TCONS_00055680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055680
Unique NameTCONS_00055680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055680 ID=TCONS_00055680|Name=TCONS_00055680|organism=Clytia hemisphaerica|type=transcript|length=1375bp
tggtcctaaaaaataaaataaacaactaCCTTGTAAAAATACTCTATTTT
TCGCATCATATCAGCTGCACATAAAATATACTCAATACTTCGAATAATCG
ATATTCTTTAACCTCGTCTCTTCGTTCTCGACAATCAAACAAGCAACATC
CAATAAATTTAGATCTTGATGTTGGATTCACTTTTACCATCCGACAGAAA
AATTTCTTCGGAGTGGATTTTAACATGAGCAGTCAAATGACTTAAACTGT
TAAAACATTTATTATATTTGTTACAGTAAAGCATtgtcttcttcttcaat
ttgGACATGTTTTTTCAGTTTATGACTCATGATGTGAAAATTCAAAGTAT
CTTTTCTGGAAAAGCACTTATCACATTCCTTACATTTAGATGATTTGATT
CCATCGTGTACGCTTGAATGTCGTATCAAATTACCTCGTTGAGAAAATcg
tttaccacattcttcacatttAAAAGGTTTGATTTCACTATGTAAGTAAA
TCTGTATATAAGTTACCTCTTTCAGagaaacatttaccacattcttggcA
CTTAAAAGGTTTTTCTCCAGTATGTATTCTaatgtgaaattttaaaattt
ctttcctttgaaAACATTTACCACACTTTACCACAATTTACCACTGGCTT
TTGTCCAGTATGTATTCTCATGTgaacttttaaactttcttttttcagaa
aatatttaccacattcttcacatttGAATGACTTTTCTTCGGTGTGTATT
CTTTTATGTTTCTTTAAAGAACCCTTTGTTTTAAAGTATTTACCGCATTC
TTCACATTTAAATGGTCTTATGCTACTATGCACTATAGGATGGTGTGTTA
GGgcaaaacatttaccacattcttgacacttGAAAGATCTTTCGCCAGTG
TGAATTCTAAGATATTTCTTCAAATCACAGTTGAATTTGAAGGATTTACC
ACACTCTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTGACAAGATTAT
TTTTCATTGTCTTGGTTATAGGATTTTCTACTTGTAAATTGGTGGCATAT
GTTGTTAAGTTCGTTGGTGGAAGTATTTCATCGAGTTCAATTTTAATATC
AAAATAATCTGGTTGATGCTGAGAATCGGATACTTCTTCGAAAGGGACCA
AAGAATTATTTTCCTCTTCAATCTTTATCTTCAATGAAATATCATCATCT
ATGTTTGTATCAACAAATTCATGTTTTTCCTCTCCCAAGAAATCTAAAAA
AGCATCCTCTGTACCAATCTTGAGTGTAACCGAACTCATCTCATTTTTGT
CACGTTCCATTTCGTTGGAAAGCTCGTCTATTTCACTTTTAATATTAATA
GTTTTCTTTTAACTGTATTTATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_256:53088..54462+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055680 ID=TCONS_00055680|Name=TCONS_00055680|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at scaffold_256:53088..54462+ (Clytia hemisphaerica)
tggtcctaaaaaataaaataaacaactaCCTTGTAAAAATACTCTATTTT
TCGCATCATATCAGCTGCACATAAAATATACTCAATACTTCGAATAATCG
ATATTCTTTAACCTCGTCTCTTCGTTCTCGACAATCAAACAAGCAACATC
CAATAAATTTAGATCTTGATGTTGGATTCACTTTTACCATCCGACAGAAA
AATTTCTTCGGAGTGGATTTTAACATGAGCAGTCAAATGACTTAAACTGT
TAAAACATTTATTATATTTGTTACAGTAAAGCATtgtcttcttcttcaat
ttgGACATGTTTTTTCAGTTTATGACTCATGATGTGAAAATTCAAAGTAT
CTTTTCTGGAAAAGCACTTATCACATTCCTTACATTTAGATGATTTGATT
CCATCGTGTACGCTTGAATGTCGTATCAAATTACCTCGTTGAGAAAATcg
tttaccacattcttcacatttAAAAGGTTTGATTTCACTATGTAAGTAAA
TCTGTATATAAGTTACCTCTTTCAGagaaacatttaccacattcttggcA
CTTAAAAGGTTTTTCTCCAGTATGTATTCTaatgtgaaattttaaaattt
ctttcctttgaaAACATTTACCACACTTTACCACAATTTACCACTGGCTT
TTGTCCAGTATGTATTCTCATGTgaacttttaaactttcttttttcagaa
aatatttaccacattcttcacatttGAATGACTTTTCTTCGGTGTGTATT
CTTTTATGTTTCTTTAAAGAACCCTTTGTTTTAAAGTATTTACCGCATTC
TTCACATTTAAATGGTCTTATGCTACTATGCACTATAGGATGGTGTGTTA
GGgcaaaacatttaccacattcttgacacttGAAAGATCTTTCGCCAGTG
TGAATTCTAAGATATTTCTTCAAATCACAGTTGAATTTGAAGGATTTACC
ACACTCTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTGACAAGATTAT
TTTTCATTGTCTTGGTTATAGGATTTTCTACTTGTAAATTGGTGGCATAT
GTTGTTAAGTTCGTTGGTGGAAGTATTTCATCGAGTTCAATTTTAATATC
AAAATAATCTGGTTGATGCTGAGAATCGGATACTTCTTCGAAAGGGACCA
AAGAATTATTTTCCTCTTCAATCTTTATCTTCAATGAAATATCATCATCT
ATGTTTGTATCAACAAATTCATGTTTTTCCTCTCCCAAGAAATCTAAAAA
AGCATCCTCTGTACCAATCTTGAGTGTAACCGAACTCATCTCATTTTTGT
CACGTTCCATTTCGTTGGAAAGCTCGTCTATTTCACTTTTAATATTAATA
GTTTTCTTTTAACTGTATTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035033XLOC_035033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055680-exon-scaffold_256-1491911889:53088..54462TCONS_00055680-exon-scaffold_256-1491911889:53088..54462Clytia hemisphaericaexon
TCONS_00055680-exon-scaffold_256-1510915933:53088..54462TCONS_00055680-exon-scaffold_256-1510915933:53088..54462Clytia hemisphaericaexon
TCONS_00055680-exon-scaffold_256-1575043694:53088..54462TCONS_00055680-exon-scaffold_256-1575043694:53088..54462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:53088..54462 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.899745	1.16192	0.331512	0.479637	0	0	0.217037	0.0784364	0.102534	0.0317595	0.123306	0.0727159	0.0404719	0	0.0345548	0	0.0451657	0.0348255	0	0	0.0528024	0.0860957	0.613256	0.45962	0.368844	0.864326	0	0.075728	0.102879	0.242641
Blast
[Close]
BLAST of TCONS_00055680 vs. Swiss-Prot (Human)
Match: ZN737 (Zinc finger protein 737 OS=Homo sapiens GN=ZNF737 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 7.935e-50
Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = -3 
Query:  621 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCFA----LTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGKVW 968
            FKC+ECGK+F ++  L  + RIHTGE+ +KC++CGK F+    LT H I+HS  +P+KCEECGK FK   +L  HK IHT EK +KCEECGK F +   L  H  IH+G+KP     CGK +
Sbjct:  201 FKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSRFSYLTAHKIIHSGEKPYKCEECGKAFKRSSNLTTHKIIHTGEKPYKCEECGKAFKRSSILTAHKIIHSGEKPYKCEECGKAF 322

HSP 2 Score: 55.4546 bits (132), Expect = 7.935e-50
Identity = 28/73 (38.36%), Postives = 40/73 (54.79%), Query Frame = -2 
Query:  277 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEEEDNAL 495
            +HS  KP+KCEECGK F+   +L  H  +H G K  KC+EC + F    +L  H + H  ++  + EE   A 
Sbjct:  362 IHSGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGEAFKYSSSLTTHKIIHTGQQPFKCEECGKAF 434

HSP 3 Score: 49.2914 bits (116), Expect = 7.935e-50
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = -1 
Query:  503 KCGKCFQRKEILKFHIRIHTGEKPFKCQECGKCFSERGNLYT 628
            +CGK F+   +L  H RIHTGEKP+KC+ECG+ F    +L T
Sbjct:  317 ECGKAFKHPSVLTTHKRIHTGEKPYKCEECGRAFKYFSSLTT 358

HSP 4 Score: 30.4166 bits (67), Expect = 7.935e-50
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = -3 
Query:  204 CNKYNKCFNSLSHLTAHVKIHSEE 275
            C +  K FNS SHLTAH +IH+ E
Sbjct:  455 CEECGKAFNSSSHLTAHKRIHTGE 478

HSP 5 Score: 119.783 bits (299), Expect = 9.594e-44
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = -3 
Query:  621 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCFA----LTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGKVW 968
            +KC+ECGK+FK + +L  +  IHTGE+ +KC+ECGK F     LT H I+HS  +P+KCEECGK FK    L  HKRIHT EK +KCEECG+ F    SL  H  IH+G+KP     CGK +
Sbjct:  257 YKCEECGKAFKRSSNLTTHKIIHTGEKPYKCEECGKAFKRSSILTAHKIIHSGEKPYKCEECGKAFKHPSVLTTHKRIHTGEKPYKCEECGRAFKYFSSLTTHKIIHSGEKPYKCEECGKAF 378

HSP 6 Score: 49.6766 bits (117), Expect = 9.594e-44
Identity = 28/73 (38.36%), Postives = 36/73 (49.32%), Query Frame = -2 
Query:  277 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEEEDNAL 495
            +H+  +PFKCEECGK F     L  H  +H G K  KC+EC K F+    L  H   H  +K  + E    A 
Sbjct:  418 IHTGQQPFKCEECGKAFKCFSILTTHKRIHTGEKPYKCEECGKAFNSSSHLTAHKRIHTGEKPYKCERCGKAF 490

HSP 7 Score: 47.3654 bits (111), Expect = 9.594e-44
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = -1 
Query:  503 KCGKCFQRKEILKFHIRIHTGEKPFKCQECGKCFSERGNLYT 628
            +CGK F     L  H RIHTGEKP+KC+ECG+ F    +L T
Sbjct:  373 ECGKAFNWSSHLTTHKRIHTGEKPYKCEECGEAFKYSSSLTT 414

HSP 8 Score: 124.02 bits (310), Expect = 3.277e-38
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = -3 
Query:  609 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGKVW*MFS 968
            +KC+ECGK+FK    L  + RIHTGE+ +KC+ECG+ F    +LT H I+HS  +P+KCEECGK F     L  HKRIHT EK +KCEECG+ F    SL  H  IHTGQ+P     CGK +  FS
Sbjct:  313 YKCEECGKAFKHPSVLTTHKRIHTGEKPYKCEECGRAFKYFSSLTTHKIIHSGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGEAFKYSSSLTTHKIIHTGQQPFKCEECGKAFKCFS 438

HSP 9 Score: 53.5286 bits (127), Expect = 3.277e-38
Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = -2 
Query:  292 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEE 495
            +H+  KP+KCEECGK F+   +L  H  +H G K  KC+ C K F R   L  H   H  +K  + EE
Sbjct:  446 IHTGEKPYKCEECGKAFNSSSHLTAHKRIHTGEKPYKCERCGKAFKRSFILTRHKRIHTGEKPYKCEE 513

HSP 10 Score: 125.946 bits (315), Expect = 1.199e-37
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = -3 
Query:  621 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGKVW 968
            +KC+ECGK+F ++  L  + RIHTGE+ +KC+ECG+ F    +LT H I+H+  +PFKCEECGK FK    L  HKRIHT EK +KCEECGK F     L  H RIHTG+KP     CGK +
Sbjct:  369 YKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGEAFKYSSSLTTHKIIHTGQQPFKCEECGKAFKCFSILTTHKRIHTGEKPYKCEECGKAFNSSSHLTAHKRIHTGEKPYKCERCGKAF 490

HSP 11 Score: 49.6766 bits (117), Expect = 1.199e-37
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -1 
Query:  503 KCGKCFQRKEILKFHIRIHTGEKPFKCQECGKCFSERGNLYT 628
            +CGK F+R  IL  H RIHTGEKP+KC+ECGK F     L T
Sbjct:  485 RCGKAFKRSFILTRHKRIHTGEKPYKCEECGKGFKCPSTLTT 526

HSP 12 Score: 96.6709 bits (239), Expect = 5.366e-32
Identity = 63/147 (42.86%), Postives = 82/147 (55.78%), Query Frame = -3 
Query:  582 NNLVTKERGQSFKCKECGKSF-KFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGKVW*MFSKERNFKISH 1001
            N  +T  + + F+C +  K   KF+   +  +R HTG++ FKC ECGK F     LT H  +H+  +PFKCEECGK F     L  HKRIHT EK +KCE+CGK F +   L  H  IH+G+KP     CGK +   S     KI H
Sbjct:  134 NQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIR-HTGKKPFKCIECGKAFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSRFSYLTAHKIIHSGEKPYKCEECGKAFKRSSNLTTHKIIH 279

HSP 13 Score: 53.9138 bits (128), Expect = 5.366e-32
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = -2 
Query:  277 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEEEDNAL 495
            +HS  KP+KCEECGK F     L  H  +H G K  KC+EC + F    +L  H + H  +K  + EE   A 
Sbjct:  306 IHSGEKPYKCEECGKAFKHPSVLTTHKRIHTGEKPYKCEECGRAFKYFSSLTTHKIIHSGEKPYKCEECGKAF 378

HSP 14 Score: 26.5646 bits (57), Expect = 5.366e-32
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -3 
Query:  204 CNKYNKCFNSLSHLTAHVKIHSEE 275
            C +  K FN  SHLT H +IH+ E
Sbjct:  371 CEECGKAFNWSSHLTTHKRIHTGE 394

HSP 15 Score: 117.087 bits (292), Expect = 3.270e-28
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = -3 
Query:  627 FKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGK---CFA-LTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQKPVV--NCGK 968
            +KC+ECG++FK++  L  +  IHTG++ FKC+ECGK   CF+ LT H  +H+  +P+KCEECGK F +   L  HKRIHT EK +KCE CGK F +   L  H RIHTG+KP     CGK
Sbjct:  397 YKCEECGEAFKYSSSLTTHKIIHTGQQPFKCEECGKAFKCFSILTTHKRIHTGEKPYKCEECGKAFNSSSHLTAHKRIHTGEKPYKCERCGKAFKRSFILTRHKRIHTGEKPYKCEECGK 516

HSP 16 Score: 114.005 bits (284), Expect = 3.387e-27
Identity = 61/113 (53.98%), Postives = 75/113 (66.37%), Query Frame = -3 
Query:  648 QSFKCKECGKSFKFNCDLKKYLRIHTGERSFKCQECGKCF----ALTHHPIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHTEEKSFKCEECGKYFLKKESLKVHMRIHTGQK 974
            Q FKC+ECGK+FK    L  + RIHTGE+ +KC+ECGK F     LT H  +H+  +P+KCE CGK FK    L +HKRIHT EK +KCEECGK F    +L  H  IHTG+K
Sbjct:  423 QPFKCEECGKAFKCFSILTTHKRIHTGEKPYKCEECGKAFNSSSHLTAHKRIHTGEKPYKCERCGKAFKRSFILTRHKRIHTGEKPYKCEECGKGFKCPSTLTTHKVIHTGEK 535

HSP 17 Score: 61.2326 bits (147), Expect = 2.951e-19
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = -2 
Query:  277 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEEEDNAL 495
            +HS  KP+KCEECGK F +  NL  H  +H G K  KC+EC K F R   L  H + H  +K  + EE   A 
Sbjct:  250 IHSGEKPYKCEECGKAFKRSSNLTTHKIIHTGEKPYKCEECGKAFKRSSILTAHKIIHSGEKPYKCEECGKAF 322

HSP 18 Score: 51.9878 bits (123), Expect = 2.951e-19
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = -1 
Query:  503 VKCGKCFQRKEILKFHIRIHTGEKPFKCQECGKCFSERGNLYT 631
            ++CGK F +   L  H +IHTGEKPFKC+ECGK F+   +L T
Sbjct:  176 IECGKAFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTT 218

HSP 19 Score: 20.0162 bits (40), Expect = 2.951e-19
Identity = 10/24 (41.67%), Postives = 12/24 (50.00%), Query Frame = -3 
Query:  204 CNKYNKCFNSLSHLTAHVKIHSEE 275
            C +  + F   S LT H  IHS E
Sbjct:  343 CEECGRAFKYFSSLTTHKIIHSGE 366

HSP 20 Score: 52.373 bits (124), Expect = 5.321e-16
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = -2 
Query:  277 LHSEIKPFKCEECGKRFSQRGNLIRHSSVHDGIKSSKCKECDKCFSRKDTLNFHIMSHKLKKHVQIEEEDNAL 495
            +H+  KP+KCEECG+ F    +L  H  +H G K  KC+EC K F+    L  H   H  +K  + EE   A 
Sbjct:  334 IHTGEKPYKCEECGRAFKYFSSLTTHKIIHSGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGEAF 406

HSP 21 Score: 48.9062 bits (115), Expect = 5.321e-16
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = -1 
Query:  503 KCGKCFQRKEILKFHIRIHTGEKPFKCQECGKCFSERGNLYT 628
            +CGK F+R  IL  H  IH+GEKP+KC+ECGK F     L T
Sbjct:  289 ECGKAFKRSSILTAHKIIHSGEKPYKCEECGKAFKHPSVLTT 330

HSP 22 Score: 21.1718 bits (43), Expect = 5.321e-16
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3 
Query:  204 CNKYNKCFNSLSHLTAHVKIHSEE 275
            C +  K F   S LT H +IH+ E
Sbjct:  427 CEECGKAFKCFSILTTHKRIHTGE 450
The following BLAST results are available for this feature:
BLAST of TCONS_00055680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7377.935e-5051.64Zinc finger protein 737 OS=Homo sapiens GN=ZNF737 ... [more]
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