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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055665 ID=TCONS_00055665|Name=TCONS_00055665|organism=Clytia hemisphaerica|type=transcript|length=2197bpRun BLAST on NCBI transcript from alignment at scaffold_256:1759..3955+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055665 ID=TCONS_00055665|Name=TCONS_00055665|organism=Clytia hemisphaerica|type=transcript|length=2197bp|location=Sequence derived from alignment at scaffold_256:1759..3955+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055665 vs. Swiss-Prot (Human)
Match: ZN846 (Zinc finger protein 846 OS=Homo sapiens GN=ZNF846 PE=1 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 1.076e-57 Identity = 96/206 (46.60%), Postives = 140/206 (67.96%), Query Frame = -2
Query: 1171 RNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEKPFKCK*CGKQFSRRSNLIQHSKIHNGIESYKCKVCGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1788
++++CKECGKAF + L H RIH+GE+P+ C++CGK FT+ + L +H++ HS + +KCKECGKAF + L H RIH+G++P+ C CGK FTR + L +H++IHTGEKP++CK CGK F S L +H +IH+G + Y CK CGK F++ + L +H++TH EKP +C +CGK FN+ S L+ HV+ H+ E
Sbjct: 224 KHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHIRTHSGEKPYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIHTGEKPYECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHT----------GEKPYECKECGKAFNNSSMLSQHVRIHTGE 419 HSP 2 Score: 195.667 bits (496), Expect = 8.863e-54 Identity = 93/206 (45.15%), Postives = 130/206 (63.11%), Query Frame = -2
Query: 1177 SKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEKPFKCK*CGKQFSRRSNLIQHSKIHNGIESYKCKVCGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHS 1794
K+ ++C ECGKAF + L H RIHTGE+P++C++CGK F S L HV+IHS + + CK CGKAF + L H R HTGE+P++C+ CGK F S L+ HV+IHTGEKP++CK CGK F++ S L H + H G ++ +CK CGK F++ LN+H++TH EKP C +CGK F + L H ++H+
Sbjct: 306 GKKPYVCMECGKAFTRSTGLILHMRIHTGEKPYECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKPYECKECGKAFNNSSMLSQHVRIHTGEKPYECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHT----------GEKPYACKECGKAFRYSTYLNVHTRTHT 501 HSP 3 Score: 190.66 bits (483), Expect = 4.086e-52 Identity = 92/200 (46.00%), Postives = 126/200 (63.00%), Query Frame = -2
Query: 1183 FICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEKPFKCK*CGKQFSRRSNLIQHSKIHNGIESYKCKVCGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKS 1782
+ CKECGKAF + L +H RIH+GE+ + C+ CGK FTR S L +H++ H+ + ++CKECGKAF + L H RIHTGE+P++C+ CGK FT+ S L+ H++ HTGEK +CK CGK F+R +NL H + H G + Y CK CGK F LN+H +TH KP +C KCGK F S L H+++
Sbjct: 338 YECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKPYECKECGKAFNNSSMLSQHVRIHTGEKPYECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYSTYLNVHTRTHT----------GAKPYECKKCGKNFTQSSALAKHLRT 527 HSP 4 Score: 166.777 bits (421), Expect = 4.693e-44 Identity = 85/197 (43.15%), Postives = 122/197 (61.93%), Query Frame = -2
Query: 1171 KAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEKPFKCK*CGKQFSRRSNLIQHSKIHNGIESYKCKVCGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1761
KAF +L R + HT E+ +C+DC + F QSSL +H++ H+ + + CKECGKAF + L H RIH+GE+P+ C+ CGK FT+ + L +H++ H+GEKP+KCK CGK F+ S L H++IH+G + Y C CGK F++ L +H++ H EKP +C +CGK F S LT HV+ HS E
Sbjct: 177 KAFNQFPNLTRQNKTHTQEKLCECKDCWRTFLNQSSLKLHIRSHNGDKHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHIRTHSGEKPYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIHT----------GEKPYECKECGKAFIHSSYLTKHVRIHSGE 363 HSP 5 Score: 117.472 bits (293), Expect = 1.504e-27 Identity = 73/196 (37.24%), Postives = 104/196 (53.06%), Query Frame = -2
Query: 1177 GKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEKPFKCK*CGKQFSRRSNLIQHSKIHNGIESYKCKVCGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHS 1764
GK F + L H H GE+ + GK + + + K H++ + KC + KAF +L + HT E+ +C+ C + F QSSL +H++ H G+K + CK CGK FS S+LI H +IH+G + Y CK CGK F+Q L +HI+TH EKP +C +CGK F S LT H + HS
Sbjct: 120 GKVFNEHPFLMTHMITHIGEKTSEDNQSGKALRKNFPHSFYKKSHAEGKMPKCVKHEKAFNQFPNLTRQNKTHTQEKLCECKDCWRTFLNQSSLKLHIRSHNGDKHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHIRTH----------SGEKPYKCKECGKAFTHSSYLTDHTRIHS 305 HSP 6 Score: 115.546 bits (288), Expect = 6.968e-27 Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = -2
Query: 1450 FICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLK*HFRIHTGERPFKCQGCGKCFTRQSSLNVHVKIHTGEK 1782
+ CKECGKAF + L H R HTGE+ +C++CGK F R ++LN+H++ H+ + + CKECGKAF+++ L H R HTG +P++C+ CGK FT+ S+L H++ EK
Sbjct: 422 YECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYSTYLNVHTRTHTGAKPYECKKCGKNFTQSSALAKHLRTKACEK 532 The following BLAST results are available for this feature:
BLAST of TCONS_00055665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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