TCONS_00055681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055681
Unique NameTCONS_00055681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055681 ID=TCONS_00055681|Name=TCONS_00055681|organism=Clytia hemisphaerica|type=transcript|length=680bp
CTTTAAgtgtgaagaatgtggtaaactCTTTACCCAAAAAAAGAACttga
aagaacatttcaaaactCATACTGGAGAAAAACCTTTCAAGTGTGAAGAA
TGTGGTATACACTTCAGACAAAAAGGCAGCTTGGCTATCCATTTGAAAAT
TCATGcaggtgaaaataattttaaatgtgaagaatgtggtaagaTCTTTA
CACAAAAAGGCAGCCTGAAAAGACATTTGAGAACTCACACAGgagaaaaa
caatttgaatGCCAAGAGTGTGGTAAATGCTTTATGCAAAAGGGTACCTT
GAAAAGACATTTGAGAACTCACACAGGAGAAAGACAaatttgaatgtCAA
GAGTGTGGTAAATGATGGAGGNAAAGGGTACCTTGAAAAGACATTTGAGA
ACTCACACAGgagaaaaacaatttgaatGTCAATAGTGTGGTAAATGCTT
TATGCAAAAGGGTACCTTGAAAACTTATACGAGAACTCATGATGGAGGAA
AAATGTGGTAAAACGTTTAGATGCAAAAAACATCTCTCAAGACATCACAA
TTGAATTCACAAAAAGGAATAAAACTTACTTATGCAGATTTATATGATAT
ACCCATTTATGAATTTAGTTTATAACTTttaacctgtgtttgtccgttcg
tccgttcatctgttaccaacttttctcggg
Run BLAST on NCBI

protein sequence of TCONS_00055681-protein

>TCONS_00055681-protein ID=TCONS_00055681-protein|Name=TCONS_00055681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKI
HAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTL
KRHLRTHTGERQI
Run BLAST on NCBI

transcript from alignment at scaffold_256:23202..24225-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055681 ID=TCONS_00055681|Name=TCONS_00055681|organism=Clytia hemisphaerica|type=transcript|length=1024bp|location=Sequence derived from alignment at scaffold_256:23202..24225- (Clytia hemisphaerica)
CTTTAAGTGTGAAGAATGTGGTAAACTCTTTACCCAAAAAAAGAACTTGA
AAGAACATTTCAAAACTCATACTGGAGAAAAACCTTTCAAGTGTGAAGAA
TGTGGTATACACTTCAGACAAAAAGGCAGCTTGGCTATCCATTTGAAAAT
TCATGCAGGTGAAAATAATTTTAAATGTGAAGAATGTGGTAAGATCTTTA
CACAAAAAGGCAGCCTGAAAAGACATTTGAGAACTCACACAGGAGAAAAA
CAATTTGAATGCCAAGAGTGTGGTAAATGCTTTATGCAAAAGGGTACCTT
GAAAAGACATTTGAGAACTCACACAGGAGAAAGACAATTTGAATGTCAAT
AGTGTGGTAAATGCTTTATGCAAAAGGGTACCTTGAAAACTCATACGAGA
ACTCATGATGGAGGAAAAATGTGGTAAAACTTTTAGATGCAAAAAACATC
TCTCAAGACATCACAATTGAATTCACAAAAAGGAATAAAACTTACTTATG
CAGATTTATATGATATACCCATTTATGAATTTAGTTTATAAATTGTAACC
TGTGTTTGTCTGTTTGTCCGTTCTGTTACCAACTTTTCTCGGGGTCNAAT
TTGAATGTCAAGAGTGTGGCAAATGCTTTATGCAAAAGGGTACCTTGAAA
AGACATTTGAGAACTCACACAGGAAAAAACAATTTGAATGTCAAGAGTGT
GGTAAATGATGGAGGNAAAGGGTACCTTGAAAAGACATTTGAGAACTCAC
ACAGGAGAAAAACAATTTGAATGTCAATAGTGTGGTAAATGCTTTATGCA
AAAGGGTACCTTGAAAACTTATACGAGAACTCATGATGGAGGAAAAATGT
GGTAAAACGTTTAGATGCAAAAAACATCTCTCAAGACATCACAATTGAAT
TCACAAAAAGGAATAAAACTTACTTATGCAGATTTATATGATATACCCAT
TTATGAATTTAGTTTATAACTTTTAACCTGTGTTTGTCCGTTCGTCCGTT
CATCTGTTACCAACTTTTCTCGGG

Coding sequence (CDS) from alignment at scaffold_256:23202..24225-

>TCONS_00055681 ID=TCONS_00055681|Name=TCONS_00055681|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_256:23202..24225- (Clytia hemisphaerica)
AATTTGATTTAAGTGTGAAGAATGTGGTAAACTCTTTACCCAAAAAAAGA
ACTTGAAAGAACATTTCAAAACTCATACTGGAGAAAAACCTTTCAAGTGT
GAAGAATGTGGTATACACTTCAGACAAAAAGGCAGCTTGGCTATCCATTT
GAAAATTCATGCAGGTGAAAATAATTTTAAATGTGAAGAATGTGGTAAGA
TCTTTACACAAAAAGGCAGCCTGAAAAGACATTTGAGAACTCACACAGGA
GAAAAACAATTTGAATGCCAAGAGTGTGGTAAATGCTTTATGCAAAAGGG
TACCTTGAAAAGACATTTGAGAACTCACACAGGAGAAAGACAAATTTGAT
TTAAGTGTGAAGAATGTGGTAAACTCTTTACCCAAAAAAAGAACTTGAAA
GAACATTTCAAAACTCATACTGGAGAAAAACCTTTCAAGTGTGAAGAATG
TGGTATACACTTCAGACAAAAAGGCAGCTTGGCTATCCATTTGAAAATTC
ATGCAGGTGAAAATAATTTTAAATGTGAAGAATGTGGTAAGATCTTTACA
CAAAAAGGCAGCCTGAAAAGACATTTGAGAACTCACACAGGAGAAAAACA
ATTTGAATGCCAAGAGTGTGGTAAATGCTTTATGCAAAAGGGTACCTTGA
AAAGACATTTGAGAACTCACACAGGAGAAAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035036XLOC_035036Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055681-proteinTCONS_00055681-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055681-exon-scaffold_256-1575043694:23890..24225TCONS_00055681-exon-scaffold_256-1575043694:23890..24225Clytia hemisphaericaexon
TCONS_00055681-exon-scaffold_256-1575043694:23202..23545TCONS_00055681-exon-scaffold_256-1575043694:23202..23545Clytia hemisphaericaexon
TCONS_00055681-exon-scaffold_256-1510915933:23890..24225TCONS_00055681-exon-scaffold_256-1510915933:23890..24225Clytia hemisphaericaexon
TCONS_00055681-exon-scaffold_256-1510915933:23202..23545TCONS_00055681-exon-scaffold_256-1510915933:23202..23545Clytia hemisphaericaexon
TCONS_00055681-exon-scaffold_256-1491911889:23890..24225TCONS_00055681-exon-scaffold_256-1491911889:23890..24225Clytia hemisphaericaexon
TCONS_00055681-exon-scaffold_256-1491911889:23202..23545TCONS_00055681-exon-scaffold_256-1491911889:23202..23545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:23202..24225 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.45494	2.07009	2.08367	0.662141	0.428566	0.920059	1.10511	0.578115	0.303584	0.831816	0	0.275613	0.0822804	0.00414725	0	0	0.293531	0	0	0	0	0	0.995637	1.85051	2.6582	2.41989	0.103285	0.197866	1.12581	0.508144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00055681 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 5.839e-48
Identity = 84/169 (49.70%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:    2 FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            +KC+ECGK F  K  L++H +THTGEKP+KC +CG  F QK  L  H +IH GE  +KC  CG+ F+QK +L+ H RTHTGEK ++C+ECGK F QK  L+ H RTHTGE+    +        K  L++H RTHTGEK + C  CG+ F QK  L+ + RTH G K +
Sbjct:  506 YKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPY 674

HSP 2 Score: 166.777 bits (421), Expect = 2.352e-47
Identity = 81/165 (49.09%), Postives = 108/165 (65.45%), Query Frame = 2 
Query:    2 FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDG 496
            +KC +CGK F QK  L+ H + HTGEKP+KC  CG  F QK +L +H + H GE  ++CEECGK F QK +L+ H RTHTGEK +EC ECGK F +K  L++H RTHTGE+    ++       K  L+ H RTHTGEK ++C  CG+ F QK +L+ + + H G
Sbjct:  534 YKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698

HSP 3 Score: 157.532 bits (397), Expect = 5.473e-44
Identity = 83/169 (49.11%), Postives = 103/169 (60.95%), Query Frame = 2 
Query:    2 FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            ++C ECGK F++K  L++H +THTGEKP+KC+ C   F  K  L IH + H GE  F+C ECGK F  K  L  H RTHTGEK FEC ECGK F     L+ H RTHTGER           + K  L++H RTHTGEK ++C  CGK F QK  L+ + R H G K +
Sbjct:  394 YECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPY 562

HSP 4 Score: 155.221 bits (391), Expect = 4.006e-43
Identity = 82/169 (48.52%), Postives = 103/169 (60.95%), Query Frame = 2 
Query:    2 FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            F+C ECGK F  K  L  H +THTGEKPF+C ECG  F     L  H + H GE  +KC+ECGK F  K  L++H RTHTGEK ++C +CGK F QK  L+ H R HTGE+    +        K  L+ H RTHTGEK ++C+ CGK F QK  L+ + RTH G K +
Sbjct:  450 FECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPY 618

HSP 5 Score: 136.346 bits (342), Expect = 2.658e-36
Identity = 75/169 (44.38%), Postives = 97/169 (57.40%), Query Frame = 2 
Query:    2 FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            ++  ECGK  +   +L    K+HTGEKP++C ECG  F +K  L  H + H GE  +KC+ C K F+ K  L+ H RTHTGEK FEC ECGK F  K  L  H RTHTGE+    +           L+ H RTHTGE+ ++C  CGK F  K  L+ + RTH G K +
Sbjct:  366 YEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPY 534

HSP 6 Score: 118.627 bits (296), Expect = 4.139e-30
Identity = 66/164 (40.24%), Postives = 85/164 (51.83%), Query Frame = 2 
Query:   17 CGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            C + F+ +     H K H   KP++  ECG        L    K H GE  ++C ECGK F++K  L++H RTHTGEK ++C  C K F  K  L+ H RTHTGE+             K  L  H RTHTGEK FEC  CGK F     L+ + RTH G + +
Sbjct:  343 CTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPY 506

HSP 7 Score: 110.153 bits (274), Expect = 3.454e-27
Identity = 64/165 (38.79%), Postives = 85/165 (51.52%), Query Frame = 2 
Query:   14 ECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI*MSRVW*MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 508
            E GK F +   L  H +TH  +K      C   F  + + ++H K+H     ++  ECGK  +    L    ++HTGEK +EC ECGK F +K  L++H RTHTGE+             K  L+ H RTHTGEK FEC  CGK F  K  L  + RTH G K +
Sbjct:  314 EYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPF 478
The following BLAST results are available for this feature:
BLAST of TCONS_00055681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7825.839e-4849.70Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 ... [more]
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