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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055620 ID=TCONS_00055620|Name=TCONS_00055620|organism=Clytia hemisphaerica|type=transcript|length=886bp
CAGACTTATAAAACACCTTTCTCGAAACATGATTGTACACTTTTCTTGAA
CACTTGGTTTAGTATAAATGAGATTAGAAAAAAACAAGGTTTGAAAGACT
CTTTAAATTACACTTGATAGATTATGACATTCGGTTACATGACTTGACAA
TAAGCAAAACAAACGAAAGCGAAAGGTTGGAACAAATGCTAATCGAAACG
TCAGAGAAACTTGGCTCTACCGAGAAGGATTTGGAGTTGACCATTTCCGA
GCTTAACGAAAACAAGAACTTGTTAGAGAAAACTCGAGAGGAATTATCAA
GTACTCTGGACAATTTGAGTCAAACCAGTAGTGATCTACAAGCGACTTGT
CAAGAATTAGCTGACACCAAATCCAATCTTGAGGAAACTGCTAGTCAACT
TGAAGATACCAAGAAAGACCTATCTATGAGTAAGAGTAGTCTTTCTGACA
CTGAACGAAAACTTGACGAGACCAGTCTGGAGAAAGATCAAAAGATCAGC
GATCTGAATGACAAAGTACGATCAGCTGAAGGTCAAATTGCCAATCTTGA
GGAGACCTTGACCAACAGACAGTCGGAACTAAGGGACACTAACGAAACGT
TAAATTCGACACAACACATGTTGAAGGAGAGAACGTCAGTACTGGAAAAG
ACAACGGCAGATCTTGAGACCACTAGATCCAATCTGAGTGAAACTTCAGG
CAAACTTGAAGAGACTGAACAGGCTTTGAAAGAAACCACAGAGAAACTGT
CATCGACTGAATCCTCCTTCAAGTCGACGGCTTCAGAACTGAAAGATACA
TCGAGCAGTCTTTCAGACACGAAAGAGACGCTGCAAACGACTTGCAAGGA
ACTGGAAGAGACCCAATCAACGCTGTCAAGCACCAA Run BLAST on NCBI protein sequence of TCONS_00055620-protein >TCONS_00055620-protein ID=TCONS_00055620-protein|Name=TCONS_00055620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MLIETSEKLGSTEKDLELTISELNENKNLLEKTREELSSTLDNLSQTSSD
LQATCQELADTKSNLEETASQLEDTKKDLSMSKSSLSDTERKLDETSLEK
DQKISDLNDKVRSAEGQIANLEETLTNRQSELRDTNETLNSTQHMLKERT
SVLEKTTADLETTRSNLSETSGKLEETEQALKETTEKLSSTESSFKSTAS
ELKDTSSSLSDTKETLQTTCKELEETQSTLSST Run BLAST on NCBI transcript from alignment at scaffold_253:603714..604599 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055620 ID=TCONS_00055620|Name=TCONS_00055620|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_253:603714..604599 (Clytia hemisphaerica)
TTGGTGCTTGACAGCGTTGATTGGGTCTCTTCCAGTTCCTTGCAAGTCGT
TTGCAGCGTCTCTTTCGTGTCTGAAAGACTGCTCGATGTATCTTTCAGTT
CTGAAGCCGTCGACTTGAAGGAGGATTCAGTCGATGACAGTTTCTCTGTG
GTTTCTTTCAAAGCCTGTTCAGTCTCTTCAAGTTTGCCTGAAGTTTCACT
CAGATTGGATCTAGTGGTCTCAAGATCTGCCGTTGTCTTTTCCAGTACTG
ACGTTCTCTCCTTCAACATGTGTTGTGTCGAATTTAACGTTTCGTTAGTG
TCCCTTAGTTCCGACTGTCTGTTGGTCAAGGTCTCCTCAAGATTGGCAAT
TTGACCTTCAGCTGATCGTACTTTGTCATTCAGATCGCTGATCTTTTGAT
CTTTCTCCAGACTGGTCTCGTCAAGTTTTCGTTCAGTGTCAGAAAGACTA
CTCTTACTCATAGATAGGTCTTTCTTGGTATCTTCAAGTTGACTAGCAGT
TTCCTCAAGATTGGATTTGGTGTCAGCTAATTCTTGACAAGTCGCTTGTA
GATCACTACTGGTTTGACTCAAATTGTCCAGAGTACTTGATAATTCCTCT
CGAGTTTTCTCTAACAAGTTCTTGTTTTCGTTAAGCTCGGAAATGGTCAA
CTCCAAATCCTTCTCGGTAGAGCCAAGTTTCTCTGACGTTTCGATTAGCA
TTTGTTCCAACCTTTCGCTTTCGTTTGTTTTGCTTATTGTCAAGTCATGT
AACCGAATGTCATAATCTATCAAGTGTAATTTAAAGAGTCTTTCAAACCT
TGTTTTTTTCTAATCTCATTTATACTAAACCAAGTGTTCAAGAAAAGTGT
ACAATCATGTTTCGAGAAAGGTGTTTTATAAGTCTG Coding sequence (CDS) from alignment at scaffold_253:603714..604599 >TCONS_00055620 ID=TCONS_00055620|Name=TCONS_00055620|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_253:603714..604599 (Clytia hemisphaerica)
GGTGCTTGACAGCGTTGATTGGGTCTCTTCCAGTTCCTTGCAAGTCGTTT
GCAGCGTCTCTTTCGTGTCTGAAAGACTGCTCGATGTATCTTTCAGTTCT
GAAGCCGTCGACTTGAAGGAGGATTCAGTCGATGACAGTTTCTCTGTGGT
TTCTTTCAAAGCCTGTTCAGTCTCTTCAAGTTTGCCTGAAGTTTCACTCA
GATTGGATCTAGTGGTCTCAAGATCTGCCGTTGTCTTTTCCAGTACTGAC
GTTCTCTCCTTCAACATGTGTTGTGTCGAATTTAACGTTTCGTTAGTGTC
CCTTAGTTCCGACTGTCTGTTGGTCAAGGTCTCCTCAAGATTGGCAATTT
GACCTTCAGCTGATCGTACTTTGTCATTCAGATCGCTGATCTTTTGATCT
TTCTCCAGACTGGTCTCGTCAAGTTTTCGTTCAGTGTCAGAAAGACTACT
CTTACTCATAGATAGGTCTTTCTTGGTATCTTCAAGTTGACTAGCAGTTT
CCTCAAGATTGGATTTGGTGTCAGCTAATTCTTGACAAGTCGCTTGTAGA
TCACTACTGGTTTGACTCAAATTGTCCAGAGTACTTGATAATTCCTCTCG
AGTTTTCTCTAACAAGTTCTTGTTTTCGTTAAGCTCGGAAATGGTCAACT
CCAAATCCTTCTCGGTAGAGCCAAGTTTCTCTGACGTTTCGATTAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055620-exon-scaffold_253-1491911889:603714..604599 | TCONS_00055620-exon-scaffold_253-1491911889:603714..604599 | Clytia hemisphaerica | exon |
| TCONS_00055620-exon-scaffold_253-1510915933:603714..604599 | TCONS_00055620-exon-scaffold_253-1510915933:603714..604599 | Clytia hemisphaerica | exon |
| TCONS_00055620-exon-scaffold_253-1575043694:603714..604599 | TCONS_00055620-exon-scaffold_253-1575043694:603714..604599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:603714..604599 . |
Blast
The following BLAST results are available for this feature:
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