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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055666 ID=TCONS_00055666|Name=TCONS_00055666|organism=Clytia hemisphaerica|type=transcript|length=1521bpRun BLAST on NCBI transcript from alignment at scaffold_256:1759..42896+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055666 ID=TCONS_00055666|Name=TCONS_00055666|organism=Clytia hemisphaerica|type=transcript|length=41138bp|location=Sequence derived from alignment at scaffold_256:1759..42896+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055666 vs. Swiss-Prot (Human)
Match: ZFP37 (Zinc finger protein 37 homolog OS=Homo sapiens GN=ZFP37 PE=2 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 2.305e-21 Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = -1
Query: 1171 ECGKCFSVKRSLNRHLYLHSEIKPFKCEKCGKQFSLRAYLIQHSYIHNKINSFKCKECGKCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1518
ECGK F SL +H+ +H+ KPF+C +CGK FS +++LI H H K +KC ECGK F H + YH++TH E P +C +CGK F + LT H + H+ E
Sbjct: 437 ECGKAFKYSSSLTKHMRIHTGEKPFECNECGKAFSKKSHLIIHQRTHTKEKPYKCNECGKAFGHSSSLTYHMRTHT----------GESPFECNQCGKGFKQIEGLTQHQRVHTGE 542 HSP 2 Score: 83.9593 bits (206), Expect = 5.809e-17 Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = -1
Query: 1171 ECGKCFSVKRSLNRHLYLHSEIKPFKCEKCGKQFSLRAYLIQHSYIHNKINSFKCKECGKCFAHKNGFDYHIKTHKRKKLL------------LQLI------EREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1518
ECGK F SL H+ H+ PF+C +CGK F L QH +H ++C ECGK F+ K+ H +TH +K QL+ EKP +C +CGK F + LT HVK+HSE+
Sbjct: 493 ECGKAFGHSSSLTYHMRTHTGESPFECNQCGKGFKQIEGLTQHQRVHTGEKPYECNECGKAFSQKSHLIVHQRTHTGEKPYECNECEKAFNAKSQLVIHQRSHTGEKPYECNECGKTFKQNASLTKHVKTHSED 626 HSP 3 Score: 83.1889 bits (204), Expect = 8.326e-17 Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = -1
Query: 1171 ECGKCFSVKRSLNRHLYLHSEIKPFKCEKCGKQFSLRAYLIQHSYIHNKINSFKCKECGKCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1518
ECGK F SL H+ H+ P++C +CGK F + L +H IH F+C ECGK F+ K+ H +TH +EKP +C +CGK F S LT H+++H+ E
Sbjct: 409 ECGKSFRYNSSLTEHVRTHTGEIPYECNECGKAFKYSSSLTKHMRIHTGEKPFECNECGKAFSKKSHLIIHQRTHT----------KEKPYKCNECGKAFGHSSSLTYHMRTHTGE 514 HSP 4 Score: 82.8037 bits (203), Expect = 1.152e-16 Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = -1
Query: 1171 IECGKCFSVKRSLNRHLYLHSEIKPFKCEKCGKQFSLRAYLIQHSYIHNKINSFKCKECGKCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1521
I+CGK K +L HL +H+ KP++C +CGK F + LIQH H ++CKECGK F + + H++TH E P +C +CGK F S LT H++ H+ E
Sbjct: 352 IQCGKAHGHKHALTDHLRIHTGEKPYECAECGKTFRHSSNLIQHVRSHTGEKPYECKECGKSFRYNSSLTEHVRTHT----------GEIPYECNECGKAFKYSSSLTKHMRIHTGE 458 The following BLAST results are available for this feature:
BLAST of TCONS_00055666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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