TCONS_00055573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055573
Unique NameTCONS_00055573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055573 ID=TCONS_00055573|Name=TCONS_00055573|organism=Clytia hemisphaerica|type=transcript|length=2189bp
CAAAAACCCCAAACCTTTCTAAATTTACTATAAGTATATTATATCTCTAA
GCTATATTACGTCTCACAAAGTAAGTTGCAACTGATCAAAAAGGGGAAAG
AGTTTCTACTCTTTTTGTGCTTCTTTTCCttgaaattagattttaatttc
cAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTATGTCGA
GAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTCAACATT
TCAAGCTTCACGATctagaaaataataataaaatatggAAGAGTCACAAG
AAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAACAATTA
AACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAACAGATAA
GGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTC
CAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAA
CTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGGG
TGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCG
TTGCACTGAAGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGAAAT
CACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGAATGTCT
AAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGTTCG
ACTACCTTCCATTAACGGCACTCGTTGACAGTCAAATCTTTTGTTTACAC
GGTGGTTTATCGCCTTCAATCGACACACTTGATCACATTCGTGCACTCGA
CCGTTTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGGT
CTGACCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGA
TACACTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAACGGATT
AACGCTTATCGCTCGTGCTCATCAACTTGTTATGGAGGGTTATAATTGGT
GTCATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATTATTGTTAT
CGGTGTGGTAACcaagccgccattatggaaCTGGACGACGCGCTCAAATA
TTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATGTCA
CTAGACGCACCCCAGACtatttcctataaaaaaacaacaacaacgaaTAT
TCATTGACATTGTGAAAAGCAACTTAGGTCCAACTTAGGTTGAATTTAAA
ACATCTCATTGATGTTTGGAAGGGACAGATTCATGTTTAATGTACAGATT
TGATCAATCAATAGAAGGGTGAATCGCATATTTGTAAATTATGAGTTACC
GTGACCACACCCTCGTTACGTCATCGTGATTCCCTCCGAaagcaaattta
aattttattccTTCTCTCTCCAGATTCACTTATTTTTTAACTGATTAACG
AAAAAAATATAGACAAAGTTTGCCGAGTTGCAGGTCAGCTACCCCTTAGA
GTATCAATAACACTTACCTTGTTTAACTTTCAGTGAAAGCTCCTATACTA
AAATGATTAAGTATTCAACACCAATACCAATCCACTAGGTTCCGAATTTT
ACCCTttacttttataagaattttttgtttcaatctCTTACCTACGTGTT
GTGGTTCTCAACGTTGTTACGTAAAAACCGGATGTCCACGTAAACGTATG
CCTTTTCGTTCCCCAaatgtgtttttattttaacGTGATAATGATTGCTA
GGCCTTTCTAGAttaagaaattttcttttttatgatgatATAGGTTGATG
AAACAACTCTCTCGATGCAgtattttttattactttctcTATACTACTAA
AGAAAATAGATAGATTCTGTTTATGTATCTATTGTAAATTCTAATCATTA
GACCAAAAATCACgttataataaataaaataaaatttcaattgtcttatt
agaTAATAAAgagatgtattttatttatCCTTTGCTAAATCCTCCAAATT
CTGACTCGTTTCAACAACTTGAAGGTTAATTTTTATAACTCTGCTCCAAT
AGTACTAGAGAAGTAAGCAACCTAGAGGTGTCGTCTCTTTGCAGAAAAAC
TGATACCTTACCTAGCCTTTGGAACAAAATGTTTGTAat
Run BLAST on NCBI

transcript from alignment at scaffold_253:1150514..1155216-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055573 ID=TCONS_00055573|Name=TCONS_00055573|organism=Clytia hemisphaerica|type=transcript|length=4703bp|location=Sequence derived from alignment at scaffold_253:1150514..1155216- (Clytia hemisphaerica)
CAAAAACCCCAAACCTTTCTAAATTTACTATAAGTATATTATATCTCTAA
GCTATATTACGTCTCACAAAGTAAGTTGCAACTGATCAAAAAGGGGAAAG
AGTTTCTACTCTTTTTGTGCTTCTTTTCCTTGAAATTAGATTTTAATTTC
CAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTATGTCGA
GAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTCAACATT
TCAAGCTTCACGATCTAGAAAATAATAATAAAATATGGAAGAGTCACAAG
AAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAACAATTA
AACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAACAGATAA
GGTATGTTATATCTCTTCTATTTTGTTTTACTATGATAGTTTTGTAATTT
GATCCAAAATCAATAATAGCATGAAAAGAATGGTTTCGAGGTAAATATTT
ACTGTATTTGTATTTTCATGTTGGATTTTTTAGAAAAAAGTTTTGCCAGT
TTTAATTTTATTTTCCACTCCTTATCCATTTCTACTCCAGGCAAAAGAAA
TATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTCCAGTCACAGTA
TGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAACTCTTCCGTAT
AGGGGGCAAATCACCCGACACCAACTATTTATTCATGGGTGATTACGTAG
ATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCGTTGCACTGAAG
GTTAGAGTCATTGTTTGCCTTTGCAGGCTGCTCTTATTTGAGTAATATTG
GCCATATTTAAATTGTATTTTTTTTTTGCAATTAAAGACACTCCAAAACA
TCTCCCCCTTTCACAAAATCTGGTTCTTTTCGAAGAAGCTATTTTGTTTT
CCTAAATTAGTCGAAATTTTTCTTGAGATCAAATCTCCCCTTCATTATTT
TTTTTCTCCCTTTCTCATCAACTTCATGATTTTTTGAATGCCTATCTATC
AAACTATTAATTAATTTTGCTCTTGTGTCATAACTTTGTTAAATTTTAGG
TACGATATCCAGAAAGAATCACTATTCTTCGCGGAAATCACGAAAGTCGA
CAAATTACACAAGTATACGGGTTTTACGATGAATGTCTAAGGAAATACGG
TAACGCTAATGTTTGGAAATACTTCACGGACTTGTTCGACTACCTTCCAT
TAACGGCACTCGTTGACAGTCAAGTAAGTCCTTTTTACAGCTTCTAAATC
AAGCGAAATTTACCTTAGGCAACAAGCTCTTTCTCGAAGGAGTACATAAA
AAACCTGTTTTCGAATGAGTTTTGACCCTGGAGGGGTAAAGTTAATAACA
AAAAACTCAGAATAACAGAAGCTCTCCTCTTTTTTGAGAGAACATTCGAA
TAAGTGATGTGTAAGGATTTGTATGCCCTTGCGATGCTACCGCAATTTTC
TGTAAATTGTTCGTTTCCTACACAGTGTTCACTGATCAGGGACTTATTTC
TCTTTTCTAGATCTTTTGTTTACACGGTGGTTTATCGCCTTCAATCGACA
CACTTGATCACATTCGTGCACTCGACCGTTTACAAGAAGTACCACACGAA
GGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGACCGTGGAGGTTG
GGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGACAGGATATCTCGG
AAACTTTCAATCATACAAACGGATTAACGCTTATCGCTCGTGCTCATCAA
CTTGTTATGGAGGTGAGTTCTTTTTTAGTACCCTTTTCACCACTCCAAAC
TGCTCCAAACTTACGCTAAGTTACATAGCCTTGTAAATTGATGTCTTTCC
ATACTTTTCACCTTGAAAGCTACCATGAATAGATAAGTTTCAAGAAACTC
TTCATTTAACTCATTCAATCTGATTCAGTTACGATGATAACTTCAAATTA
TACGGATTGTAGGTGAAAAGTTATGCCCCTGCCCCTANCATTTCTACTCC
AGGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGT
CCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGA
ACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGG
GTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTC
GTTGCACTGAAGGTTAGAGTCATTGTTTGCCTTTGCAGGCTGCTCTTATT
TGAGTAATATTGGCCATATTTAAATTGTATTTTTTTTTTGCAATTAAAGA
CACTCCAAAACATCTCCCCCTTTCACAAAATCTGGTTCTTTTCGAAGAAG
CTATTTTGTTTTCCTAAATTAGTCGAAATTTTTCTTGAGATCAAATCTCC
CCTTCATTATTTTTTTTCTCCCTTTCTCATCAACTTCATGATTTTTTGAA
TGCCTATCTATCAAACTATTAATTAATTTTGCTCTTGTGTCATAACTTTG
TTAAATTTTAGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGAAAT
CACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGAATGTCT
AAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGTTCG
ACTACCTTCCATTAACGGCACTCGTTGACAGTCAAGTAAGTCCTTTTTAC
AGCTTCTAAATCAAGCGAAATTTACCTTAGGCAACAAGCTCTTTCTCGAA
GGAGTACATAAAAAACCTGTTTTCGAATGAGTTTTGACCCTGGAGGGGTA
AAGTTAATAACAAAAAACTCAGAATAACAGAAGCTCTCCTCTTTTTTGAG
AGAACATTCGAATAAGTGATGTGTAAGGATTTGTATGCCCTTGCGATGCT
ACCGCAATTTTCTGTAAATTGTTCGTTTCCTACACAGTGTTCACTGATCA
GGGACTTATTTCTCTTTTCTAGATCTTTTGTTTACACGGTGGTTTATCGC
CTTCAATCGACACACTTGATCACATTCGTGCACTCGACCGTTTACAAGAA
GTACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGA
CCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGAC
AGGATATCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTATCGCT
CGTGCTCATCAACTTGTTATGGAGGTGAGTTCTTTTTTAGTACCCTTTTC
ACCACTCCAAACTGCTCCAAACTTACGCTAAGTTACATAGCCTTGTAAAT
TGATGTCTTTCCATACTTTTCACCTTGAAAGCTACCATGAATAGATAAGT
TTCAAGAAACTCTTCATTTAACTCATTCAATCTGATTCAGTTACGATGAT
AACTTCAAATTATACGGATTGTAGGTGAAAAGTTATGCCCCTGCCCCTAG
AAGATTAACTCCCATAAAAGATACAGTTAAAATAATCACACCATTTTTTA
GGGTTATAATTGGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCAC
CTAATTATTGTTATCGGTGTGGTAACCAAGCCGCCATTATGGAACTGGAC
GACGCGCTCAAATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGG
AGAGCCGCATGTCACTAGACGCACCCCAGACTATTTCCTATAAAAAAACA
ACAACAACGAATATTCATTGACATTGTGAAAAGCAACTTAGGTCCAACTT
AGGTTGAATTTAAAACATCTCATTGATGTTTGGAAGGGACAGATTCATGT
TTAATGTACAGATTTGATCAATCAATAGAAGGGTGAATCGCATATTTGTA
AATTATGAGTTACCGTGACCACACCCTCGTTACGTCATCGTGATTCCCTC
CGAAAGCAAATTTAAATTTTATTCCTTCTCTCTCCAGATTCACTTATTTT
TTAACTGATTAACGAAAAAAATATAGACAAAGTTTGCCGAGTTGCAGGTC
AGCTACCCCTTAGAGTATCAATAACACTTACCTTGTTTAACTTTCAGTGA
AAGCTCCTATACTAAAATGATTAAGTATTCAACACCAATACCAATCCACT
AGGTTCCGAATTTTACCCTTTACTTTTATAAGAATTTTTTGTTTCAATCT
CTTACCTACGTGTTGTGGTTCTCAACGTTGTTACGTAAAAACCGGATGTC
CACGTAAACGTATGCCTTTTCGTTCCCCAAATGTGTTTTTATTTTAACGT
GATAATGATTGCTAGGCCTTTCTAGATTAAGAAATTTTCTTTTTTATGAT
GATATAGGTTGATGAAACAACTCTCTCGATGCAGTATTTTTTATTACTTT
CTCTATACTACTAAAGAAAATAGATAGATTCTGTTTATGTATCTATTGTA
AATTCTAATCATTAGACCAAAAATCACGTTATAATAAATAAAATAAAATT
TCAATTGTCTTATTAGATAATAAAGAGATGTATTTTATTTATCCTTTGCT
AAATCCTCCAAATTCTGACTCGTTTCAACAACTTGAAGGTTAATTTTTAT
AACTCTGCTCCAATAGTACTAGAGAAGTAAGCAACCTAGAGGTGTCGTCT
CTTTGCAGAAAAACTGATACCTTACCTAGCCTTTGGAACAAAATGTTTGT
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034947XLOC_034947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055573-exon-scaffold_253-1575043694:1154816..1155216TCONS_00055573-exon-scaffold_253-1575043694:1154816..1155216Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1575043694:1152955..1153164TCONS_00055573-exon-scaffold_253-1575043694:1152955..1153164Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1575043694:1152482..1152655TCONS_00055573-exon-scaffold_253-1575043694:1152482..1152655Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1575043694:1151943..1152194TCONS_00055573-exon-scaffold_253-1575043694:1151943..1152194Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1575043694:1150514..1151665TCONS_00055573-exon-scaffold_253-1575043694:1150514..1151665Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1510915933:1154816..1155216TCONS_00055573-exon-scaffold_253-1510915933:1154816..1155216Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1510915933:1152955..1153164TCONS_00055573-exon-scaffold_253-1510915933:1152955..1153164Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1510915933:1152482..1152655TCONS_00055573-exon-scaffold_253-1510915933:1152482..1152655Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1510915933:1151943..1152194TCONS_00055573-exon-scaffold_253-1510915933:1151943..1152194Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1510915933:1150514..1151665TCONS_00055573-exon-scaffold_253-1510915933:1150514..1151665Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1491911889:1154816..1155216TCONS_00055573-exon-scaffold_253-1491911889:1154816..1155216Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1491911889:1152955..1153164TCONS_00055573-exon-scaffold_253-1491911889:1152955..1153164Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1491911889:1152482..1152655TCONS_00055573-exon-scaffold_253-1491911889:1152482..1152655Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1491911889:1151943..1152194TCONS_00055573-exon-scaffold_253-1491911889:1151943..1152194Clytia hemisphaericaexon
TCONS_00055573-exon-scaffold_253-1491911889:1150514..1151665TCONS_00055573-exon-scaffold_253-1491911889:1150514..1151665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1150514..1155216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.420813	1.63343	0.2685	0	0	0	0	0	0	0	0	0	0	0.462251	0	0	0	0.552807	0	0	0
Blast
[Close]
BLAST of TCONS_00055573 vs. Swiss-Prot (Human)
Match: PP2AB (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 286/305 (93.77%), Postives = 297/305 (97.38%), Query Frame = 3 
Query:  312 GMNKDLDQWIEQLNDCKQLSENQVKNLTDKAKEILSKESNVQDVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDSQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHTNGLTLIARAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDALKYSFLQFDPAPRRGEPHVTRRTPDYFL 1226
               K+LDQW+EQLN+CKQL+ENQV+ L +KAKEIL+KESNVQ+V+CPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD QIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNH NGLTL++RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDD LKYSFLQFDPAPRRGEPHVTRRTPDYFL
Sbjct:    5 AFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00055573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PP2AB0.000e+093.77Serine/threonine-protein phosphatase 2A catalytic ... [more]
back to top