TCONS_00055586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055586
Unique NameTCONS_00055586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055586 ID=TCONS_00055586|Name=TCONS_00055586|organism=Clytia hemisphaerica|type=transcript|length=346bp
CAAATGCatcttatttttcgaaaaccTCAAAACTGTACAAGTGACTCCTC
AAAAGTGGATGCCCAGGAAAAGTTTTCACATTATTTAATTTTATAGATTT
GAATCTTTGAGAACAAGGTGGATGTGCTTAAACCTAGCGTAGAAATTCAG
GCGTTAGAATGGTGATGCTCCTCTCTTCTTGAAAGCTTTGACTTACAGTA
CATCAATATCTTAATATCTGCTCCTTACGCCAATACACCAAAAGAAGTAA
TTACTCTTTCACTCTGAATATCTTTGGCGTACTGTACACCATTTCTAGAC
TGGCTTAATACTTAGGAGCTTAGTATCTCAGGATAAAaaaagcctc
Run BLAST on NCBI

transcript from alignment at scaffold_253:161937..162282

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055586 ID=TCONS_00055586|Name=TCONS_00055586|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_253:161937..162282 (Clytia hemisphaerica)
gaggcttttTTTATCCTGAGATACTAAGCTCCTAAGTATTAAGCCAGTCT
AGAAATGGTGTACAGTACGCCAAAGATATTCAGAGTGAAAGAGTAATTAC
TTCTTTTGGTGTATTGGCGTAAGGAGCAGATATTAAGATATTGATGTACT
GTAAGTCAAAGCTTTCAAGAAGAGAGGAGCATCACCATTCTAACGCCTGA
ATTTCTACGCTAGGTTTAAGCACATCCACCTTGTTCTCAAAGATTCAAAT
CTATAAAATTAAATAATGTGAAAACTTTTCCTGGGCATCCACTTTTGAGG
AGTCACTTGTACAGTTTTGAggttttcgaaaaataagatGCATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034958XLOC_034958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055586-exon-scaffold_253-1491911889:161937..162282TCONS_00055586-exon-scaffold_253-1491911889:161937..162282Clytia hemisphaericaexon
TCONS_00055586-exon-scaffold_253-1510915933:161937..162282TCONS_00055586-exon-scaffold_253-1510915933:161937..162282Clytia hemisphaericaexon
TCONS_00055586-exon-scaffold_253-1575043694:161937..162282TCONS_00055586-exon-scaffold_253-1575043694:161937..162282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:161937..162282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517922	1.76769	0.586418	0	0.349223	1.3798	0.66587	1.24676	0.436443	1.35151	0.524724	1.37973	0.344454	0.357718	0.44114	0.157803	0	0.597764	0	0.288062	0.250378	0.366377	0.296919	0	0.278035	0.248139	0.355087	0.378958	0.862279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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