TCONS_00055656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055656
Unique NameTCONS_00055656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055656 ID=TCONS_00055656|Name=TCONS_00055656|organism=Clytia hemisphaerica|type=transcript|length=1191bp
TTCCGTTAATGAACAATATATTTATGAATAATCCGCTATGAATGTTCCAG
TATTAATGTGATATTATTTCCTGTTTAAATTCAGAGAAATGTTCACAACG
AAAACTGAGCAGCTCTCCTAAGACGGTCATTTCGAAGCATTCGGCGGCCC
AGTTGAGTGCTTTGAAAGCCGTTTACGCCGAAAACAAGTACATTGATGGC
GACGGTGCAAAAATTTTATGCAATACCATCAACTTGACGGTGAAACAGAT
TTGTACATGGTTCAACAATGAGAGGGCGAATGAAAAGAAGAAAATGTAAA
GATTTTTAAGCACCACATAAAAACCATAGAACGACGACGAGGGaccgaat
tttttcaaaattataaccAGAGAAGgcatttaaatatttttggatgaaat
ttgaccAATACTCGAGATATCCTCAAAGTTACAAAAATATCTTAAAGGAG
GGAATTgtgttgaaaaaataaaatttattagTAATGTATTCCCAAACTTG
TGCTGTGTCAGGCCTCAAATACAGGCTTTATTGCTTGTTAATCACAATTT
TTGgccaaagatatttttcaattgctAAATTAAGATTCCTGCTATTCCTG
actatgcttaatttttccagtCATCCCCAAGTTAAATATTCgtcaaaatt
cttcaaatatttttcaaaattcttcatttaaaaGTTAGTCTCcataaatt
tgttatttttgtattctTGTCTTGATAAAGCATTTTGTAATCATGGTCTA
GTATTATCAATCATAAATAGTACTACTCTTTCCATTCTTATTGTGTCATA
AGACTTAAAACAAGGAATGACATATAAGCAGTCTGTATCAGTTAAATCAA
GACCAATTTATCTTATTCTGGTGACCATACATAATATGTTTATCAAACAA
CGTACAACTTCAACTTGACTACATATCCAACGTGGTCTGGGTAAAAGTTT
TTACATAACAGTCATAATTCAGTTCTGAGTAGGAATCTTTGATACTTTGA
TCGAAAGTCCAGGAATCCATAATCAAGCCATACAATTCTCTAAAATTTCG
AAGTTATTGTTCTTGCTCATAATATTCTCATACAGGTACACATACACGTC
AACATCTTGAATATGGAATCCTGAATaggtataaaaagaaaagaaagaaa
atttcaaaaactatggtATTTGACTTTCAGACATTTATTGA
Run BLAST on NCBI

transcript from alignment at scaffold_255:739..5193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055656 ID=TCONS_00055656|Name=TCONS_00055656|organism=Clytia hemisphaerica|type=transcript|length=4455bp|location=Sequence derived from alignment at scaffold_255:739..5193- (Clytia hemisphaerica)
TTCCGTTAATGAACAATATATTTATGAATAATCCGCTATGAATGTTCCAG
TATTAATGTGATATTATTTCCTGTTTAAATTCAGAGAAATGTTCACAACG
AAAACTGAGCAGCTCTCCTAAGACGGTCATTTCGAAGCATTCGGCGGCCC
AGTTGAGTGCTTTGAAAGCCGTTTACGCCGAAAACAAGTACATTGATGGC
GACGGTGCAAAAATTTTATGCAATACCATCAACTTGACGGTGAAACAGGT
ATGGCGTGGGATAATTTTTATCAAATTTTAATAAGTGTGGTGGGTTATTC
AAATTCCTATTTGTTCTTACTTTTCGAATACACGTTTTTTTATAAGAACA
TCCAAAACTTTTGAAGCCTTGGAATGTTCTTAACTTTTTTAATTAACTTG
TTCTTAGCATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCT
TATAAAAAAAAACGTGTAAATGATAAAAGAGTGTGTCTCAATTTTCATTT
GCGGAATTTCTTACAACACTTTGTTAGTATTATTTAATGGAGGCTAATGT
TGTTTCTTTACAAGAACACAATCAAAATAGTTAACCAATCGAAGAATTTT
TAGCGGAAACTAATTTTGTTAATTTTAGCGATTTGACGAAATTTTCACTT
TTTCAGTTTTTAAAACATAAACATAAACTTAAATAAATCGCGCTATTATT
TCTACTCGCTAAAATTAATCCACGTGAATTTCTTTGATCGATTAAAAGTA
AAAAGAATATCCACTAAAATTATTTTTTCTCACTAGATTTGTACATGGTT
CAACAATGAGAGGGCGAATGAAAAGAAGAAGTAATGAGATTATATTTGTA
GTTTATTTTTTATATTACATTCATATTCTTCTCCCTTAAACAAAGCTAAG
AAAATGATTTTGTTATGTTGTCTATTTTCTTGTTGTCTATTTCCAATTTT
CGTTAAAAAAGGTCTCAATAGTGTCTGATTGAATAGTTAACCACTCCCCT
ATCTCATAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNACGCCCGCAGCCAAACACCCACGCC
ATAATTTGCGCCCCAAAAGTATTGCCCGGATAAACTACGGAATGTGAAAC
ATACGGAAACTGAAAGACGACAAAACAAAAAAAAAAAAACAGCGAAAAAT
TTTAACCCGCCTCTCACTAATCGCGAAACTATTAAGCCACCTATGCTCCG
CTGCGCTCCGCTCGGTGGCAATTATCCACTTGGATTATTAGTCTCCCTTC
TTCAACGTGGGTTTCGGGTTATGTTTTAAGGGATATTACCCAGACTGTTC
AGATCTACAGACCTAGTAAGCGTACACGTTTTTTTTTTTTCTTTTTTCTA
TAAGAACATCAAAAATTTTTGAAGCCTTGGAATGTTCTTAACTTTTACAG
CTTTAAGCCTCAAAATGTTCCTAACATCGAGCCTAACATGTTCTTATTTT
TGCTAATTCTTGAGTGTTTTTGTCATATTTTCTAAGAAATTGGGTGTTTT
AGTGCCCTAAGAAGCCTAAAATGTTCTTAACTTGTTCTTAGCATTTTGGC
CATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATATAAAAAAACGTG
TATGCATTTTTGGGACACTGTAAAGTTTTTCGGGATTCCTTATGCAAGTG
TGCTTTTTGACTAGAGTAGGCCAAGTTCTGTAAAACCGGGGTATACATCT
TTTATTTCAATTTCTCACCCGGGTTGAGATAATTCAGCTTCAAATTTCTG
GGTTGGCTGGGTGATTTCTTCCCTCGAATAGGCAAACACAAATTATTCTG
CCATAGAATGTAAAGATTTTTAAGCACCACATAAAAACCATAGAACGACG
ACGAGGGACCGAATTTTTTCAAAATTATAACCAGAGAAGGCATTTAAATA
TTTTTGGATGAAATTTGACCAATACTCGAGATATCCTCAAAGTTACAAAA
ATATCTTAAAGGAGGGAATTGTGTTGAAAAAATAAAATTTATTAGTAATG
TATTCCCAAACTTGTGCTGTGTCAGGCCTCAAATACAGGCTTTATTGCTT
GTTAATCACAATTTTTGGCCAAAGATATTTTTCAATTGCTAAATTAAGAT
TCCTGCTATTCCTGACTATGCTTAATTTTTCCAGTCATCCCCAAGTTAAA
TATTCGTCAAAATTCTTCAAATATTTTTCAAAATTCTTCATTTAAAAGTT
AGTCTCCATAAATTTGTTATTTTTGTATTCTTGTCTTGATAAAGCATTTT
GTAATCATGGTCTAGTATTATCAATCATAAATAGTACTACTCTTTCCATT
CTTATTGTGTCATAAGACTTAAAACAAGGAATGACATATAAGCAGTCTGT
ATCAGTTAAATCAAGACCAATTTATCTTATTCTGGTGACCATACATAATA
TGTTTATCAAACAACGTACAACTTCAACTTGACTACATATCCAACGTGGT
CTGGGTAAAAGTTTTTACATAACAGTCATAATTCAGTTCTGAGTAGGAAT
CTTTGATACTTTGATCGAAAGTCCAGGAATCCATAATCAAGCCATACAAT
TCTCTAAAATTTCGAAGTTATTGTTCTTGCTCATAATATTCTCATACAGG
TACACATACACGTCAACATCTTGAATATGGAATCCTGAATAGGTATAAAA
AGAAAAGAAAGAAAATTTCAAAAACTATGGTATTTGACTTTCAGACATTT
ATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035026XLOC_035026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055656-exon-scaffold_255-1575043694:4946..5193TCONS_00055656-exon-scaffold_255-1575043694:4946..5193Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1575043694:4364..4407TCONS_00055656-exon-scaffold_255-1575043694:4364..4407Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1575043694:739..1637TCONS_00055656-exon-scaffold_255-1575043694:739..1637Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1510915933:4946..5193TCONS_00055656-exon-scaffold_255-1510915933:4946..5193Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1510915933:4364..4407TCONS_00055656-exon-scaffold_255-1510915933:4364..4407Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1510915933:739..1637TCONS_00055656-exon-scaffold_255-1510915933:739..1637Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1491911889:4946..5193TCONS_00055656-exon-scaffold_255-1491911889:4946..5193Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1491911889:4364..4407TCONS_00055656-exon-scaffold_255-1491911889:4364..4407Clytia hemisphaericaexon
TCONS_00055656-exon-scaffold_255-1491911889:739..1637TCONS_00055656-exon-scaffold_255-1491911889:739..1637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_255supercontigscaffold_255:739..5193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.507216	0.497809	0.416366	0.514696	5.96223	3.7836	6.17396	7.18169	6.40089	4.83054	9.30868	8.20216	6.46973	6.91086	5.86252	5.69369	4.85382	4.34982	8.31913	5.02347	6.79071	7.64323	5.01137	5.83577	4.39173	5.00288	3.78568	4.25548	4.06182	3.85242
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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