|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055594 ID=TCONS_00055594|Name=TCONS_00055594|organism=Clytia hemisphaerica|type=transcript|length=2287bp
CAATAATAAAATCTGCTGATTTTTACGTTTGCCTAAACTTACTGATAAAA
AGCAACCCTTCACTTTAACACACGTGCACTCCACTCAGAGTTTTGAGACG
TAATGAGAAAAAATTGCTTAGgtcattgaaattttcatacTCAAAGAtag
caatttttttcttttttttcttcaccatGTGCGCAAAAGTAACACCTGGc
aaattttttcttcgccgCCTAACCTTTTGTACAATTTGGCGTTTTAAACG
aaacctttttttttgctgaactTTTTTGAACGAGTCATATAAAGACACAA
AAGAACACTCTTTACATTGTCCAGTGACACATTTGAGCTTTAAaaaacta
ccttatcggggaaaacttcgtcgggaaaaattttcgtcatttgctggttt
tggtaaacgcattaaggtcggggaaaattttcgtcggggaaaaatattcg
taacttggccgaaatttcgtcacttttccccgacgaagttttccccgata
aggtattctcAGCACATTCACATTGGCAACCATTAGAGAAGTATTTTGTC
ATGGACAGTTCTGCCATTGATTTTGTCGCAAGACAATTATTAAGTTCGTT
GGTTTTAAGTCTCagatttaaacaaaatttgcaCAGGCAACAAAATCGTG
CTAACTCATATCTTGATCAAAATTCAGAGATTGAGCTGCGGGTGGGCGTG
TAATAGTAGATTTAGATAACACTCTTGCATTTGTCATCCCATACCGATTA
GTATGAGGGCCTGGTGCTGAATTTTGGTTCTCtctggaaaaaaaaatata
aaattttgattcGGTTGAGGTTGAGCTAAGGGTGTTGTAGGTACTGGACT
CGGTGTTGACCGGTGGTGATAAACAGGATGGCTAGCGGGTGGAAAGGATC
GATAAGCGTGTCGTACTGATCCTTGCTCAGGTTGAATTAAGCATCTTATC
AATGACAAAAAACTATCATCTCGTTCTTTTTGACGAGCGCTCTTTGCTTT
TGGAAAGGTTAAAAGATCATCCGTTGAATTGTCTGTTGCAACAGTTTTTA
AAGCCGCGACAGAATCTTTTATTTCGTTTGATAGAGACTCAGTTTTTGTC
TTCTTTGGTCCTGAAATAGTTGGAGCATAAgacctttttttaccttttca
ttTCGCTCTTGGTTGTGCTGGTCTTGCTTCTGATTGGGATGTCTCGGAGC
TATGAGGAGTCGAGGTGGTTTCATTACTTCCCACAGTAGGTTCTTCATCC
ATTCCTGGTTCAATAAATTGCTCTGGTTGGCAATTATCCATTGAACTGAC
AACGGGAAGCAATTTTCCGAACCAAGTTCCGTAGCCTTTAGATTCTTGAA
ATCTTTTGATTACCGAATCGTTTTAATCTTCATGGACGCATCTCTGCAGG
CACCGACACACCTTTTAAATTTCTCACGTGCCTGCTTTACACTATATTCA
CATTTAGCTTTCCTCAGCTCACACCTTTCTTTTGATTATTCAAGAACCTT
TTCATATTACTTgccatttttcacattttttataCTAGTTATCAACAGTT
TTTCTTTCACCTTATCATCCTCCAAAATGATATCCACCAAATCATCAGTG
TCTGCCTCCGGCCATTTACTTTTCGGTCCTCGCTTCTTTGTCTTGACCAC
TTTCTTGCTTAACTTTTTTCGAATTTGCGCAATTTCTTCTTCGCTGTCGC
TTTCACTATTGTCAGTTTCATCATCACTCTCGTTTCCATCACTCTCCTCA
GCATCAAGATCCTCAATGTTTCCATTGTAATAAGAATCCCAGGAATCCTG
CAggtacaaaaattaaaaacattttactgattttttcctctcttttCTTA
AACATAGCAGCCGATAATTATTATATCTCTTTAAAAATAACACGAAGATA
ATCTTTTGCATCTTATTAACAACTTTTCATCACTCTCGATATGTACAAGA
AAACTATAAGCATAAGAAACACGAATCTAAACAATGTACTTACTCTATCA
CTTTCGCTACAActgtccgccatcttgaaacatgAAAAGAACTTGAGGAT
TGTGCGAGGGCCCGAAGTGCAATCCCGATTTTATGAAAAATCGGAGTCAA
CGATCTAATACTGGGATCCGCTCACTCATGCTTAACTAAAATCATAGCCT
AATGAAACAAAGACCATTATTAATTCTATTTACTGTACTTTTTATCATTA
TTAATTTGATCGAACTactatgttcttaaaatttctaaaattcatTCGAG
CTTTAAGCAAACAAATTATCTCTTGATGCTGCTTGAT Run BLAST on NCBI transcript from alignment at scaffold_253:231952..234238 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055594 ID=TCONS_00055594|Name=TCONS_00055594|organism=Clytia hemisphaerica|type=transcript|length=2287bp|location=Sequence derived from alignment at scaffold_253:231952..234238 (Clytia hemisphaerica)
ATCAAGCAGCATCAAGAGATAATTTGTTTGCTTAAAGCTCGAatgaattt
tagaaattttaagaacatagtAGTTCGATCAAATTAATAATGATAAAAAG
TACAGTAAATAGAATTAATAATGGTCTTTGTTTCATTAGGCTATGATTTT
AGTTAAGCATGAGTGAGCGGATCCCAGTATTAGATCGTTGACTCCGATTT
TTCATAAAATCGGGATTGCACTTCGGGCCCTCGCACAATCCTCAAGTTCT
TTTcatgtttcaagatggcggacagTTGTAGCGAAAGTGATAGAGTAAGT
ACATTGTTTAGATTCGTGTTTCTTATGCTTATAGTTTTCTTGTACATATC
GAGAGTGATGAAAAGTTGTTAATAAGATGCAAAAGATTATCTTCGTGTTA
TTTTTAAAGAGATATAATAATTATCGGCTGCTATGTTTAAGaaaagagag
gaaaaaatcagtaaaatgtttttaatttttgtaccTGCAGGATTCCTGGG
ATTCTTATTACAATGGAAACATTGAGGATCTTGATGCTGAGGAGAGTGAT
GGAAACGAGAGTGATGATGAAACTGACAATAGTGAAAGCGACAGCGAAGA
AGAAATTGCGCAAATTCGAAAAAAGTTAAGCAAGAAAGTGGTCAAGACAA
AGAAGCGAGGACCGAAAAGTAAATGGCCGGAGGCAGACACTGATGATTTG
GTGGATATCATTTTGGAGGATGATAAGGTGAAAGAAAAACTGTTGATAAC
TAGtataaaaaatgtgaaaaatggcAAGTAATATGAAAAGGTTCTTGAAT
AATCAAAAGAAAGGTGTGAGCTGAGGAAAGCTAAATGTGAATATAGTGTA
AAGCAGGCACGTGAGAAATTTAAAAGGTGTGTCGGTGCCTGCAGAGATGC
GTCCATGAAGATTAAAACGATTCGGTAATCAAAAGATTTCAAGAATCTAA
AGGCTACGGAACTTGGTTCGGAAAATTGCTTCCCGTTGTCAGTTCAATGG
ATAATTGCCAACCAGAGCAATTTATTGAACCAGGAATGGATGAAGAACCT
ACTGTGGGAAGTAATGAAACCACCTCGACTCCTCATAGCTCCGAGACATC
CCAATCAGAAGCAAGACCAGCACAACCAAGAGCGAaatgaaaaggtaaaa
aaaggtcTTATGCTCCAACTATTTCAGGACCAAAGAAGACAAAAACTGAG
TCTCTATCAAACGAAATAAAAGATTCTGTCGCGGCTTTAAAAACTGTTGC
AACAGACAATTCAACGGATGATCTTTTAACCTTTCCAAAAGCAAAGAGCG
CTCGTCAAAAAGAACGAGATGATAGTTTTTTGTCATTGATAAGATGCTTA
ATTCAACCTGAGCAAGGATCAGTACGACACGCTTATCGATCCTTTCCACC
CGCTAGCCATCCTGTTTATCACCACCGGTCAACACCGAGTCCAGTACCTA
CAACACCCTTAGCTCAACCTCAACCgaatcaaaattttatattttttttt
ccagaGAGAACCAAAATTCAGCACCAGGCCCTCATACTAATCGGTATGGG
ATGACAAATGCAAGAGTGTTATCTAAATCTACTATTACACGCCCACCCGC
AGCTCAATCTCTGAATTTTGATCAAGATATGAGTTAGCACGATTTTGTTG
CCTGtgcaaattttgtttaaatctGAGACTTAAAACCAACGAACTTAATA
ATTGTCTTGCGACAAAATCAATGGCAGAACTGTCCATGACAAAATACTTC
TCTAATGGTTGCCAATGTGAATGTGCTgagaataccttatcggggaaaac
ttcgtcggggaaaagtgacgaaatttcggccaagttacgaatatttttcc
ccgacgaaaattttccccgaccttaatgcgtttaccaaaaccagcaaatg
acgaaaatttttcccgacgaagttttccccgataaggtagttttTTAAAG
CTCAAATGTGTCACTGGACAATGTAAAGAGTGTTCTTTTGTGTCTTTATA
TGACTCGTTCAAAAAagttcagcaaaaaaaaaggtttCGTTTAAAACGCC
AAATTGTACAAAAGGTTAGGcggcgaagaaaaaatttgCCAGGTGTTACT
TTTGCGCACatggtgaagaaaaaaaagaaaaaaattgctaTCTTTGAgta
tgaaaatttcaatgacCTAAGCAATTTTTTCTCATTACGTCTCAAAACTC
TGAGTGGAGTGCACGTGTGTTAAAGTGAAGGGTTGCTTTTTATCAGTAAG
TTTAGGCAAACGTAAAAATCAGCAGATTTTATTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055594-exon-scaffold_253-1491911889:231952..234238 | TCONS_00055594-exon-scaffold_253-1491911889:231952..234238 | Clytia hemisphaerica | exon |
| TCONS_00055594-exon-scaffold_253-1510915933:231952..234238 | TCONS_00055594-exon-scaffold_253-1510915933:231952..234238 | Clytia hemisphaerica | exon |
| TCONS_00055594-exon-scaffold_253-1575043694:231952..234238 | TCONS_00055594-exon-scaffold_253-1575043694:231952..234238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:231952..234238 . |
Blast
The following BLAST results are available for this feature:
|
