Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1575043694:89849..90208TCONS_00055682-exon-scaffold_256-1575043694:89849..90208Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1510915933:91345..91480TCONS_00055682-exon-scaffold_256-1510915933:91345..91480Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1510915933:90834..90994TCONS_00055682-exon-scaffold_256-1510915933:90834..90994Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1510915933:90404..90625TCONS_00055682-exon-scaffold_256-1510915933:90404..90625Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1510915933:89849..90208TCONS_00055682-exon-scaffold_256-1510915933:89849..90208Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1491911889:91345..91480TCONS_00055682-exon-scaffold_256-1491911889:91345..91480Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1491911889:90834..90994TCONS_00055682-exon-scaffold_256-1491911889:90834..90994Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1491911889:90404..90625TCONS_00055682-exon-scaffold_256-1491911889:90404..90625Clytia hemisphaericaexon
TCONS_00055682-exon-scaffold_256-1491911889:89849..90208TCONS_00055682-exon-scaffold_256-1491911889:89849..90208Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055682-proteinTCONS_00055682-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:89849..91480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158856	0.0516364	0	0	0.357043	0.225712	0.136156	0.143668	0	0	0.0536473	0.141063	0.277847	0.226743	0.906778	1.21718	0.962012	0.584388	0.456342	0.509623	0.460359	0	0	0.176872	0.256311	0.285939	0.0818356	0.524023	0.396349	0.403786
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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