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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055651 ID=TCONS_00055651|Name=TCONS_00055651|organism=Clytia hemisphaerica|type=transcript|length=299bp
CTACCAAACACAATGAGGATGAGCAGTTGCTTACataaattgaaagaagt
ttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGACGTTC
GATCGAAAGGAAACGCCTTGCTAACAAAAGACGAATCTAACAAGGCCATA
ATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGACCAGATGACTC
TCAGTCAACAACAAAAGTTGAATTTCAGCGAAAAGAAGATCGAGAAGCAA
GCGAATCATTTGACCCAACGAAGCTACGCGACCCAGAAAACGTTTTTAA Run BLAST on NCBI transcript from alignment at scaffold_255:36587..38750+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055651 ID=TCONS_00055651|Name=TCONS_00055651|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at scaffold_255:36587..38750+ (Clytia hemisphaerica)
CTACCAAACACAATGAGGATGAGCAGTTGCTTACataaattgaaagaagt
ttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGACGTTC
GATCGAAAGGTATTACTTACCCTTTACTTAACATTCTTTTATAATTGTTC
AATTGCAACAGTGTGCAAGTAAAATATGCTCATTTCAATTTATGACCgaa
acatttttcatattttaatcTTCTATTTTTCAGGAAACGCCTTGCTAACA
AAAGACGAATCTAACAAGGCCATAATCCAGGAAACCCAATCAAATGGAGA
TGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAAAGTTGAATTTC
AGGTTAATGAGGTAATTTTGTTAATGAGTGTACTGTTTATAattacaatc
cgtgccataatatttttgcacttttggctaatttaccatttttcgaaaat
tgaagttcgagcgagaatgtcaattgtAGGCCCTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttttttgtcaatt
tgatGAAACTCTGCATTTTGAAAGATTGACCTATGCAGCTTGGAAATTAA
TTATCTCATTAACAAAAGTCTTTTCCAAAGAAATTCTTTCAGCAGTGGAA
AGAAGAatgatttcttttctttgcattaaaaatttagattttttttatca
ttcttcCAATTTGAAATTAACGTTATTTTTTACTGAAgtaattatgaaaa
aatttacttGATCTCCGATGTTTTAAATCTACACCTTTGCTTACTTATGA
CTTGATATCTCTTGAATCGAAAATTCTTTTGCAATGAATTTTTGACCACA
AAAAGCTTCATGGTTATGCTTTTAACTGGTTTAAAAATTAAGCTTAATAT
ATAGATAGTTTTTTCAGAGCTACCCTTTACTTtttgagtatacttttttg
cggaacacactgtattatttttacatcgttgatgGAAGTCGTTTTTTTAA
GGTCAGCGGTAGAAATATTAATATTAAAATCAGATCAGctggaaatgttt
tttgacattttccattTCGCTCTTTCTTCTCATAAAAACTATTGAGTTGA
TTATAGGGTGAAAAGAACGAAGAACAATGaggaagtttttcaattttaaa
cttttacaattttaaacttttacaatttttgctttACTATAGGTCGTAGA
TAGCTCTAAAAAATACCCGATGACCcatatgaatttttattttttatttt
tggaaaattattttggaattttttaacccacgtgatttttttggacccac
gaacccacgagtaATTTCAACCCACGCGATTTTTTTTNACGtgatttttt
tggacccacgaacccacgagtaATTTCAACCCAcgcgatttttttttgga
cccacgaacccacggacccacgagatattttgacccacggacccacgaac
ccacgagacattttaacccacgaacacccacgagggcacgaacccacgaa
cccacgaacccacgacacgcacgtaaccaacgtaatttagcagactcatt
tttctgatagtggattgtttttataaagaaaagcgtttaataactttttt
atttatttctcaaaaatctatttcaatagtgttgatagtttctcccaata
gatatgctttcatttttctttatttttctgtattttgactagttatgtct
tatgtgtttcattgtttaaatgttcattgattagttggataaccaggtag
gtccataatagtattacttgttttttttccaattaaACCTTACCTTTATG
TTacctttctttttgaaatttcaaattacttCTCATTTTTAAGCGAAAAG
AAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCA
GAAAACGTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055651-exon-scaffold_255-1491911889:36587..36695 | TCONS_00055651-exon-scaffold_255-1491911889:36587..36695 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1510915933:36587..36695 | TCONS_00055651-exon-scaffold_255-1510915933:36587..36695 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1575043694:36587..36695 | TCONS_00055651-exon-scaffold_255-1575043694:36587..36695 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1491911889:36820..36938 | TCONS_00055651-exon-scaffold_255-1491911889:36820..36938 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1510915933:36820..36938 | TCONS_00055651-exon-scaffold_255-1510915933:36820..36938 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1575043694:36820..36938 | TCONS_00055651-exon-scaffold_255-1575043694:36820..36938 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1491911889:38680..38750 | TCONS_00055651-exon-scaffold_255-1491911889:38680..38750 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1510915933:38680..38750 | TCONS_00055651-exon-scaffold_255-1510915933:38680..38750 | Clytia hemisphaerica | exon |
| TCONS_00055651-exon-scaffold_255-1575043694:38680..38750 | TCONS_00055651-exon-scaffold_255-1575043694:38680..38750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_255 | supercontig | scaffold_255:36587..38750 + |
Blast
The following BLAST results are available for this feature:
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