TCONS_00055534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055534
Unique NameTCONS_00055534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055534 ID=TCONS_00055534|Name=TCONS_00055534|organism=Clytia hemisphaerica|type=transcript|length=1292bp
TGAACGTCAAGCGAAGAAATGAACGAAAGCAATCATCACACCAAACCTTG
TATCTAGGAATATCAGATCGACAAGTCGGAGAACAACAAACTCATCGTTC
CTCCAAAAAACTTAACATATTCAACAAAAAAGTGACGTCAAATGACATCC
AAGAACGAGTGGCAGATTCTGTCAATAACATGGTCAAATACTTCTTCAAG
AACAGTGACGAAAACATGACCAAACTGCTGTGTGGTAACGAAGGTTTCTG
TCAATCCATTGAGCTCGTTTTCAAGTACGGATACAAATCAAGTAAATTCT
TTACCAAGAAGCTATTCGTTTGGGATTACATAGAGCGAGTTCACGACGAT
TTTCTTAACAAGAAGAGTGAAACGGCTTATCTGGAATCAACACAGCTAAA
TATTCGATCATCGTTTTGCATCACCGTTCAAACGATCAATACTGCTGCTC
TCTCCATTGGTAAAGATCAGAAGTTCGAACTGTTCATTTGCTTAGGATTG
AGAGACCATCATTTGCAGAGCTGGTTCCGCCTGCTGCATGATTCGAACGT
TACAAATCATATGTACGAGCAGAACTCTTTCTTCCGTGATGGAACGCTAT
TGAACTTTCTGATAGAGGTACTGGAAGCGTTAAAAGAGTTTAGTGTTGTC
CTAGATAAGTCTATAACGCGTGGAATATAATTGGCTAGTGAGGTCAAATC
TTGGAATATTAGTGTTTGAAGAAGCCCAACCGTAGATTCTGATTGGATAG
AGTCATGACCATGTGAGATATGAATGATGGAACATGTCTCgttttaaaaa
tgataaatCGGGCTATCAGCGCCATTTTAGACAGCGACGGATGataaaaa
acaagataaaactaTTTTTTATACTTTACAGAAAACCGTGGgggtgtttt
tcttttttcttcaatcaaaatttgaaattgaagaaaatatatcttATCAA
CTATTTATGATGTCAAACAGCTTAACGTACCAAAtatatttcttgttttt
tattAGTGTTACTTTTTATATTGGTCCCTTAAAATCACCAtaacaataca
cgtttttttataagaacaaactatgtaagaacataaggctacgatgccta
aaatgttaagaacaaattaagaacattttagggcttTGTGGACTCGAAAA
AAACCCGATTTAGGAAAGTTAGTAAAAATGATCACAAAATGTGGGAAAAT
GAGAACATcctaagaacattttgaggcttaaaaccccaaatgttaagaat
atccaaaggcttcaaaaattttggatgttcttataaaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:812241..818396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055534 ID=TCONS_00055534|Name=TCONS_00055534|organism=Clytia hemisphaerica|type=transcript|length=6156bp|location=Sequence derived from alignment at scaffold_253:812241..818396- (Clytia hemisphaerica)
TGAACGTCAAGCGAAGAAATGAACGAAAGCAATCATCACACCAAAGTACG
TTATTAAATTTTTTAATTGAACTTCGGGGTTTTTTTCTTGGTCAGTTTTC
ATTTGGCTTTCTCGTTTATACACTCCTCCTATTTGAGAGAGATTGTTCAG
CTCTAAGTTATCAAGTATCCCAATTTACTACGTAGGAGCATGAATATATG
TTCATGGTAGGAGATACCCGATGCTTTCCAAAGAGCACGTAAAAAGCTTG
GTGTAATTTAGATGTATGATTTCTATTTTCCCAGCCTTGTATCTAGGAAT
ATCAGATCGACAAGTCGGAGAACAACAAACTCATCGTTCCTCCAAAAAAC
TTAACATATTCAACAAAAAAGGTAACCTTTCTGATAGTTCATAATCTCTC
ACAAAAGTCTCAACCTTGTGAGACCAACGAATCGAGAGCGCTATCCGAAT
CAGAAAAAGCAAACTATAGACTGGAGTCGTTTATAATGNTCCTGTGTCAC
TCTGTCACCAAATGAAATTCATGTGATATTTTTTTAAATCTTAATTCTCC
TCGACTTCCTTTCAGTGACGTCAAATGACATCCAAGAACGAGTGGCAGAT
TCTGTCAATAACATGGTCAAATACTTCTTCAAGAACAGTGACGTAAGCTT
TCTATGACCCTCTTTTATTGTGCGGACATTAACAAGTTGAAATACTCCTC
TTGATAGTAATGACCACTTAACAGACAATTTACATTTGATTGATTTCTTT
TATAAGAACGAACGTATGCCAAAAAATGTACCCCACATTTCTAATACTTT
CCAACAGGATGGTCTGTGATAATATGGGCACACATTGAGTGACCCTGTTA
ACTGAAGCCTGGTAATATAATAAGCTAAAATGATTTCCTTTTTCAGGGAC
CAGTTTAGAGAGAATCTACTTTTATACAACATAATATTCTTACATTCAAA
TATCTTTCACAAGTCACTAATCCTATCCTTCATTTGGTTGTCAGAACGTT
TATTATTCCTGTATTTGATGTTTACAAAAAAAGATCTACTTTTTTTCTTC
CTGTTTTGACAAACTTTCTGTTCTGTGTGGTTGACAAAAACTTTTTTCCG
TTCCGTCAATCATTTCCTTTCTATTCTGCTGGAATTCTATCCAAATCTTG
TACACTGGGCATTCTTTTAATTAGAGTCGTACGGCTTCTTTCGTATAACT
CGGAAACCCCGGCATATTTTAATGTACGAAAACTGAAGGTAGCGAAGAGG
TCATGAGACCTTGCTTTCCAACTACGTTGCCTAAATATCCTTGTGACCAA
AAATTTATTGTAAATCTGAAAACTGTAAATCAAACAAAGAAATCGGCTGA
TATTCTCTCATTCCACAATTTCCAATAATGATTTATATCCCCTTGTCAAA
CCACAGGAAAACATGACCAAACTGCTGTGTGGTAACGAAGGTTTCTGTCA
ATCCATTGAGCTCGTTTTCAAGTACGGATACAAATCAAGTAAATTCTTTA
CCAAGAAGCTATTCGTTTGGGATTACATAGGTAAGTACGGTCATACTCTG
TTTAACAACCAATAGGCTTCCAGACCTTTCCAGACTGGTTGGTTTTTATA
TACGGATTATGGTATTGTTTTTTCATTCTTTCTTTATTTTACAGTTATTT
TTCGTACTGTAGGCTCTGTTTTAAGTAGAATAGACAGCAAAATGGTGCAT
TTTCTCACTATTTTTTTCACTATATACTTGGCATTTAACTACTCAGTGAA
TGTTTGGGACTCTAAAACTTACACTACAAATGCATTATCGCTGTCGCGCT
GTTTACATTACACGATCAATTTCTCGTGAGTTTGTACTTTAATGAAATGG
ATTTCTAGCATGCGTTTATCTTTCAACATGTATTTCTATTTTCCTGCTAA
AACCTTCAGATTATAGATTCGAATCTACTTCCTATCTATAACCCACGAGT
TTTTGTATTCTTCTTTTCCACATGTAATTAGTTCCTATATTAAGCACTCT
GACTCGATTGTTAGTCTTCTACTGCAGTGATCTCCCTTTCAAATGACGAT
CCATTCTAAACTGATTACCTGATTTCCGCATCTCCTTATCTTAGACTTCC
ACTTTTTTGTAATCGATATATTGATACGGTAATTATCGCTATTCACCACA
TGTTAAAAACAACATTCCTTTTCTTTTATTCTTTTAAAAAAGTGCTAAAC
CACTCTTTAGAATCTGGTTAAGAATTAACTGAAACTGTTGTCAAATTTAA
GGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTGAAATGTGTT
TTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACATTTTCTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGAAGAAAATGAAGACTTT
TGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCGCAAAATTTGAA
ATAGTTCAATTCTTTGCGGACAGTGTAAAGAAATTTTGAAACAAAAAGGT
TAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAAGGTGATGCAACA
TATTATTAACGTCTTTTTAAAGTTCGTAACGTCATTTCTACAATTAAATT
CTTAATTACTCTGAAGGGATTTGATTAAAAAGCAATTTATAAAGGCAATT
CTTTGTTAAAAGTGTTAAAGAACCTAAAACATAACTTTTATGTTCAAATA
CTAAAATCAATTTTCCGACTATGGTCAGAGCCCTTAACTTTATGATAACT
GGCTGCGTGGCAGGCTTTAACCAATTATTCCCCAGAATTTCCTGTTTACT
ATTTCAATCCTCGTGCATATTCGAAAGTGACGAATTTTACATCGAGCAGA
TGATTTGGAGGCGAGAGAAACATGTTTTGCCAACCCTTCGAGATTTAGAA
GAAAAAAATGTTTGACCACTCTTCCCATTTTGATTCTTTTCAGAGCGAGT
TCACGACGATTTTCTTAACAAGAAGAGTGAAACGGCTTATCTGGAATCAA
CACAGCTAAATATTCGATCATCGTTTTGCATCACCGTTCAAACGATCAAT
ACTGCTGCTCTCTCCATTGGTAAAGATCAGAAGTTCGAACTGTTCATTTG
CTTAGGATTGAGGTAAATTCATTTCGCCATAATCATTTCAAAAAACAATT
TTTGTACTTTGAGAAAAACAGAAGAGCGGGAATTCTCTTATCGTCCTTTT
GAGCAAAGTGCTAAGTTTTTCCACGTTGGACTGATTTTCGCCTTTTTGGC
CCAAAACTCCGAAAGAATTCATAAACCTGGGTTTATTGTTGTGTAAAGAA
TACTTTCCGTCTGAGGCGAAAAACTTTGTGTTGAACACTGGAGCGATATA
ATAAACTATGGGGTCAAGAATTTCCATTTTAGAGGTGTCGGGTATCTTAA
GAGCGAAAACTTAGAACTTAAGACCTTAATCTTCTAAAAATGCGGGGAAT
ACTTTACCGCAGAAAATCCATTGATTAATAACTGAACCTTGAACTCTTAA
GGGTTTTTAACCTTTGTTGAGGCGCAATGAACTAAAAATCCCGTTTGTAT
CGAGTTACGTAAAAAGTGTTCAAATAGTAGGTGAGCTCTAATGATTCTAA
TGTTTATTTACATAACGTTTTATGTCTGTCATCATGAAATGGTGAAAAAG
GATACACGAGCCCCTTGTTTATTTCTCCTTGACTTGTTCATTTCGTTGGT
CCTGTCTTTTTTCAATCATCGCCAATACCTCTTCAATAAGACCCATTTGA
TATAAGATACCTCGATGGTTCATTTAGAGACTTTTTGATTAAAAGTCTTG
AATTTCTAGTTATCTTTGGACCCGCATATTATACATATAAATTCGAAATT
CACGTGAATTCGTGTGATTTCTAATTTGATCAAACCTAATATTCTAAGCA
CATTTTGGAATTACAAACGAATCGTTCTTAATATACACAAGCTTTGAGTT
TATAGAGTTTGTAGATGTAGATAAACTTAATACGTGTTTTTACCTATATT
CTTACATGCCTGAGATAAAACAACGAACCGATTCGATTTATTGACTTTTC
TGCTTTTGAAATTCTTGTTATTTGCATGTTTCTATGTCTCTGTTGACTCT
CGGTCTCTTCTCTGCAAAATCTTTCAACATTTGCTTGTTTGCGGCTTGAA
AACAAGCTCTTAAATAGATTGTCGGTATTTGTTACCCTCAAATATTAGAA
GCTCATGATAAAGCTCCCTAAATGGTTCTTTTGAAAACAAATTCGATAGC
TACTGCTTGTAATTCATCTGTTAGCTCGTGTGTGATTTTTGACTCAAGAA
CCCTAGTCGTAGGCGCAAAATCTAAATAACAAAAGTCCCGCGTTATCGTG
GTTCTTACACCAATGCTGGATTTAAAGTAAATTCGGAGTAAAACCTTGCA
TTAGATTTTTTTAATGTTTTGCCTTCCTTTGATGCACGGTAGACCTCCTG
GTTATTCGTTCCAAGGGTAATGTCAATTTATTTCAATTTTACTGGGAGCT
CGAACATGAAAATCTATTTTCCAACTTATTGGATCTTACTTTGGATAACC
GAAAATTTCTAATACGTGGGGGGGGGGTCAAATAACTGGGAGGTTACCGC
ATTGGCAGCTCATTGCCCATTTATAAGCTCATTAGGGATTGTTTGAGTGC
TCTAGTATAGTGGTTATTGCCGGGTGACTATGGTTCGATTTCCACTCGCA
GTGATTCCTATTGTGAAGTTAGTCCAAGTTATTCACTGTGTGCTCATTTA
AAGCGCGTCTATAGTTGCGCAAATGGGCCCCAGAGCCTCATGTAACTCAA
GCAATTGTGATTTTGGTTTGAATTTTTCACAACGTTAAAACCCTTGTTTT
TCTCCTTTATTTTCAGAGACCATCATTTGCAGAGCTGGTTCCGCCTGCTG
CATGATTCGAACGTTACAAATCATATGTACGAGCAGAACTCTTTCTTCCG
TGATGGAACGCTATTGAACTTTCTGATAGAGGTACTGGAAGCGTTAAAAG
AGTTTAGTGTTGTCCTAGATAAGTCTATAACGCGTGGAATATAATTGGCT
AGTGAGGTCAAATCTTGGAATATTAGTGTTTGAAGAAGCCCAACCGTAGA
TTCTGATTGGATAGAGTCATGACCATGTGAGATATGAATGATGGAACATG
TCTCGTTTTAAAAATGATAAATCGGGCTATCAGCGCCATTTTAGACAGCG
ACGGATGATAAAAAACAAGATAAAACTATTTTTTATACTTTACAGAAAAC
CGTGGGGGTGTTTTTCTTTTTTCTTCAATCAAAATTTGAAATTGAAGAAA
ATATATCTTATCAACTATTTATGATGTCAAACAGCTTAACGTACCAAATA
TATTTCTTGTTTTTTATTAGTGTTACTTTTTATATTGGTCCCTTAAAATC
ACCATAACAATACACGTTTTTTTATAAGAACAAACTATGTAAGAACATAA
GGCTACGATGCCTAAAATGTTAAGAACAAATTAAGAACATTTTAGGGCTT
TGTGGACTCGAAAAAAACCCGATTTAGGAAAGTTAGTAAAAATGATCACA
AAATGTGGGAAAATGAGAACATCCTAAGAACATTTTGAGGCTTAAAACCC
CAAATGTTAAGAATATCCAAAGGCTTCAAAAATTTTGGATGTTCTTATAA
AAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034931XLOC_034931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055534-exon-scaffold_253-1575043694:818352..818396TCONS_00055534-exon-scaffold_253-1575043694:818352..818396Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1575043694:818026..818112TCONS_00055534-exon-scaffold_253-1575043694:818026..818112Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1575043694:817755..817831TCONS_00055534-exon-scaffold_253-1575043694:817755..817831Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1575043694:816867..816990TCONS_00055534-exon-scaffold_253-1575043694:816867..816990Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1575043694:814785..814953TCONS_00055534-exon-scaffold_253-1575043694:814785..814953Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1575043694:812241..813030TCONS_00055534-exon-scaffold_253-1575043694:812241..813030Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:818352..818396TCONS_00055534-exon-scaffold_253-1510915933:818352..818396Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:818026..818112TCONS_00055534-exon-scaffold_253-1510915933:818026..818112Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:817755..817831TCONS_00055534-exon-scaffold_253-1510915933:817755..817831Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:816867..816990TCONS_00055534-exon-scaffold_253-1510915933:816867..816990Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:814785..814953TCONS_00055534-exon-scaffold_253-1510915933:814785..814953Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1510915933:812241..813030TCONS_00055534-exon-scaffold_253-1510915933:812241..813030Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:818352..818396TCONS_00055534-exon-scaffold_253-1491911889:818352..818396Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:818026..818112TCONS_00055534-exon-scaffold_253-1491911889:818026..818112Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:817755..817831TCONS_00055534-exon-scaffold_253-1491911889:817755..817831Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:816867..816990TCONS_00055534-exon-scaffold_253-1491911889:816867..816990Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:814785..814953TCONS_00055534-exon-scaffold_253-1491911889:814785..814953Clytia hemisphaericaexon
TCONS_00055534-exon-scaffold_253-1491911889:812241..813030TCONS_00055534-exon-scaffold_253-1491911889:812241..813030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:812241..818396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.64551	3.10004	3.43504	1.93819	0	0	0	0	0.435057	0	0.209987	0.655856	1.43956	0	0.0358176	0.490159	0	1.3862	0.195994	0.859945	2.33681	2.33206	2.62635	1.47039e-08	0	0	1.8727	4.92731	2.10867	1.49132
Blast
[Close]
BLAST of TCONS_00055534 vs. Swiss-Prot (Human)
Match: DEN5B (DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 5.568e-39
Identity = 78/222 (35.14%), Postives = 127/222 (57.21%), Query Frame = 3 
Query:   69 RQVGEQQTHRSSKKLNIF-----NKKVTSNDIQERVADSVNNMVKYFFKNSDE--NMTKLLCGNEGFCQSIELVFKYGYKSSKFFTKKLFVWDYIERVHDDFLNKKSETAYLEST------------QLNIRSSFCITVQTINTAALSIGKDQKFELFICLGLRDHHLQSWFRLLHDSNVTNHMYEQNSFFRDGTLLNFLIEVLEALKEFSVVLDKSITRGI 677
            R   +Q++  ++++L+I      N K  +  IQE + ++VNN+VK+F K   E  ++T LLCG  G   ++E VF +G+KS++ F K +F+WD+IE+V           AY E+T            Q +   +FC  V  INTA  +IGKD KF++ +CLG RD  L  W  LL +      MYE+++  RD   +N LI +L+ +++F++VL+ S+ +G+
Sbjct: 1061 RTPPQQKSPTTARRLSITSLTGKNNKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKV----------VAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGV 1272
The following BLAST results are available for this feature:
BLAST of TCONS_00055534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DEN5B5.568e-3935.14DENN domain-containing protein 5B OS=Homo sapiens ... [more]
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