TCONS_00055673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055673
Unique NameTCONS_00055673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055673 ID=TCONS_00055673|Name=TCONS_00055673|organism=Clytia hemisphaerica|type=transcript|length=824bp
TTACTATGTTTTTGTAAGAAATGCTTTTCAAGGAACTCTTTTGTAGTATA
ACATACGCCACATTTAttacatttaaaatatttgcttGGTGAATCATTGG
TTCGGCTCATCCCATTTGCTGCTCTACTTTCGGTAAATtgtttaccacat
tcttgatcCTTTCCTGTATGAGACCTCAAGTGAATGTTCAAGCACGATTT
GTAAGTAAaggatttaccacattcttcacattgAAAAGGTCTTTCTCCTG
TGTGAGTTCTTAAATGGACATTCAAGTTATATTTTTGCGTAAAGTGTTTG
CCACAAACAGCATAATTTAGATTATTAATTACATGATGTTTTTGAACGAA
ATGTTGATCAAGGAACTCCTTTGATGTATAACAAGCACCACAGTCATtac
actcaaaataattcttggaaTTATCGGCGCCTTCTTTTATTCGTTCCTTT
TCGCTTTCTACAATCGAACTCACGATTTCTGTTAAATAATCAGTATTTGA
CGATTCTTCTGCAGCaaaggttgaaatttcatcaaattcaattttgataT
CAATGGACGAATCAATTTGCAGACTTGCTGTCGTAGCATTACCATCAATA
CTAACAAAATCATAATCCTTCTCCTCGATTTTGACTTTCACGGTGTCCAA
CTCATTCCCAGCGATATTTCTATTCTCAATATTGTTTACATTCtcaattt
cttcttcaaatttgAAGCAAATGGATTCAATATTTTCGTGAAAACATATT
TGTTCTTCTTGTTCAACTTTAATTATTTGTTCCATATCAATAAAAGGTTc
tcatttgtttgttttaaattttcc
Run BLAST on NCBI

transcript from alignment at scaffold_256:22010..22833+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055673 ID=TCONS_00055673|Name=TCONS_00055673|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at scaffold_256:22010..22833+ (Clytia hemisphaerica)
TTACTATGTTTTTGTAAGAAATGCTTTTCAAGGAACTCTTTTGTAGTATA
ACATACGCCACATTTAttacatttaaaatatttgcttGGTGAATCATTGG
TTCGGCTCATCCCATTTGCTGCTCTACTTTCGGTAAATtgtttaccacat
tcttgatcCTTTCCTGTATGAGACCTCAAGTGAATGTTCAAGCACGATTT
GTAAGTAAaggatttaccacattcttcacattgAAAAGGTCTTTCTCCTG
TGTGAGTTCTTAAATGGACATTCAAGTTATATTTTTGCGTAAAGTGTTTG
CCACAAACAGCATAATTTAGATTATTAATTACATGATGTTTTTGAACGAA
ATGTTGATCAAGGAACTCCTTTGATGTATAACAAGCACCACAGTCATtac
actcaaaataattcttggaaTTATCGGCGCCTTCTTTTATTCGTTCCTTT
TCGCTTTCTACAATCGAACTCACGATTTCTGTTAAATAATCAGTATTTGA
CGATTCTTCTGCAGCaaaggttgaaatttcatcaaattcaattttgataT
CAATGGACGAATCAATTTGCAGACTTGCTGTCGTAGCATTACCATCAATA
CTAACAAAATCATAATCCTTCTCCTCGATTTTGACTTTCACGGTGTCCAA
CTCATTCCCAGCGATATTTCTATTCTCAATATTGTTTACATTCtcaattt
cttcttcaaatttgAAGCAAATGGATTCAATATTTTCGTGAAAACATATT
TGTTCTTCTTGTTCAACTTTAATTATTTGTTCCATATCAATAAAAGGTTc
tcatttgtttgttttaaattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035034XLOC_035034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055673-exon-scaffold_256-1491911889:22010..22833TCONS_00055673-exon-scaffold_256-1491911889:22010..22833Clytia hemisphaericaexon
TCONS_00055673-exon-scaffold_256-1510915933:22010..22833TCONS_00055673-exon-scaffold_256-1510915933:22010..22833Clytia hemisphaericaexon
TCONS_00055673-exon-scaffold_256-1575043694:22010..22833TCONS_00055673-exon-scaffold_256-1575043694:22010..22833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:22010..22833 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22911	3.25511	2.01588	1.46093	0.351643	0.395276	0.43605	0.28908	0.439289	0	0.793432	0.311104	0	0	0	0.0777369	0.320645	0.209742	0.122646	0	0.187658	0.537011	3.25194	3.2159	0	1.10018	0.269669	4.00905e-06	2.21405	1.75966
Blast
[Close]
BLAST of TCONS_00055673 vs. Swiss-Prot (Human)
Match: ZN846 (Zinc finger protein 846 OS=Homo sapiens GN=ZNF846 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.344e-22
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = -1 
Query:    9 FECNDCGACYTSKEFLDQHFVQKHHVINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTESRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQK 407
            +EC +CG  + +   L QH V+ H          CGK FTQ   L+ HLRTHTGE+  +C+ECGK+F   + LN+H+R+HTG+     +ECGK F  S   N  +RT+   +K ++C KCG  +T    L KH   K
Sbjct:  394 YECKECGKAFNNSSMLSQH-VRIHTGEKPYECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYSTYLNVHTRTHTG-AKPYECKKCGKNFTQSSALAKHLRTK 528

HSP 2 Score: 87.4261 bits (215), Expect = 2.769e-19
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = -1 
Query:   18 FECNDCGACYTSKEFLDQHFVQKHHVINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTESRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHF 407
            +EC +CG  +    +L +H V+ H          CGK FT+   L +H+RTHTGE+P++C+ECGK+F   S L+ H+R HTG+     +ECGK FT+S   +   RT+ +  K  +C +CG  +     L  H 
Sbjct:  338 YECKECGKAFIHSSYLTKH-VRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKPYECKECGKAFNNSSMLSQHVRIHTGEKPYECKECGKAFTQSSGLSTHLRTH-TGEKACECKECGKAFARSTNLNMHM 469

HSP 3 Score: 85.1149 bits (209), Expect = 1.774e-18
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = -1 
Query:   21 ADNSKNYFECNDCGACYTSKEFLDQHFVQKHHVINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTESRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKH 428
            + N   ++ C +CG  +++   L  H  + H          CGK FTQ   L +H+RTH+GE+P++C+ECGK+FT+ S L  H R H+GK      ECGK FT S       R + +  K ++C +CG  +    +L KH
Sbjct:  219 SHNGDKHYVCKECGKAFSNSSHLIGH-GRIHSGEKPYVCKECGKAFTQSTGLKLHIRTHSGEKPYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIH-TGEKPYECKECGKAFIHSSYLTKH 356

HSP 4 Score: 83.1889 bits (204), Expect = 7.097e-18
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:   21 FECNDCGACYTSKEFLDQHFVQKHHVINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTESRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKH 407
            ++C +CG  +T   +L  H  + H          CGK FT+   L +H+R HTGE+P++C+ECGK+F + S L  H+R H+G+     + CGK FT S       RT+ +  K ++C +CG  +     L +H
Sbjct:  282 YKCKECGKAFTHSSYLTDH-TRIHSGKKPYVCMECGKAFTRSTGLILHMRIHTGEKPYECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTH-TGEKPYECKECGKAFNNSSMLSQH 412
The following BLAST results are available for this feature:
BLAST of TCONS_00055673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN8461.344e-2240.88Zinc finger protein 846 OS=Homo sapiens GN=ZNF846 ... [more]
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