TCONS_00055555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055555
Unique NameTCONS_00055555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055555 ID=TCONS_00055555|Name=TCONS_00055555|organism=Clytia hemisphaerica|type=transcript|length=4810bp
TGTTTAAGgcttataaaatcattgtaaaagGTCCTTCCATCATTTAACTT
TTGGAGAGGTTTGATGTTAGATGTCATAGGTCATCAAAgtgaatgaaaat
attgaagggTTGAAACTTAAATTTTTATGCAAATTTTGGCAAGGCTATCA
TAAGATAAACATATTTTGGTGAACTTTTCGGATAGAGGAGCAATGAGGAT
TTCAtcagtttttgttttgttggtttttgtcaGTCTATGCTTGGCCAAGA
AAGGATATTAtcgaaaaattcaagatggtagATTCAAACCTGTGCGTGTT
ATACGTCCAAAAGTTGTCACTCAGTTTGACAAAAATAAGATGGAAGTTGC
AAATAAGATGAAGAAAGTAAAAAACATGGAAGattttttgagagttttca
aAGTGCCTTATGttaaaaagaGACGGATAAGCCTTGCTAAACCACAAGGA
GAAACACATACGTTTCTCGAAACACATACTCTTCTCGGAACAACAGATTC
TGATTCGAAACTGGAAGCTCCAGAGTtcgaatttttcattaaaaagccaa
CGATCGGGAAAGAACAATCTCTTGTTGGTGAAAGCAATAGACACACGATA
CTGGGAACATCAGAGAAGTCTTCTGAATCTGTCAAACTCAGTGATGAAGA
TTTAGGCTGTCAACCTCGACCAACCATATACAGCCTCACTGCAAGTCACA
ACTACTTCGATTACCCTTCGTGTTTCACCCTATACCAATGTGGTGGTTGC
TGTAATTCAAAACCTGGAAATATTTGTCGACCGACTGAACTATCTGTTAA
AACTGTATCTCACGTGAGGCTGTCATATATTACAAACCGATATACTCAAG
AGACAGTGCGGTTGAATCACCACAAGAAATGTGAATGCAGGTGTAAAATA
GATGCCACAGACTGTTCACAAACACAAACGTTTGATCCAAATCTTTGCAC
GTGTGTTTGCAGCGGACAACTACAACCTTGTGCTGAAAACAAAGTGTGGT
CGAACAACGAATGTGGGTGTCTTTGCAAGACGTCACCTCAAAGATGCCCC
TTCAGGAAAGAATGGGACAAAACAAAGTGCAGTTGTCAATGCATCCCTAA
GAAATGTGGAGTTGGAGAATCACAAGATCCCACCACTTGCTATTGTGCCA
AAATATGAACTAATTTAAATACCAAAGACGCCCATTTAACTAGTGATTCT
GTGTATTAGACGAGTACTGACCATTTTATAAATTGCGCTTGTTCACAAAG
AAGAAGCTACCTTGTCGTTTGGTTTAATGAGGTTAATTAAATTTAAGGCG
AATATTCTAATTGatttacaatcatggtcgaaatatattgacattttagt
gtattttaacgtttttcagaatttaaagttcggatgagaattgctatttt
agcaatttttatttttcggtggcttctaggctacaATCAAgctcataata
tttgagaaaaaagggaaatacaccgggaagtttttgaaccacaatcgatt
tgtaagtgctttaagtaggttggaagggtagagttttaacatgagactta
agactcaaaaatagtccaataaggctcagaatatagcctgtaagtctgcc
aaccccttccaaattgaaatatttgattaaattaaagagatagcccaaaa
tcgactttctcgccggaactttaaatcttgaaaaacgttaaaataaccaa
aattctcaaaatattatgacctttatcgtatattccaagccttattcgag
caaatttgagtttttataaagatcctaaggtcttaagtctcatgttaaaa
ctctactttccaactgtagtttcaggcgcttaaaaatcatttgcagTGTT
CAAAATTTCgccgggaaatcccctttgtctcaaatattttgtccatgatt
gtagactttcattttaaaatgaaattgtataTAGACAAATCATgcgaaaa
atgtaaacaaataaatgtccatatactttaggcgtacaaactttcgcgat
tttcgtgaattttggtCTATCTCGCGAAAGTGAAtgcatttgaaaattct
taacaaggtgattcgcgaaagtttctgctcgcgaaaaattctaaAGTACG
TATTTTAAACTTGATCCGTCTTCCggaattgaaattttttctataATTCT
TATACTGtcaaagttcttgaaaaaaaacaataaaaacgacaatctttttt
ggtattttcaaatgttttttccACTATAGGTATTAAAATATCATTAGTAT
AAAATCACTACGAAATCATTGCTTACTAtttgtgtaatatataataaaga
ataaaataaaaaatcttataaattTTATACAGCCTAATCGATATTATGCA
GTACTTTCTTTGCGACTCAAGCATACTGGTCCAAGGTTGTCACCTGTTAA
TTTGTTGTGTGCGTTGTGGGTACCATCACAGTATGGGAActgaaatagag
aaaaattatTTGGAGTGTCACAGAAAGAatttaatatttaaattttaatg
TGTTCCTTAAATAAAAACATACATAAGTCTTGACAGAAAACGAATTCAGA
TATCCAACTAAATTACCAAACGGACGGAATAAGTTCCCTTTTATTTAAGC
TCTGTTTTATGAAGTCCAAATACTGGTCCAGGTTGGTCTCTGAGATTTGA
AGACGTTCATTAATCATAAATCCTTTCTAAGAAGGATAAAAGGCACTTCA
ACCAATTATTGTTTGTATGTCTTAAACAATCCAAAATCTATTCCATTGAA
AGGAGAAGGGGACATTATCGCATCATCTATGTTTGGAAGGTGTTAGAAGG
TATAGTACCTAGGGCGAATAGAAGTATAAAAGCTTACAAAAATCGCTGGC
TGCAGCTGGCTGTGCCACCTTTCAAGGAATCAAACATCCAAGCTTAGAGA
TTGCACTCTTTTTGTACAAGGTGCAAAGCTATTCAATGCAATACCAAAGA
ACataagaaacttaaaaaaaacacttcaactgaaaagtttaaaaatgccC
TTGACACTCAAAAGTTGATCCCCGATGAACCCTAAATTCATGGATAAACT
GGGTGCAAGAGAGCTGATTCAAATTCAATACTTGACATGAAAAGTGTCTG
CTCTCGACATTTTGATCGTACTGAGGCATGGTTCACAAAGAATCTTGCCC
GGGCACTCTACTTGAACACCTACACCAAGTAACACAAGTATGTAAGTAAC
AAAACCatcttaccaaattttaactCAAAAAAAGGACCCTGTAAGTGTTT
ACCTTTTTAGATTTCCAACATCTACAGAAGGCAACTTTATCACCAAGGTC
CTCTATATCATAGCTGTTCACAACCTTTGCTTTGTCAAGTTCATGAGCAG
TGTTGAATCGACCTTCGCTTGCTGAGCAACCAGAGAGCtgataaaaatta
agaaaataattgcaaagattaaaaaaggtgttcttttcaaattaaCTGTC
AGGTAAATAATAAATTGGAATACTTTTAACCCAGTGAGGGGGTGTACTGA
CCTTGaagatagaccttttgctaaaaAAACAATGACAAATTAATGGTTGA
TTacttaaaagatttttcttgtgttggtgggatggagagcatatgttgca
ttgcaccaacgcgaaaaaaacttctcgtgccCGATGCCCCCAAGCCTTAA
GGGTCTGAttttaaaggcctaattttgggctgcACATACGGTTGTTTTTT
AATCAAGTGCCTCCCTCTACAGCCCTATagcgtaacttggtctaatgtcg
acacccctcctctataATTCctacaccctttttatcagctgaaatttata
gaaaggttgaaactgttacgaccctgccggtgcacccgacagtcggatGT
TGTTGTCGGGTGTTTGAAGTTAGAAATTTaaacacccgacagtcgggtgc
actTTTGTCGGGTGCTACTTAAACATACTACTAAACCATATACTTTTCTG
AAAGCCTATGATCAGGGCTACATGATGAGCTGGtcgactttttaattttt
tactgtCATTaataatgctgacgtcatcaaaatcgccattttttggactt
tttttttatcttggGCGCTTTTAACAGCACCCGACATGTAAGTTAGGAAT
TTTAGCACCCGACTGTTGGGTGCGCTATTGTCGGgtgtttttgcaaattt
agaaatttcagcacccgacaaaacacccgacagcacccgactgtcgggtg
caccggcGGCGGCAGGGTCgtaaactgtttttctttgtttttctttagtg
gtcagagaggaataatcctttttcaatcagcgattcaagctttcatatta
gttctttctctaaagaagggtgtcagaattagacgagGAGGGATGTTGAT
ATATTATAAGATTATTTAGATAGACCAACTCACGGTAGTACGACCGGTAC
GACTATAATACATGCCCACAATGCCACATCTGATAAATTCAGGTTTCTAT
GAATATAAGGGACGAAACAACCACATTTCCAAAGTTATAATTCATGCTAG
AGTAGGACTACTGTAGAGCTTTTAATTAAATTGATAAAACACCATACCTT
TGGTATAACCACTTTCAGAGCCACAAAAGCAGTTACACTCCCAGCAAGAA
AGCTTGCTCCTAATTTCAAGAGATCTTCTTGCTTCATATTGATTTGTGAA
CAAATAAGCTAGGGAAGAAAAGAATGGCAGTAGTTGTATATAAAGAGAAG
AATATGAAGACACCTGAAATTCCAAATTTGTTTTTCGAATTTGTGCACAA
AAATACCTGCCTTTTCTTCGAGCCACAGAtgtcttataaaaatattagag
TGGACTGCTT
Run BLAST on NCBI

protein sequence of VEGF related ligand

>TCONS_00055555-protein ID=TCONS_00055555-protein|Name=VEGF related ligand|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MRISSVFVLLVFVSLCLAKKGYYRKIQDGRFKPVRVIRPKVVTQFDKNKM
EVANKMKKVKNMEDFLRVFKVPYVKKRRISLAKPQGETHTFLETHTLLGT
TDSDSKLEAPEFEFFIKKPTIGKEQSLVGESNRHTILGTSEKSSESVKLS
DEDLGCQPRPTIYSLTASHNYFDYPSCFTLYQCGGCCNSKPGNICRPTEL
SVKTVSHVRLSYITNRYTQETVRLNHHKKCECRCKIDATDCSQTQTFDPN
LCTCVCSGQLQPCAENKVWSNNECGCLCKTSPQRCPFRKEWDKTKCSCQC
IPKKCGVGESQDPTTCYCAKI
Run BLAST on NCBI

transcript from alignment at scaffold_253:1042364..1048847-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055555 ID=TCONS_00055555|Name=TCONS_00055555|organism=Clytia hemisphaerica|type=transcript|length=6484bp|location=Sequence derived from alignment at scaffold_253:1042364..1048847- (Clytia hemisphaerica)
TGTTTAAGGCTTATAAAATCATTGTAAAAGGTCCTTCCATCATTTAACTT
TTGGAGAGGTTTGATGTTAGATGTCATAGGTCATCAAAGTGAATGAAAAT
ATTGAAGGGTTGAAACTTAAATTTTTATGCAAATTTTGGCAAGGCTATCA
TAAGATAAACATATTTTGGTGAACTTTTCGGATAGAGGAGCAATGAGGAT
TTCATCAGTTTTTGTTTTGTTGGTTTTTGTCAGTCTATGCTTGGCCAAGA
AAGGATATTATCGAAAAATTCAAGATGGTAGATTCAAACCTGTGCGTGTT
ATACGTCCAAAAGTTGTCACTCAGTTTGACAAAAATAAGGTAAGGATAAT
CTTTTTTATAGTCCCTTCTTTTTGTCAACAAAAGATGGCACGTGGATAGA
GTCGGATAGCGTAAAACCAAAATTCCTTAAAATGATTTATGTATTTTGAT
GTAATTTATGTACTTAACTTCTCTGAGTTGTAAGCCTAAAATTTTCCGTA
AATGTTCTTATTTTCACTATTTTGTGAGTTTTTGTGTAATTTCCTAAGAA
ATTGGGTGTTCTAGAGTCCGCGAAGCCTTAAAATGAAACTTGTTCTTAGT
ATTTTGTCCTTCGAAGCCTTGTTTTCTTATATAGTTTGTATAACGTGTAT
TTGTTGTTTATTTGTAGATGGAAGTTGCAAATAAGATGAAGAAAGTAAAA
AACATGGAAGATTTTTTGAGAGTTTTCAAAGTGCCTTATGGTAAAAAATG
TTTGTTACCCCCTGTCTCATTGACAATCCCAATCCAGACAATTTCCTCCA
ATGTGAAACTACATAATCTGAATCCCAGATCTCCTAAAATCTCGAGTTAT
GGAATAACATTAGGCTAGTAGAACACAACAATGTTTTCGTCGTCTTCTCA
AACAGGTAATTTTGAGCAATAAGAACTACGTTGCATTCTTTTCTAAAATG
TTTGTAATTAAGATATTAATTTTGATTTTTTTTTCTACAGCGTGTCTCCA
AACCAAAATAATCTTTACAATTTTATTTTTCAGTTAAAAAGAGACGGATA
AGCCTTGCTAAACCACAAGGAGAAACACATACGTTTCTCGAAACACATAC
TCTTCTCGGAACAACAGATTCTGATTCGAAACTGGAAGCTCCAGAGTTCG
AATTTTTCATTAAAAAGCCAACGATCGGGAAAGAACAATCTCTTGTTGGT
GAAAGCAATAGACACACGATACTGGGAACATCAGAGAAGTCTTCTGAATC
TGTCAAACTCAGTTAGTAACATCTAATTCTAATTCAATATTCTCATGTTA
GGCAACATTTGCGACAAAAACGGTACTCTTGTTAAATCATACGTATATAA
TTAATAAGTAATCTAAAGGGGTCTAAATCTTCAAAGACTGATGGACAATC
TTTCAAACTCTATATTTTTGATGCCCTAACAAAAGCGTTGTAGCAGAGGG
CGACACTAGTGATCGAATTAATTCCTTGACTCGCCACGCTACCGCCTAAC
AGATTTTATCGCCCAAATTTTGAAAATAAAGCAGCTGAAACAAAAAGGAA
GATAGACTTATACTCAAATAAGTGAAATCTATTCACCGTTTCTCAATATT
TCGTAACTTATTTCACTTCCAGGTGATGAAGATTTAGGCTGTCAACCTCG
ACCAACCATATACAGCCTCACTGCAAGTCACAACTACTTCGATTACCCTT
CGTGTTTCACCCTATACCAATGTGGTGGTTGCTGTAATTCAAAACCTGGA
AATATTTGTCGACCGACTGAACTATCTGTTAAAACTGTATCTCACGTGAG
GCTGTCATATATTACAAGTGAGTTTTTACGGTTAACTATCTTCTGAACTC
CTCATGCTTAGGCTATCTATCGTCATCTCCCCCATTGTTTAGAGTGTAAA
TTTCCTAACTTTCAATTTTGGTGCTGTCTATTGTGTCGCCGCCGACAAAA
TCTCTTCTTACGCTTACCTAACTCCTACACTCACTTTTCTCGCGTAATAC
CGTTCCAGCCCGACCGGTGTGCCAGTCTAGGGTTTGCTAAATCTGTGTAA
AGAATTTTCATTAATCAATATTCTAATACTAATTTCTCCACCTTTCCCTT
TAAGACCGATATACTCAAGAGACAGTGCGGTTGAATCACCACAAGAAATG
TGAATGCAGGTGTAAAATAGATGCCACAGACTGTTCACAAACACAAACGT
TTGATCCAAATCTTTGCACGTGTGTTTGCAGCGGACAACTACAACCTTGT
GCTGAAAACAAAGTGGTAATTTCTAATTTTCCGTTTACTTTGAGGTTAAG
GTAGGCCCTGAAACCCGAAAAAACATTATCGTTATTCAAAGTGAGATAGT
GTTTCCATTGGATCTGCTTATCTAACTCAGGCAAAAACACTCTCGTTTAT
TCGAAGCGAGTTTTATTCGCCTTGAGACAAATTACAGGCTATACTTAATC
GCCCTTAGTTATTTGAACTTTTCTAATTGGGAGATGGTAGAGTGAGGACT
GCGATTGAAGAATTCCCGGTTATTCGAAGTAAATTTTTATCCCCTTGGAG
CTTCGTGTATGTTGGAAATTCGACTTCTTCTTTTCCTAGCGTAATTACTG
ATAATTCTCTTTTTCTTAGTCTCTAAGGGTCAAATTTCGATTTTTTGCTC
TGATCTTCTTTTACTTTAAGTGGTCGAACAACGAATGTGGGTGTCTTTGC
AAGACGTCACCTCAAAGATGCCCCTTCAGGAAAGAATGGGACAAAACAAA
GTGCAGTTGTCAATGCATCCCTAAGAAATGTGGAGTTGGAGAATCACAAG
ATCCCACCACTTGCTATTGTGCCAAAATATGAACTAATTTAAATACCAAA
GACGCCCATTTAACTAGTGATTCTGTGTATTAGACGAGTACTGACCATTT
TATAAATTGCGCTTGTTCACAAAGAAGAAGCTACCTTGTCGTTTGGTTTA
ATGAGGTTAATTAAATTTAAGGCGAATATTCTAATTGATTTACAATCATG
GTCGAAATATATTGACATTTTAGTGTATTTTAACGTTTTTCAGAATTTAA
AGTTCGGATGAGAATTGCTATTTTAGCAATTTTTATTTTTCGGTGGCTTC
TAGGCTACAATCAAGCTCATAATATTTGAGAAAAAAGGGAAATACACCGG
GAAGTTTTTGAACCACAATCGATTTGTAAGTGCTTTAAGTAGGTTGGAAG
GGTAGAGTTTTAACATGAGACTTAAGACTCAAAAATAGTCCAATAAGGCT
CAGAATATAGCCTGTAAGTCTGCCAACCCCTTCCAAATTGAAATATTTGA
TTAAATTAAAGAGATAGCCCAAAATCGACTTTCTCGCCGGAACTTTAAAT
CTTGAAAAACGTTAAAATAACCAAAATTCTCAAAATATTATGACCTTTAT
CGTATATTCCAAGCCTTATTCGAGCAAATTTGAGTTTTTATAAAGATCCT
AAGGTCTTAAGTCTCATGTTAAAACTCTACTTTCCAACTGTAGTTTCAGG
CGCTTAAAAATCATTTGCAGTGTTCAAAATTTCGCCGGGAAATCCCCTTT
GTCTCAAATATTTTGTCCATGATTGTAGACTTTCATTTTAAAATGAAATT
GTATATAGACAAATCATGCGAAAAATGTAAACAAATAAATGTCCATATAC
TTTAGGCGTACAAACTTTCGCGATTTTCGTGAATTTTGGTCTATCTCGCG
AAAGTGAATGCATTTGAAAATTCTTAACAAGGTGATTCGCGAAAGTTTCT
GCTCGCGAAAAATTCTAAAGTACGTATTTTAAACTTGATCCGTCTTCCGG
AATTGAAATTTTTTCTATAATTCTTATACTGTCAAAGTTCTTGAAAAAAA
ACAATAAAAACGACAATCTTTTTTGGTATTTTCAAATGTTTTTTCCACTA
TAGGTATTAAAATATCATTAGTATAAAATCACTACGAAATCATTGCTTAC
TATTTGTGTAATATATAATAAAGAATAAAATAAAAAATCTTATAAATTTT
ATACAGCCTAATCGATATTATGCAGTACTTTCTTTGCGACTCAAGCATAC
TGGTCCAAGGTTGTCACCTGTTAATTTGTTGTGTGCGTTGTGGGTACCAT
CACAGTATGGGAACTGAAATAGAGAAAAATTATTTGGAGTGTCACAGAAA
GAATTTAATATTTAAATTTTAATGTGTTCCTTAAATAAAAACATACATAA
GTCTTGACAGAAAACGAATTCAGATATCCAACTAAATTACCAAACGGACG
GAATAAGTTCCCTTTTATTTAAGCTCTGTTTTATGAAGTCCAAATACTGG
TCCAGGTTGGTCTCTGAGATTTGAAGACGTTCATTAATCATAAATCCTTT
CTAAGAAGGATAAAAGGCACTTCAACCAATTATTGTTTGTATGTCTTAAA
CAATCCAAAATCTATTCCATTGAAAGGAGAAGGGGACATTATCGCATCAT
CTATGTTTGGAAGGTGTTAGAAGGTATAGTACCTAGGGCGAATAGAAGTA
TAAAAGCTTACAAAAATCGCTGGCTGCAGCTGGCTGTGCCACCTTTCAAG
GAATCAAACATCCAAGCTTAGAGATTGCACTCTTTTTGTACAAGGTGCAA
AGCTATTCAATGCAATACCAAAGAACATAAGAAACTTAAAAAAAACACTT
CAACTGAAAAGTTTAAAAATGCCCTTGACACTCAAAAGTTGATCCCCGAT
GAACCCTAAATTCATGGATAAACTGGGTGCAAGAGAGCTGATTCAAATTC
AATACTTGACATGAAAAGTGTCTGCTCTCGACATTTTGATCGTACTGAGG
CATGGTTCACAAAGAATCTTGCCCGGGCACTCTACTTGAACACCTACACC
AAGTAACACAAGTATGTAAGTAACAAAACCATCTTACCAAATTTTAACTC
AAAAAAAGGACCCTGTAAGTGTTTACCTTTTTAGATTTCCAACATCTACA
GAAGGCAACTTTATCACCAAGGTCCTCTATATCATAGCTGTTCACAACCT
TTGCTTTGTCAAGTTCATGAGCAGTGTTGAATCGACCTTCGCTTGCTGAG
CAACCAGAGAGCTGATAAAAATTAAGAAAATAATTGCAAAGATTAAAAAA
GGTGTTCTTTTCAAATTAACTGTCAGGTAAATAATAAATTGGAATACTTT
TAACCCAGTGAGGGGGTGTACTGACCTTGAAGATAGACCTTTTGCTAAAA
AAACAATGACAAATTAATGGTTGATTACTTAAAAGATTTTTCTTGTGTTG
GTGGGATGGAGAGCATATGTTGCATTGCACCAACGCGAAAAAAACTTCTC
GTGCCCGATGCCCCCAAGCCTTAAGGGTCTGATTTTAAAGGCCTAATTTT
GGGCTGCACATACGGTTGTTTTTTAATCAAGTGCCTCCCTCTACAGCCCT
ATAGCGTAACTTGGTCTAATGTCGACACCCCTCCTCTATAATTCCTACAC
CCTTTTTATCAGCTGAAATTTATAGAAAGGTTGAAACTGTTACGACCCTG
CCGGTGCACCCGACAGTCGGATGTTGTTGTCGGGTGTTTGAAGTTAGAAA
TTTAAACACCCGACAGTCGGGTGCACTTTTGTCGGGTGCTACTTAAACAT
ACTACTAAACCATATACTTTTCTGAAAGCCTATGATCAGGGCTACATGAT
GAGCTGGTCGACTTTTTAATTTTTTACTGTCATTAATAATGCTGACGTCA
TCAAAATCGCCATTTTTTGGACTTTTTTTTTATCTTGGGCGCTTTTAACA
GCACCCGACATGTAAGTTAGGAATTTTAGCACCCGACTGTTGGGTGCGCT
ATTGTCGGGTGTTTTTGCAAATTTAGAAATTTCAGCACCCGACAAAACAC
CCGACAGCACCCGACTGTCGGGTGCACCGGCGGCGGCAGGGTCGTAAACT
GTTTTTCTTTGTTTTTCTTTAGTGGTCAGAGAGGAATAATCCTTTTTCAA
TCAGCGATTCAAGCTTTCATATTAGTTCTTTCTCTAAAGAAGGGTGTCAG
AATTAGACGAGGAGGGATGTTGATATATTATAAGATTATTTAGATAGACC
AACTCACGGTAGTACGACCGGTACGACTATAATACATGCCCACAATGCCA
CATCTGATAAATTCAGGTTTCTATGAATATAAGGGACGAAACAACCACAT
TTCCAAAGTTATAATTCATGCTAGAGTAGGACTACTGTAGAGCTTTTAAT
TAAATTGATAAAACACCATACCTTTGGTATAACCACTTTCAGAGCCACAA
AAGCAGTTACACTCCCAGCAAGAAAGCTTGCTCCTAATTTCAAGAGATCT
TCTTGCTTCATATTGATTTGTGAACAAATAAGCTAGGGAAGAAAAGAATG
GCAGTAGTTGTATATAAAGAGAAGAATATGAAGACACCTGAAATTCCAAA
TTTGTTTTTCGAATTTGTGCACAAAAATACCTGCCTTTTCTTCGAGCCAC
AGATGTCTTATAAAAATATTAGAGTGGACTGCTT

Coding sequence (CDS) from alignment at scaffold_253:1042364..1048847-

>TCONS_00055555 ID=TCONS_00055555|Name=TCONS_00055555|organism=Clytia hemisphaerica|type=CDS|length=5796bp|location=Sequence derived from alignment at scaffold_253:1042364..1048847- (Clytia hemisphaerica)
TGGTCGAACAACGAATGTGGGTGTCTTTGCAAGACGTCACCTCAAAGATG
CCCCTTCAGGAAAGAATGGGACAAAACAAAGTGCAGTTGTCAATGCATCC
CTAAGAAATGTGGAGTTGGAGAATCACAAGATCCCACCACTTGCTATTGT
GCCAAAATATGAACCGATATACTCAAGAGACAGTGCGGTTGAATCACCAC
AAGAAATGTGAATGCAGGTGTAAAATAGATGCCACAGACTGTTCACAAAC
ACAAACGTTTGATCCAAATCTTTGCACGTGTGTTTGCAGCGGACAACTAC
AACCTTGTGCTGAAAACAAAGTGGTGATGAAGATTTAGGCTGTCAACCTC
GACCAACCATATACAGCCTCACTGCAAGTCACAACTACTTCGATTACCCT
TCGTGTTTCACCCTATACCAATGTGGTGGTTGCTGTAATTCAAAACCTGG
AAATATTTGTCGACCGACTGAACTATCTGTTAAAACTGTATCTCACGTGA
GGCTGTCATATATTACAATTAAAAAGAGACGGATAAGCCTTGCTAAACCA
CAAGGAGAAACACATACGTTTCTCGAAACACATACTCTTCTCGGAACAAC
AGATTCTGATTCGAAACTGGAAGCTCCAGAGTTCGAATTTTTCATTAAAA
AGCCAACGATCGGGAAAGAACAATCTCTTGTTGGTGAAAGCAATAGACAC
ACGATACTGGGAACATCAGAGAAGTCTTCTGAATCTGTCAAACTCAATGG
AAGTTGCAAATAAGATGAAGAAAGTAAAAAACATGGAAGATTTTTTGAGA
GTTTTCAAAGTGCCTTATGATGAGGATTTCATCAGTTTTTGTTTTGTTGG
TTTTTGTCAGTCTATGCTTGGCCAAGAAAGGATATTATCGAAAAATTCAA
GATGGTAGATTCAAACCTGTGCGTGTTATACGTCCAAAAGTTGTCACTCA
GTTTGACAAAAATAAGTGGTCGAACAACGAATGTGGGTGTCTTTGCAAGA
CGTCACCTCAAAGATGCCCCTTCAGGAAAGAATGGGACAAAACAAAGTGC
AGTTGTCAATGCATCCCTAAGAAATGTGGAGTTGGAGAATCACAAGATCC
CACCACTTGCTATTGTGCCAAAATATGAACCGATATACTCAAGAGACAGT
GCGGTTGAATCACCACAAGAAATGTGAATGCAGGTGTAAAATAGATGCCA
CAGACTGTTCACAAACACAAACGTTTGATCCAAATCTTTGCACGTGTGTT
TGCAGCGGACAACTACAACCTTGTGCTGAAAACAAAGTGGTGATGAAGAT
TTAGGCTGTCAACCTCGACCAACCATATACAGCCTCACTGCAAGTCACAA
CTACTTCGATTACCCTTCGTGTTTCACCCTATACCAATGTGGTGGTTGCT
GTAATTCAAAACCTGGAAATATTTGTCGACCGACTGAACTATCTGTTAAA
ACTGTATCTCACGTGAGGCTGTCATATATTACAATTAAAAAGAGACGGAT
AAGCCTTGCTAAACCACAAGGAGAAACACATACGTTTCTCGAAACACATA
CTCTTCTCGGAACAACAGATTCTGATTCGAAACTGGAAGCTCCAGAGTTC
GAATTTTTCATTAAAAAGCCAACGATCGGGAAAGAACAATCTCTTGTTGG
TGAAAGCAATAGACACACGATACTGGGAACATCAGAGAAGTCTTCTGAAT
CTGTCAAACTCAATGGAAGTTGCAAATAAGATGAAGAAAGTAAAAAACAT
GGAAGATTTTTTGAGAGTTTTCAAAGTGCCTTATGATGAGGATTTCATCA
GTTTTTGTTTTGTTGGTTTTTGTCAGTCTATGCTTGGCCAAGAAAGGATA
TTATCGAAAAATTCAAGATGGTAGATTCAAACCTGTGCGTGTTATACGTC
CAAAAGTTGTCACTCAGTTTGACAAAAATAAGTGGTCGAACAACGAATGT
GGGTGTCTTTGCAAGACGTCACCTCAAAGATGCCCCTTCAGGAAAGAATG
GGACAAAACAAAGTGCAGTTGTCAATGCATCCCTAAGAAATGTGGAGTTG
GAGAATCACAAGATCCCACCACTTGCTATTGTGCCAAAATATGAACCGAT
ATACTCAAGAGACAGTGCGGTTGAATCACCACAAGAAATGTGAATGCAGG
TGTAAAATAGATGCCACAGACTGTTCACAAACACAAACGTTTGATCCAAA
TCTTTGCACGTGTGTTTGCAGCGGACAACTACAACCTTGTGCTGAAAACA
AAGTGGTGATGAAGATTTAGGCTGTCAACCTCGACCAACCATATACAGCC
TCACTGCAAGTCACAACTACTTCGATTACCCTTCGTGTTTCACCCTATAC
CAATGTGGTGGTTGCTGTAATTCAAAACCTGGAAATATTTGTCGACCGAC
TGAACTATCTGTTAAAACTGTATCTCACGTGAGGCTGTCATATATTACAA
TTAAAAAGAGACGGATAAGCCTTGCTAAACCACAAGGAGAAACACATACG
TTTCTCGAAACACATACTCTTCTCGGAACAACAGATTCTGATTCGAAACT
GGAAGCTCCAGAGTTCGAATTTTTCATTAAAAAGCCAACGATCGGGAAAG
AACAATCTCTTGTTGGTGAAAGCAATAGACACACGATACTGGGAACATCA
GAGAAGTCTTCTGAATCTGTCAAACTCAATGGAAGTTGCAAATAAGATGA
AGAAAGTAAAAAACATGGAAGATTTTTTGAGAGTTTTCAAAGTGCCTTAT
GATGAGGATTTCATCAGTTTTTGTTTTGTTGGTTTTTGTCAGTCTATGCT
TGGCCAAGAAAGGATATTATCGAAAAATTCAAGATGGTAGATTCAAACCT
GTGCGTGTTATACGTCCAAAAGTTGTCACTCAGTTTGACAAAAATAAGTG
GTCGAACAACGAATGTGGGTGTCTTTGCAAGACGTCACCTCAAAGATGCC
CCTTCAGGAAAGAATGGGACAAAACAAAGTGCAGTTGTCAATGCATCCCT
AAGAAATGTGGAGTTGGAGAATCACAAGATCCCACCACTTGCTATTGTGC
CAAAATATGAACCGATATACTCAAGAGACAGTGCGGTTGAATCACCACAA
GAAATGTGAATGCAGGTGTAAAATAGATGCCACAGACTGTTCACAAACAC
AAACGTTTGATCCAAATCTTTGCACGTGTGTTTGCAGCGGACAACTACAA
CCTTGTGCTGAAAACAAAGTGGTGATGAAGATTTAGGCTGTCAACCTCGA
CCAACCATATACAGCCTCACTGCAAGTCACAACTACTTCGATTACCCTTC
GTGTTTCACCCTATACCAATGTGGTGGTTGCTGTAATTCAAAACCTGGAA
ATATTTGTCGACCGACTGAACTATCTGTTAAAACTGTATCTCACGTGAGG
CTGTCATATATTACAATTAAAAAGAGACGGATAAGCCTTGCTAAACCACA
AGGAGAAACACATACGTTTCTCGAAACACATACTCTTCTCGGAACAACAG
ATTCTGATTCGAAACTGGAAGCTCCAGAGTTCGAATTTTTCATTAAAAAG
CCAACGATCGGGAAAGAACAATCTCTTGTTGGTGAAAGCAATAGACACAC
GATACTGGGAACATCAGAGAAGTCTTCTGAATCTGTCAAACTCAATGGAA
GTTGCAAATAAGATGAAGAAAGTAAAAAACATGGAAGATTTTTTGAGAGT
TTTCAAAGTGCCTTATGATGAGGATTTCATCAGTTTTTGTTTTGTTGGTT
TTTGTCAGTCTATGCTTGGCCAAGAAAGGATATTATCGAAAAATTCAAGA
TGGTAGATTCAAACCTGTGCGTGTTATACGTCCAAAAGTTGTCACTCAGT
TTGACAAAAATAAGTGGTCGAACAACGAATGTGGGTGTCTTTGCAAGACG
TCACCTCAAAGATGCCCCTTCAGGAAAGAATGGGACAAAACAAAGTGCAG
TTGTCAATGCATCCCTAAGAAATGTGGAGTTGGAGAATCACAAGATCCCA
CCACTTGCTATTGTGCCAAAATATGAACCGATATACTCAAGAGACAGTGC
GGTTGAATCACCACAAGAAATGTGAATGCAGGTGTAAAATAGATGCCACA
GACTGTTCACAAACACAAACGTTTGATCCAAATCTTTGCACGTGTGTTTG
CAGCGGACAACTACAACCTTGTGCTGAAAACAAAGTGGTGATGAAGATTT
AGGCTGTCAACCTCGACCAACCATATACAGCCTCACTGCAAGTCACAACT
ACTTCGATTACCCTTCGTGTTTCACCCTATACCAATGTGGTGGTTGCTGT
AATTCAAAACCTGGAAATATTTGTCGACCGACTGAACTATCTGTTAAAAC
TGTATCTCACGTGAGGCTGTCATATATTACAATTAAAAAGAGACGGATAA
GCCTTGCTAAACCACAAGGAGAAACACATACGTTTCTCGAAACACATACT
CTTCTCGGAACAACAGATTCTGATTCGAAACTGGAAGCTCCAGAGTTCGA
ATTTTTCATTAAAAAGCCAACGATCGGGAAAGAACAATCTCTTGTTGGTG
AAAGCAATAGACACACGATACTGGGAACATCAGAGAAGTCTTCTGAATCT
GTCAAACTCAATGGAAGTTGCAAATAAGATGAAGAAAGTAAAAAACATGG
AAGATTTTTTGAGAGTTTTCAAAGTGCCTTATGATGAGGATTTCATCAGT
TTTTGTTTTGTTGGTTTTTGTCAGTCTATGCTTGGCCAAGAAAGGATATT
ATCGAAAAATTCAAGATGGTAGATTCAAACCTGTGCGTGTTATACGTCCA
AAAGTTGTCACTCAGTTTGACAAAAATAAGTGGTCGAACAACGAATGTGG
GTGTCTTTGCAAGACGTCACCTCAAAGATGCCCCTTCAGGAAAGAATGGG
ACAAAACAAAGTGCAGTTGTCAATGCATCCCTAAGAAATGTGGAGTTGGA
GAATCACAAGATCCCACCACTTGCTATTGTGCCAAAATATGAACCGATAT
ACTCAAGAGACAGTGCGGTTGAATCACCACAAGAAATGTGAATGCAGGTG
TAAAATAGATGCCACAGACTGTTCACAAACACAAACGTTTGATCCAAATC
TTTGCACGTGTGTTTGCAGCGGACAACTACAACCTTGTGCTGAAAACAAA
GTGGTGATGAAGATTTAGGCTGTCAACCTCGACCAACCATATACAGCCTC
ACTGCAAGTCACAACTACTTCGATTACCCTTCGTGTTTCACCCTATACCA
ATGTGGTGGTTGCTGTAATTCAAAACCTGGAAATATTTGTCGACCGACTG
AACTATCTGTTAAAACTGTATCTCACGTGAGGCTGTCATATATTACAATT
AAAAAGAGACGGATAAGCCTTGCTAAACCACAAGGAGAAACACATACGTT
TCTCGAAACACATACTCTTCTCGGAACAACAGATTCTGATTCGAAACTGG
AAGCTCCAGAGTTCGAATTTTTCATTAAAAAGCCAACGATCGGGAAAGAA
CAATCTCTTGTTGGTGAAAGCAATAGACACACGATACTGGGAACATCAGA
GAAGTCTTCTGAATCTGTCAAACTCAATGGAAGTTGCAAATAAGATGAAG
AAAGTAAAAAACATGGAAGATTTTTTGAGAGTTTTCAAAGTGCCTTATGA
TGAGGATTTCATCAGTTTTTGTTTTGTTGGTTTTTGTCAGTCTATGCTTG
GCCAAGAAAGGATATTATCGAAAAATTCAAGATGGTAGATTCAAACCTGT
GCGTGTTATACGTCCAAAAGTTGTCACTCAGTTTGACAAAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034940XLOC_034940Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
VEGF related ligandTCONS_00055555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055555-exon-scaffold_253-1575043694:1048509..1048847TCONS_00055555-exon-scaffold_253-1575043694:1048509..1048847Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1575043694:1048108..1048180TCONS_00055555-exon-scaffold_253-1575043694:1048108..1048180Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1575043694:1047587..1047814TCONS_00055555-exon-scaffold_253-1575043694:1047587..1047814Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1575043694:1047031..1047225TCONS_00055555-exon-scaffold_253-1575043694:1047031..1047225Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1575043694:1046583..1046743TCONS_00055555-exon-scaffold_253-1575043694:1046583..1046743Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1575043694:1042364..1046177TCONS_00055555-exon-scaffold_253-1575043694:1042364..1046177Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1048509..1048847TCONS_00055555-exon-scaffold_253-1510915933:1048509..1048847Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1048108..1048180TCONS_00055555-exon-scaffold_253-1510915933:1048108..1048180Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1047587..1047814TCONS_00055555-exon-scaffold_253-1510915933:1047587..1047814Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1047031..1047225TCONS_00055555-exon-scaffold_253-1510915933:1047031..1047225Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1046583..1046743TCONS_00055555-exon-scaffold_253-1510915933:1046583..1046743Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1510915933:1042364..1046177TCONS_00055555-exon-scaffold_253-1510915933:1042364..1046177Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1048509..1048847TCONS_00055555-exon-scaffold_253-1491911889:1048509..1048847Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1048108..1048180TCONS_00055555-exon-scaffold_253-1491911889:1048108..1048180Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1047587..1047814TCONS_00055555-exon-scaffold_253-1491911889:1047587..1047814Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1047031..1047225TCONS_00055555-exon-scaffold_253-1491911889:1047031..1047225Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1046583..1046743TCONS_00055555-exon-scaffold_253-1491911889:1046583..1046743Clytia hemisphaericaexon
TCONS_00055555-exon-scaffold_253-1491911889:1042364..1046177TCONS_00055555-exon-scaffold_253-1491911889:1042364..1046177Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1042364..1048847 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.826283	0.701561	1.29417	1.05899	20.3024	19.2697	18.4032	20.134	19.2299	24.7898	22.0671	22.5653	19.4209	23.5294	9.48655	6.12847	7.15674	6.59981	41.5601	55.579	6.62668	6.25078	1.38077	1.63713	1.44538	1.70911	1.70108	1.01055	0.937155	0.957308
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000072PDGF/VEGF_dom
IPR029034Cystine-knot_cytokine
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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