TCONS_00055556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055556
Unique NameTCONS_00055556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055556 ID=TCONS_00055556|Name=TCONS_00055556|organism=Clytia hemisphaerica|type=transcript|length=1459bp
ctttcatgaaatttggtaaTCATTACAGAAATTTGATCTCTCTaaagaaa
tttgacaaaaaaaaaacttcagcgaaaacaacaaaaacatcaaCACAAAC
TTGTAGATTTTTTGTAGTGTGTATATAGTAAAAATAAGGGAAATCACAAA
AAGTTAGTGAGATTTGTATTTGAGTTTTTGTAATGGCAACAAGATTTTGT
ATAGGTTTTGTTATCCTGGTGTGTTTCACTTGTTGTTATGAATCAAGTCA
AGTCTTGACGTCTGGTAGGAAGGCACGAGAGAATATATTGAAACGATTAG
AGAATATTAATTCCattgaagaatttgaaaaagCATTCAacatcaaaaat
ccaaaaagatcTTATTTGAAGAAACGAGGGAATTTATTTCTTGGCAACCT
TCTCGATGATGTTGCACCGCTAGCTTATGGAAGTCCTCGCCCCTGTGTAC
CCAAAGAAACCGTTTATACAATTCCTCACGTACCTGCGAGAGATCGTTAT
ATTCCTGACTGTTTGAATGTCACGCGATGCGGAGGATGTTGTAGCAGCTT
CAAAACGAGCGCAGACATGGAATGTGTTGCGGATCAAACGGAAAGCAAAA
TGGCTAGAGTGTACCATTTTGACAAGTTCAcTGGAGGATATTCGCAAAAA
GTCATTCCTTATGTGAACCATAAATCATGTAAATGTCAATGCAAGACACA
ACCTGAAGATTGCAACCTTCAACAAACTTACGATCCTAACCATTGTAAAT
GTAATTGTAATATCAAAAGTGCTACCTGTCCAAAATTTATGGAGtggtCA
GTATTAGCTTGTCAATGTAAATGCAAACCTCCAAGCACACCTTGTGCACC
AACGCACGCTTGGAACGATCAAACATGTCAATGTGATTGCATACCACGTG
CGTGTGCTCAAGGCTATGGTTTTGATGTCAAAAAATGCACTTGTGCTAAA
CTACAAGTCTAGACGAATTTCATCACAATGAGATTATTTCTGATCAATTT
TTCTTTATGGATAATATTGGGATCAAGGAGCTTATCACAGGCATCGATAT
TTTTGATATCGATAGAATATTTATTGACTTCTATTATACTTTTGGTTAAc
ggttcaaactttaaatgaGACATTACAACCATACTCCATCGATTATTTCA
GATCAATTACAATCATAAAATtccaagatgacgtcatcataatgAATAAT
ACCGACTTTGGTGTGAGACGGGAAAAAATAAACGTCAATTTTCCATGACA
CTTAGCAAATAAGACATTTCACATATTTTTTGAAAGGCTTGACAAAGGAA
ATAGCTTAAATCGGCCTCTGAAACTCCCCTAGGATGTCCAAATGTCAGAA
GTTTAGGATCAGGTGCAGTTAGCGTGGTCACTGGTTGGATTCTTTAGTAG
TGGAGAGCACTGTTAAAGAATATAACCTAATGTCGTTTAACCTAATAATG
TTATAAANN
Run BLAST on NCBI

protein sequence of TCONS_00055556-protein

>TCONS_00055556-protein ID=TCONS_00055556-protein|Name=TCONS_00055556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MATRFCIGFVILVCFTCCYESSQVLTSGRKARENILKRLENINSIEEFEK
AFNIKNPKRSYLKKRGNLFLGNLLDDVAPLAYGSPRPCVPKETVYTIPHV
PARDRYIPDCLNVTRCGGCCSSFKTSADMECVADQTESKMARVYHFDKFT
GGYSQKVIPYVNHKSCKCQCKTQPEDCNLQQTYDPNHCKCNCNIKSATCP
KFMEWSVLACQCKCKPPSTPCAPTHAWNDQTCQCDCIPRACAQGYGFDVK
KCTCAKLQV
Run BLAST on NCBI

transcript from alignment at scaffold_253:1060318..1065881-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055556 ID=TCONS_00055556|Name=TCONS_00055556|organism=Clytia hemisphaerica|type=transcript|length=5564bp|location=Sequence derived from alignment at scaffold_253:1060318..1065881- (Clytia hemisphaerica)
CTTTCATGAAATTTGGTAATCATTACAGAAATTTGATCTCTCTAAAGAAA
TTTGACAAAAAAAAAACTTCAGCGAAAACAACAAAAACATCAACACAAAC
TTGTAGATTTTTTGTAGTGTGTATATAGTAAAAATAAGGGAAATCACAAA
AAGTTAGTGAGATTTGTATTTGAGTTTTTGTAATGGCAACAAGATTTTGT
ATAGGTTTTGTTATCCTGGTGTGTTTCACTTGTTGTTATGGTAAGATTTT
ACTGGACTTACTTGAAAACTTTCGTTGAAAATCATTATCTTTCATAAGAA
ATATATACAGGTTTAACCATCACAAACAATGTTTGGTTTACCATTGGAAA
GTGGTTTTACTGTACTTAACGGCTATTTAAGAAAATGGTCAACCTTCTTT
CAATCAATCATATTTGTCACAATTAGGACGTAATTTATGTAAATGGGCCA
ATTGACGCTTAGGAAAATAATCAAGTTAACTAACTTCCTCGAGTTCCTAG
TACCATACTTAAGGCTAACTGTCCAAAAAGTCCGCTCGACAATAGTTGTT
TTGGAGAACGCGACGGTCTATTGAATAACAAATTACTCCACATACATTTA
CTTTCCCTCATCCAGTAAAAACGTGACGAATCAGCTTGTCTCTAGGTAAC
TGTTGTGGAGTAATTGGTTTTTTCAAAAGACCGTTGCGTTCTCCAAAACA
TCTATCAAACACATTTTTGAGTTCTGATTTGTTTATTTGGTTCATACCGT
ACCTACCCATAACAATCCAAAAGCTCCCTTAACAATCATAAGCGCTAAAA
TCGCAAAAAGTGGCTTTTACCGCTGCAATTTTCGAATTTTTGCGATTTTC
GCGCTTTTGATTGTTAAGACTGCTTTTGGATTGTTAGAGGTAAGTACGGT
ACTTTTATCGTTGAGCGGACTTTTGGATTATTAGCCGGAAGTATAGTAGA
TTGTTACTACGCTACAAAATGTTCCTGAAAGTATAAGAGGACACGACAAT
TTTGAAAGTACAAAAAACTTTCGCATTGCAAATTAATTTAAAAATGAAGA
TCAAAAAAAATATTTTTCTCTGTTCTTAGAATCAAGTCAAGTCTTGACGT
CTGGTAGGAAGGTATTTTTCTTCGTCTTTTTGATTTGATTTTTTTGTTTC
TCATGAGAAATGAATTATTTTAAACCTGACACCCTGATCAGTATACACCT
TTTGTTTTATAGAAAGAATAAGCGTCCTTTTAGACCAAAATTATGCTTGT
GATATGATTATTTTTCCGAAAAAAAAATGAGATTGATCTTAAAAGATTTT
GATGTCAAGTGCGAAGTCTTTTCTTTTTCCAAGACTTGTTTTTAAAGTGG
ATGTGACCGGGATGTGACCTAAATAAATCTTCCCAACCAAAGCTCACTGG
TATGCTTAAGATATGCTTATTTTTTCACTCAGGTGAGTTAAGGAAAGTCA
AAAACCTATTTCCCGATTTTTCCACCGCTTCCCATTGTTCCTTAACTCTC
GTATATAGCTCAAAAGAAGCGTATTAATGAGAGGATTTCGGAAAGTGCTG
GGCCGAAAACTTAAATTAAGCCAATCTCAAGATATCGACCAAAAACTGAT
TTTGACGTTATGAAATACATCGAAAAAACACGTCATAAGTAGGATTCAAA
TGACGTCAATATTGAAAACAGCGATAACTTCAAGTCTATTAATGCAATCA
ACACCAAATTTTAACTGGAGATGTAGATTAACGATTCTAAAATATTTGTT
GAGAAATTTTCAAAATTTTTAGATGACGTCATTTACTGTCGGTAAAAACT
AAAATTTGTCAAATAATGATGACGTCATCAAAAAATTTCAAATTTTTTTA
ATGCATTATTTCAAAATCAACAATCAACGTCTCCAGTCTAAATTTGGTGT
TAATTGCAGTAATAGAATCGAAGTTATCGCTCTTTTAAAAAACAACGTCA
TTTAACTTGTCTTTTTAACGTGTTTTTTTGACGTATTTCCTAACGTCAAA
ACCAGTTTTTGGCCGATATCTTGAGATTGGCCTAATTTAAATTTTCGGCC
CAGCACTTTCCGAAATCCTCTCATTAATACGCTTCTTTTGAGCTATATAC
GAGAGTTAAGGAACAATGGGAAGCGGTGGAAAAATCGGGAAATAGGTTTT
GGACTTTCCTTAACTCACCTGAGACCAGAAATCCAGGTCTTAGTAGCTCG
GCAGTATCCTTATAATAAGCGTTATGCTTATAAAGAAAAACATGTACCAT
TCAATAATTTCCCATTTCATCGTTTTAGGCACGAGAGAATATATTGAAAC
GATTAGAGAATATTAATTCCATTGAAGAATTTGAAAAAGCATTCAACATC
AAAAATCCAAAAAGATCTTGTAAGTTGAATATGTTTAAACGACGATGTCC
AATTTTTTTTCTCACTGCGATGCAAGGACCCCTAATAAAAGACCTAATTA
ATTTGGGTCGAATGAGGTGGCCATAGGGTTTCTTAAAAGCGTTTGTATTG
CATTCATATAATGACTGACTTCAGTTCAGATACAAACAAATCTGATGATA
AGAAAAATGGATTACTTATGTTTGCTTTTTACACACGTAACATTGTTTTC
GATTTCGTTATAGATTTGAAGAAACGAGGGAATTTATTTCTTGGCAACCT
TCTCGATGATGTTGCACCGCTAGGTAAGCGACACCAGTTTTCTACACGTT
TATTTATAAGAACAAACTATATATGAGCATAAGGCTTCGAAAACAAGTTA
AGAACATTTTAAGCCTTTGCAGACTCTATTGCACCGAATTGCATTGGAAA
ATGGAAAATGGCGAAAATAAAAACATGTTTAGGCTTGAAACTCAAAAACT
TCAAAAGTTTTGGATTGTTAAAAAATGTGTATTATATAAGTATAAATCCT
GTCGAAATTAAAAGACTATAAATTCACCAGGGGGTAATACAGTTGCTCCA
TGACACTATGACGAGTTACTGCCATTTTGGGAAAATCTTTGTCACGCCAT
TATCATAATTCACCGTGTAGTAACTGTTTTCATTGCTTAAAGGGGGTAAA
CCACCCCATAAAATGGATTTGGAATTTGGATTTTCTAGATACATTTTGGT
TTGATTGTTGTATTCAAGAACCGTTGTTTACTTTTGGCTTAAGTGACTAT
CAAGATCTACTATCATAGATTTGGCAAAAAATCTTATTTCAGATATGAAA
AATTGACAGATATTTTTTGCCCAAAATTAAAAAATCTCAATTTATTGACA
AAATTGGCGTGGCGTTAATTCGGGAAGTATTTTTTCAAAAAATTGGAAAA
TGTACATATTTGGAATAACTGTTTTTAAGTTCATGTATTAACTGCATAAC
CCACCTGAATTCACAAGGTTTAAACTAGTATTCGCAATACATGAAGAAGC
TAAAGCACTCCTTTAAATTCATTTAATTTAATATTTCGTAGCTTATGGAA
GTCCTCGCCCCTGTGTACCCAAAGAAACCGTTTATACAATTCCTCACGTA
CCTGCGAGAGATCGTTATATTCCTGACTGTTTGAATGTCACGCGATGCGG
AGGATGTTGTAGCAGCTTCAAAACGAGCGCAGACATGGAATGTGTTGCGG
ATCAAACGGAAAGCAAAATGGCTAGAGTGTACCATTTTGACAAGTTCAGT
AAGTGTTTCTTCCATTTCTGCCGGATTTGAAATACTTTTGAACAAATGAA
GTTGTCAAATTTGAATCACTCTTTGGTAGACTTTTCGAACTCGATCAGGA
TTTTTTGAGATGATAATTTGAAGCGTTAATCTTGAGAGTATAACCTAAAA
ACAATTGTGACACCCCTGTCTCATCGGCGATGCAGTGCTGATAGAACGAG
CCGAGTGTCAATGGGGGTGAAAATTGCTAGTCTGTTTGTAGACCTCCATA
GATTCTTGTTATAAAGATTTGTTGTTAAAAATTTTTTGTTAAAGCATTCG
AGCAGAGGCCTAAGAAATACATGTTTTCAATGAATGGGAATTTCAAAATC
TATTCTTTACATCTATAACTCATTTCTAACCAAGTTAGATTAAAGTTCAA
TTTATAATTTCCCAATGGGATTTGAAGGTATTCTATTTTTCACACCGGGG
ACGATTTTTAAACTATTTTTCAGTGAAGAGAGAGCATCCTATCGGATCTG
TTATACTTGAAATAAAACGTTCAGCACCATTGGAGAATCTCTTGTTTTGA
TCTAAGATACCTAAAAAAGAATTAATTTTTTTTCAGTATGATCTTCTGAA
TGTTGACTGAGGGCCCTTTTTGAAGATTAAATTGCCGAATTTCGATGACT
ATAATGACAATGAAGAACTAAAAAGTTTTCTGATTTTTTTTAGCTGGAGG
ATATTCGCAAAAAGTCATTCCTTATGTGAACCATAAATCATGTAAATGTC
AATGCAAGACACAACCTGAAGATTGCAACCTTCAACAAACTTACGATCCT
AACCATTGTAAATGTAATTGTAATATCAAAAGTGCTACCTGTCCAAAATT
TATGGAGGTAAAAAACTAGATTGATACGTGAAGGGAGTTTCTGGCTAAGA
ATTTTACAGATATATACAAATACTAATCAATAATTGATGGAACGGTTTTA
TAGGGTCTCGAAATCAATATTTTTTAGTAAACCAGCATATTTTGCTATAC
TTTAGCCGAACCAGTGAAACTGATTCGCTAATTCTGAATGAACATTATGG
GAAGGTATTTTGTTACTTTATAATTCGTTAACCCATGAAATGCTATCATT
CCGTGACTTCAAATTTTCATAAATTTTGATTCCAAATACGAGTACACACC
CCAACCTAAGAGAGAAATGCCAAGCTTGACAATCTCGACTTATGTGATGC
CAGTAGCAATTAATGGATTAATGCTTTCCATTTACTTTTTCTTTTTCAGT
GGTCAGTATTAGCTTGTCAATGTAAATGCAAACCTCCAAGCACACCTTGT
GCACCAACGCACGCTTGGAACGATCAAACATGTCAATGTGATTGCATACC
ACGTGCGTGTGCTCAAGGCTATGGTTTTGATGTCAAAAAATGCACTTGTG
CTAAACTACAAGTCTAGACGAATTTCATCACAATGAGATTATTTCTGATC
AATTTTTCTTTATGGATAATATTGGGATCAAGGAGCTTATCACAGGCATC
GATATTTTTGATATCGATAGAATATTTATTGACTTCTATTATACTTTTGG
TTAACGGTTCAAACTTTAAATGAGACATTACAACCATACTCCATCGATTA
TTTCAGATCAATTACAATCATAAAATTCCAAGATGACGTCATCATAATGA
ATAATACCGACTTTGGTGTGAGACGGGAAAAAATAAACGTCAATTTTCCA
TGACACTTAGCAAATAAGACATTTCACATATTTTTTGAAAGGCTTGACAA
AGGAAATAGCTTAAATCGGCCTCTGAAACTCCCCTAGGATGTCCAAATGT
CAGAAGTTTAGGATCAGGTGCAGTTAGCGTGGTCACTGGTTGGATTCTTT
AGTAGTGGAGAGCACTGTTAAAGAATATAACCTAATGTCGTTTAACCTAA
TAATGTTATAAANN

Coding sequence (CDS) from alignment at scaffold_253:1060318..1065881-

>TCONS_00055556 ID=TCONS_00055556|Name=TCONS_00055556|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_253:1060318..1065881- (Clytia hemisphaerica)
TGGTCAGTATTAGCTTGTCAATGTAAATGCAAACCTCCAAGCACACCTTG
TGCACCAACGCACGCTTGGAACGATCAAACATGTCAATGTGATTGCATAC
CACGTGCGTGTGCTCAAGGCTATGGTTTTGATGTCAAAAAATGCACTTGT
GCTAAACTACAAGTCTAGCTGGAGGATATTCGCAAAAAGTCATTCCTTAT
GTGAACCATAAATCATGTAAATGTCAATGCAAGACACAACCTGAAGATTG
CAACCTTCAACAAACTTACGATCCTAACCATTGTAAATGTAATTGTAATA
TCAAAAGTGCTACCTGTCCAAAATTTATGGAGCTTATGGAAGTCCTCGCC
CCTGTGTACCCAAAGAAACCGTTTATACAATTCCTCACGTACCTGCGAGA
GATCGTTATATTCCTGACTGTTTGAATGTCACGCGATGCGGAGGATGTTG
TAGCAGCTTCAAAACGAGCGCAGACATGGAATGTGTTGCGGATCAAACGG
AAAGCAAAATGGCTAGAGTGTACCATTTTGACAAGTTCAATTTGAAGAAA
CGAGGGAATTTATTTCTTGGCAACCTTCTCGATGATGTTGCACCGCTAGG
CACGAGAGAATATATTGAAACGATTAGAGAATATTAATTCCATTGAAGAA
TTTGAAAAAGCATTCAACATCAAAAATCCAAAAAGATCTTAATCAAGTCA
AGTCTTGACGTCTGGTAGGAAGATGGCAACAAGATTTTGTATAGGTTTTG
TTATCCTGGTGTGTTTCACTTGTTGTTATGTGGTCAGTATTAGCTTGTCA
ATGTAAATGCAAACCTCCAAGCACACCTTGTGCACCAACGCACGCTTGGA
ACGATCAAACATGTCAATGTGATTGCATACCACGTGCGTGTGCTCAAGGC
TATGGTTTTGATGTCAAAAAATGCACTTGTGCTAAACTACAAGTCTAGCT
GGAGGATATTCGCAAAAAGTCATTCCTTATGTGAACCATAAATCATGTAA
ATGTCAATGCAAGACACAACCTGAAGATTGCAACCTTCAACAAACTTACG
ATCCTAACCATTGTAAATGTAATTGTAATATCAAAAGTGCTACCTGTCCA
AAATTTATGGAGCTTATGGAAGTCCTCGCCCCTGTGTACCCAAAGAAACC
GTTTATACAATTCCTCACGTACCTGCGAGAGATCGTTATATTCCTGACTG
TTTGAATGTCACGCGATGCGGAGGATGTTGTAGCAGCTTCAAAACGAGCG
CAGACATGGAATGTGTTGCGGATCAAACGGAAAGCAAAATGGCTAGAGTG
TACCATTTTGACAAGTTCAATTTGAAGAAACGAGGGAATTTATTTCTTGG
CAACCTTCTCGATGATGTTGCACCGCTAGGCACGAGAGAATATATTGAAA
CGATTAGAGAATATTAATTCCATTGAAGAATTTGAAAAAGCATTCAACAT
CAAAAATCCAAAAAGATCTTAATCAAGTCAAGTCTTGACGTCTGGTAGGA
AGATGGCAACAAGATTTTGTATAGGTTTTGTTATCCTGGTGTGTTTCACT
TGTTGTTATGTGGTCAGTATTAGCTTGTCAATGTAAATGCAAACCTCCAA
GCACACCTTGTGCACCAACGCACGCTTGGAACGATCAAACATGTCAATGT
GATTGCATACCACGTGCGTGTGCTCAAGGCTATGGTTTTGATGTCAAAAA
ATGCACTTGTGCTAAACTACAAGTCTAGCTGGAGGATATTCGCAAAAAGT
CATTCCTTATGTGAACCATAAATCATGTAAATGTCAATGCAAGACACAAC
CTGAAGATTGCAACCTTCAACAAACTTACGATCCTAACCATTGTAAATGT
AATTGTAATATCAAAAGTGCTACCTGTCCAAAATTTATGGAGCTTATGGA
AGTCCTCGCCCCTGTGTACCCAAAGAAACCGTTTATACAATTCCTCACGT
ACCTGCGAGAGATCGTTATATTCCTGACTGTTTGAATGTCACGCGATGCG
GAGGATGTTGTAGCAGCTTCAAAACGAGCGCAGACATGGAATGTGTTGCG
GATCAAACGGAAAGCAAAATGGCTAGAGTGTACCATTTTGACAAGTTCAA
TTTGAAGAAACGAGGGAATTTATTTCTTGGCAACCTTCTCGATGATGTTG
CACCGCTAGGCACGAGAGAATATATTGAAACGATTAGAGAATATTAATTC
CATTGAAGAATTTGAAAAAGCATTCAACATCAAAAATCCAAAAAGATCTT
AATCAAGTCAAGTCTTGACGTCTGGTAGGAAGATGGCAACAAGATTTTGT
ATAGGTTTTGTTATCCTGGTGTGTTTCACTTGTTGTTATGTGGTCAGTAT
TAGCTTGTCAATGTAAATGCAAACCTCCAAGCACACCTTGTGCACCAACG
CACGCTTGGAACGATCAAACATGTCAATGTGATTGCATACCACGTGCGTG
TGCTCAAGGCTATGGTTTTGATGTCAAAAAATGCACTTGTGCTAAACTAC
AAGTCTAGCTGGAGGATATTCGCAAAAAGTCATTCCTTATGTGAACCATA
AATCATGTAAATGTCAATGCAAGACACAACCTGAAGATTGCAACCTTCAA
CAAACTTACGATCCTAACCATTGTAAATGTAATTGTAATATCAAAAGTGC
TACCTGTCCAAAATTTATGGAGCTTATGGAAGTCCTCGCCCCTGTGTACC
CAAAGAAACCGTTTATACAATTCCTCACGTACCTGCGAGAGATCGTTATA
TTCCTGACTGTTTGAATGTCACGCGATGCGGAGGATGTTGTAGCAGCTTC
AAAACGAGCGCAGACATGGAATGTGTTGCGGATCAAACGGAAAGCAAAAT
GGCTAGAGTGTACCATTTTGACAAGTTCAATTTGAAGAAACGAGGGAATT
TATTTCTTGGCAACCTTCTCGATGATGTTGCACCGCTAGGCACGAGAGAA
TATATTGAAACGATTAGAGAATATTAATTCCATTGAAGAATTTGAAAAAG
CATTCAACATCAAAAATCCAAAAAGATCTTAATCAAGTCAAGTCTTGACG
TCTGGTAGGAAGATGGCAACAAGATTTTGTATAGGTTTTGTTATCCTGGT
GTGTTTCACTTGTTGTTATGTGGTCAGTATTAGCTTGTCAATGTAAATGC
AAACCTCCAAGCACACCTTGTGCACCAACGCACGCTTGGAACGATCAAAC
ATGTCAATGTGATTGCATACCACGTGCGTGTGCTCAAGGCTATGGTTTTG
ATGTCAAAAAATGCACTTGTGCTAAACTACAAGTCTAGCTGGAGGATATT
CGCAAAAAGTCATTCCTTATGTGAACCATAAATCATGTAAATGTCAATGC
AAGACACAACCTGAAGATTGCAACCTTCAACAAACTTACGATCCTAACCA
TTGTAAATGTAATTGTAATATCAAAAGTGCTACCTGTCCAAAATTTATGG
AGCTTATGGAAGTCCTCGCCCCTGTGTACCCAAAGAAACCGTTTATACAA
TTCCTCACGTACCTGCGAGAGATCGTTATATTCCTGACTGTTTGAATGTC
ACGCGATGCGGAGGATGTTGTAGCAGCTTCAAAACGAGCGCAGACATGGA
ATGTGTTGCGGATCAAACGGAAAGCAAAATGGCTAGAGTGTACCATTTTG
ACAAGTTCAATTTGAAGAAACGAGGGAATTTATTTCTTGGCAACCTTCTC
GATGATGTTGCACCGCTAGGCACGAGAGAATATATTGAAACGATTAGAGA
ATATTAATTCCATTGAAGAATTTGAAAAAGCATTCAACATCAAAAATCCA
AAAAGATCTTAATCAAGTCAAGTCTTGACGTCTGGTAGGAAGATGGCAAC
AAGATTTTGTATAGGTTTTGTTATCCTGGTGTGTTTCACTTGTTGTTATG
TGGTCAGTATTAGCTTGTCAATGTAAATGCAAACCTCCAAGCACACCTTG
TGCACCAACGCACGCTTGGAACGATCAAACATGTCAATGTGATTGCATAC
CACGTGCGTGTGCTCAAGGCTATGGTTTTGATGTCAAAAAATGCACTTGT
GCTAAACTACAAGTCTAGCTGGAGGATATTCGCAAAAAGTCATTCCTTAT
GTGAACCATAAATCATGTAAATGTCAATGCAAGACACAACCTGAAGATTG
CAACCTTCAACAAACTTACGATCCTAACCATTGTAAATGTAATTGTAATA
TCAAAAGTGCTACCTGTCCAAAATTTATGGAGCTTATGGAAGTCCTCGCC
CCTGTGTACCCAAAGAAACCGTTTATACAATTCCTCACGTACCTGCGAGA
GATCGTTATATTCCTGACTGTTTGAATGTCACGCGATGCGGAGGATGTTG
TAGCAGCTTCAAAACGAGCGCAGACATGGAATGTGTTGCGGATCAAACGG
AAAGCAAAATGGCTAGAGTGTACCATTTTGACAAGTTCAATTTGAAGAAA
CGAGGGAATTTATTTCTTGGCAACCTTCTCGATGATGTTGCACCGCTAGG
CACGAGAGAATATATTGAAACGATTAGAGAATATTAATTCCATTGAAGAA
TTTGAAAAAGCATTCAACATCAAAAATCCAAAAAGATCTTAATCAAGTCA
AGTCTTGACGTCTGGTAGGAAGATGGCAACAAGATTTTGTATAGGTTTTG
TTATCCTGGTGTGTTTCACTTGTTGTTATGTGGTCAGTATTAGCTTGTCA
ATGTAAATGCAAACCTCCAAGCACACCTTGTGCACCAACGCACGCTTGGA
ACGATCAAACATGTCAATGTGATTGCATACCACGTGCGTGTGCTCAAGGC
TATGGTTTTGATGTCAAAAAATGCACTTGTGCTAAACTACAAGTCTAGCT
GGAGGATATTCGCAAAAAGTCATTCCTTATGTGAACCATAAATCATGTAA
ATGTCAATGCAAGACACAACCTGAAGATTGCAACCTTCAACAAACTTACG
ATCCTAACCATTGTAAATGTAATTGTAATATCAAAAGTGCTACCTGTCCA
AAATTTATGGAGCTTATGGAAGTCCTCGCCCCTGTGTACCCAAAGAAACC
GTTTATACAATTCCTCACGTACCTGCGAGAGATCGTTATATTCCTGACTG
TTTGAATGTCACGCGATGCGGAGGATGTTGTAGCAGCTTCAAAACGAGCG
CAGACATGGAATGTGTTGCGGATCAAACGGAAAGCAAAATGGCTAGAGTG
TACCATTTTGACAAGTTCAATTTGAAGAAACGAGGGAATTTATTTCTTGG
CAACCTTCTCGATGATGTTGCACCGCTAGGCACGAGAGAATATATTGAAA
CGATTAGAGAATATTAATTCCATTGAAGAATTTGAAAAAGCATTCAACAT
CAAAAATCCAAAAAGATCTTAATCAAGTCAAGTCTTGACGTCTGGTAGGA
AGATGGCAACAAGATTTTGTATAGGTTTTGTTATCCTGGTGTGTTTCACT
TGTTGTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034941XLOC_034941Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055556-proteinTCONS_00055556-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055556-exon-scaffold_253-1575043694:1065642..1065881TCONS_00055556-exon-scaffold_253-1575043694:1065642..1065881Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1064771..1064802TCONS_00055556-exon-scaffold_253-1575043694:1064771..1064802Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1063513..1063603TCONS_00055556-exon-scaffold_253-1575043694:1063513..1063603Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1063209..1063268TCONS_00055556-exon-scaffold_253-1575043694:1063209..1063268Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1062234..1062440TCONS_00055556-exon-scaffold_253-1575043694:1062234..1062440Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1061375..1061538TCONS_00055556-exon-scaffold_253-1575043694:1061375..1061538Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1575043694:1060318..1060982TCONS_00055556-exon-scaffold_253-1575043694:1060318..1060982Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1065642..1065881TCONS_00055556-exon-scaffold_253-1510915933:1065642..1065881Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1064771..1064802TCONS_00055556-exon-scaffold_253-1510915933:1064771..1064802Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1063513..1063603TCONS_00055556-exon-scaffold_253-1510915933:1063513..1063603Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1063209..1063268TCONS_00055556-exon-scaffold_253-1510915933:1063209..1063268Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1062234..1062440TCONS_00055556-exon-scaffold_253-1510915933:1062234..1062440Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1061375..1061538TCONS_00055556-exon-scaffold_253-1510915933:1061375..1061538Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1510915933:1060318..1060982TCONS_00055556-exon-scaffold_253-1510915933:1060318..1060982Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1065642..1065881TCONS_00055556-exon-scaffold_253-1491911889:1065642..1065881Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1064771..1064802TCONS_00055556-exon-scaffold_253-1491911889:1064771..1064802Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1063513..1063603TCONS_00055556-exon-scaffold_253-1491911889:1063513..1063603Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1063209..1063268TCONS_00055556-exon-scaffold_253-1491911889:1063209..1063268Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1062234..1062440TCONS_00055556-exon-scaffold_253-1491911889:1062234..1062440Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1061375..1061538TCONS_00055556-exon-scaffold_253-1491911889:1061375..1061538Clytia hemisphaericaexon
TCONS_00055556-exon-scaffold_253-1491911889:1060318..1060982TCONS_00055556-exon-scaffold_253-1491911889:1060318..1060982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1060318..1065881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.2384	84.8027	42.4514	36.9405	3.10027	3.35724	12.4399	14.0745	11.3989	11.9285	9.81991	10.4326	25.1015	23.8234	30.307	29.3155	18.5009	22.0808	38.443	33.1724	16.0666	16.156	44.8085	40.9468	13.3069	15.5562	53.3505	49.0516	48.8911	66.4589
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000072PDGF/VEGF_dom
IPR029034Cystine-knot_cytokine
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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