TCONS_00055517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055517
Unique NameTCONS_00055517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055517 ID=TCONS_00055517|Name=TCONS_00055517|organism=Clytia hemisphaerica|type=transcript|length=1912bp
TTCGATTTCACCGgactttgaaatttcaaaacaaattttaaagaagaaag
aGCCAACACATCACCATCACTAAGTTTATTGACTGACTTTGGACTTTTTA
TACCGTGACATACTCATCTGTTGTGTTTCTAGATACAAATTTATCATGGC
AAGCCCAAGGACGAGAAGAGTATTGCGAGAATTAAAGTTCAAAGATGGAA
ATAATACATGTTTTGAATGCAGTAGTCACAATCCACAATGGGTCAGTGTG
TCATATGGTATTTGGATTTGTCTGGATTGTTCTGGAAAACACAGAGGTTT
AGGTGTCCATTTAAGttttgtaaGATCGGTTACAATGGACAAATGGAAAG
ACAATGAACTGGAAAAGATGAAGGCTGGAGGAAATAATAAAGCAAAAGAT
TTCTTCACATCACAATCTGAGTACAACCAAGGGTGGTCTATTcaagaaaa
atataattccagAACTGCTGCTTTGTATCGTGATAAGATTACAACAGAAT
CAGAAGGTCGTCCTTGGTCAGAATCCACTTCATCAGCAAAGAATTACACC
CCTCCCACACGGTCAAGTGGTGGCTTGCAAACGTCACCACGTGCCAATAA
AAACATGTCTTCAATGTCCTCAAATTCTTCAAGTAATGGACAAGCAATCA
ATAACATGGATGATCTTGAATCATTCCTTGGAAAATCAAAAGGAGAGATC
AGCAAGGATAAAGAAGACTTCTTCATAAAAAGACAAATGGAAAATGATTC
AAGGCCTGAAAATTTACCGCCAAGTCAAGGAGGAAAATATGTAGGATTTG
GGAGCAGTCCTGCACCATCTCAAAACAATAGTTCGTCAgGCTGGGATAGC
ACTTTATCAAGTTTACAAGCTgGCTGGAATACTTTTTCTATTGGAGCACA
GCAAGTGGCATCAGCAGCTTCCGAAAAGGCTGTCAAAGTAGGTTCAAAAT
TGAACGAAAATGTCATCAAACCAGCGTCCAATAAGgcTCAAGAGTTCGGT
ACTAACGTCTCTGCAAAGgCAAATGAAGGGAAATTGGTTTCTGAAGTGTC
AGCCTCCCTTCAAGGAGCCGCAACGAAgGCATCATCATACGGCATGAAGG
GATGGTATAGCTTACAATCTTACATGGGATACGAGACCAACCCACAACAA
TCTGCTATCACTGCTAATAACCAAGACAATAGTTATCAAAACGGTGGCTC
ATCACAGTCAGGCAGTGGATATGGTGGCTTAACTGGTCAAGATGGTGTCA
ATCCTTTCCAAGCTGCAATGTCCAATCAAAATAGTTCTTCGAATGATTTA
GTTGATTTCAATGATAGTGCTAGTTCAAAATCAAATAGTGGTGGCTGGGG
ATCAACAGGAGACTGGGAGAAAGCGACTCCTGCCAATGATGGTTGGGATG
ACAATTGGGGTGATAGCCCAGCAAAAAAGAAGAACGAGCCAGCAGTTGTT
AAATCACAGACCACAACGGCTACCAAGAAGACAACACCAAAGAAACAGGA
CAGTTGGGGTAATGATGCAGACGAATGGGAGAATTGGTTGAACGATGACT
CAACCTCGTATAAATCAACACCTTCACCTAGAGCTGGCAAAAAAGGAGAT
TAGACATTGCACTATCTACTTTGTGTTACATTGTGTCAAATTATGTTTGG
TTTAATGTAATGTGTATTAAGCAGAATTAGATAATGTATAGTATTCTATG
CAATcttttgtaaaattaaacaaccgACCGTTGAATTAGGAGTTAATTAC
AAGGTTCGTTCTGAAATTAATGCACGTGGAAAGTTGATAAGGGGAACAAG
GCGTACCATGCCCTGATCATATTATAGACGTTATTAGATGATGAATTTAA
TTTGCATTGCAATGCAATAATatataaatgaaatattttttcaatattta
gtAATAGCTGCC
Run BLAST on NCBI

transcript from alignment at scaffold_253:531134..541290-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055517 ID=TCONS_00055517|Name=TCONS_00055517|organism=Clytia hemisphaerica|type=transcript|length=10157bp|location=Sequence derived from alignment at scaffold_253:531134..541290- (Clytia hemisphaerica)
TTCGATTTCACCGGACTTTGAAATTTCAAAACAAATTTTAAAGAAGAAAG
AGCCAACACATCACCATCACTAAGTTTATTGACTGACTTTGGACTTTTTA
TACCGTGACATACTCATCTGTTGTGTTTCTAGATACAAATTTATCATGGC
AAGCCCAAGGACGAGAAGAGTATTGCGAGAATTAAAGTTCAAAGATGGAA
ATAATGTAAGAAATATCTCTACAGATCTATTTTTATTATTTTTAAAAGTA
TTTACGTTTTTCAACCCTTCCAGTCAGTGCCACAAGTGCCTAATTCTCCA
TTCATTCGGTGTCCGGTCATTTTAAATGAAAACAAAAGTTAAAAAGGGCG
CGCTATCAGTGAAAGTTATCGTGACATGTTATGACAGAAAGTATGATTGA
TAAAAACTTGGTGGATGGAGTTATCAAAACAAATTTGTTGTCAAAGAGAT
TTAACAGTAAGTGAAAATACAGGCCAGATATCAACAAGTCCCATGTTGCG
TACACTCGTCCCCAGTTGACGGTATATCGTTTACTTGACTCGTGGGCAAA
AAAACACCCAAGATTTACCACCCTAAAATGCCTTCGATTAAAACAAGGAC
CCTGCCGACGCACCGGACTTAACGAACACCGGACACGCGAAAGTCCGTTG
TAAAATGAGAATTTTTTTTACCACCGGACAATTTCTACACCGGACTTAAG
GAAGTCAGATGTCCGGTGTCGGAGAAGGATATTTTTTCCCACCGGACAAT
CAAAACACCGGACATGACCAGTCCGGTGCGTCCGGTGTTTCTTGATTTTT
TGTTTCATAAATGTCCGGCGTTCAAAATTCCCTGTATGCAACACCGGACT
TATTGCGTCCGGTGTAGCGAAAAGATACTTTTTGCCACCGGACAAATAGA
CCTTTTTTCAAAGAGGACGTCCTGTTGAATAATTATGTACTCCAGCCAAA
AAAACAATGATAGAGCCATGCATAATTACTGTATCATGCATATTGTAATA
ATTATGCATGGTTTTATCATTGTTTTTCTGCTGGACTACATAATTATTCA
ACAGGGTGGCCTCTTTGAAAAAAGGTCTATACACCGGACAGTCCGGTGCG
TCGGCAGGGTCCTATAAAACACTGCAGGAGAACCACTCCAATTCACCGCC
TCTAAATTAACGCCCTAAACACATCCCAATAACACCATTGAAACGGTCTA
ATTACCCACCCCAATAACACCACAGAGATGGTCTTTGCTACGACCAACTC
AAAACGCAACCCACTCAAAAGATTTTTGCAAGCCAAACAAACCAATCACA
AGCTTCTTATTAACAATACCCATTATCAAAATAACCAATCAAAAATCATG
CCACAAAAAGATTAAAATTAACCATTGTGCCAAAGGAAATGGACTTTGAT
CTGAGTGACAAAATATTAAACGGTGAGAATTTGGTAATTTTTTAGCCCTT
ACACCCCCAGTCCAGTCCAGGAAAAATGAGTTATGCACCAATGATATCTT
AATCAATCCTCTGCAAAATGACTGAAGCATTGTAACATATTTGTATGCCC
ATGGTTCTTCGGTACTCATTTATTTTCCAATACCCTACAGCCCTCTTGTT
AAAGGATATTTTCACCAGTCACTAGGTTATCTAAACGCAAAAAATCTACA
AAGAAGACCTTCTCATTTGTAGATGAGTATCATGAGATTGCTTCTTGGAT
GAGCTGAAAAACCAGCTCAAACCTTTTGAAAAAAGATTGTTTATGTTTTG
CCTTGCAACCGCGTAGGGGTTTGGAAACCAAATGAGTGACATAACACGCA
ATAGGTTTATGAAATTAACATTTTCAAAAACTATGAGAAGTTTCCTAGAA
TTTGAGCCATAAATGAAAAAATTTGAGCCAAGTCAACCTTGAAAACTAAT
TTGAAGATCAACTTCCCAAGAAAATTATCTATGGGGGAGACGGAACCTAG
CCGGATACTGCCGGATAGGCTATTTCTTGGAAATTTTGCCTGACTTCAAA
CACTGACCCATTTACATACGTGCGGGATAATTTTTACTTTAGTGTATAAG
CTAGGCCTAACAAATCAAAGCACTGTCTTGGGAATTGAATAACAAAATTT
GGTTGGTTGATTTTGGCTGCTGCACGCTTAGCAATCTGTCATTTTGTCCC
ATTTCAAGTTTTCAAGTTTTAATTAAATGTCTTGGGATCTTGAACTTGAT
TCCGGTAACTCTCATCCTTGTTGTTGCAATTACATCCTGTACTGTAGATG
ACTGCTATTGTTTTTTTCTGAAAGCTTGATTTCCTAGTGTGACTAACTGC
CAGACAGTATAAACTAAAACTTGTATATCAAGATTACAGGATTTCAACTG
CAGGCAACTTTTACTTACGTTTTCAGTGGTTTCAGTTTCGATTTCGAGCC
AAAATCTTATCAACAAAGTGCTCACCCATAGTTACGGTTGTTTGTGCAAA
ATTCCAAACATAGAAAATTTTCCAAATCCACAATTTTGATTTCAAAAAGT
TCAGTAATAAAAAATGAAACTTTTTCATGTTTCACTTTTTGCACCAGTTC
TTCAAAATGAAAATATTTAAGACTTAAATTTTTTATGGCACTTGTTGACA
ATCTAACTCTTGCATCAAATTTCCGCTTACTTTGATGAATTGAAAATGAG
AAATAGTCTACACCTTAGGATGATCACAGATTGAAACAAATAAAAGAAGT
GAAATAAAGAGTGAGATTTTACAGCTGCCCGTCAGGCAAGGCACTGAGAG
GCCACAGGGGCTGAAAAGTAGGGCCATGTGAAATGCGGCAATATTATTGG
TGGAAATTCAATAAACAGTCTGCAAGGAGCGCCACGAAGCAATCAGTAGA
AGAGACCACTTTTGTTTTTTTGCAGATTTCAATATAAACTTCTCATAGGG
ATTACTTGTCAATGTGTTGTGTCAACTTGTCAGCATTGTATTGTTGCAAA
GGGAAAGATAAAAGAGGTCAGACTAGCCTAGTTTCTAATCCTGATATAGG
AGTTTAAGTCTAGACTGCCAGATGATCTCTCGTGTATAATATTACAAATT
AGTCATCACAATCTTTTTAGCGTATTATAGGCAAAAAAGGGTTTGTTTAC
TTTCCAAAGCCAAACCATAAAGAGAAAAGAAAATGTGCCGGCAACTTTTT
CTTGAATTGCAGTGAAGGTGTATTTGTGGTCAATTCTCAGGATTTCAAAC
AATAGGGTTTGATTTATGCTTGATTGATTTGAAATGATAGCCAATTATGT
TAAATTGATTTTCTGCCGACAAAAATACAGGATTGCTATCAAACGAGAAC
CATAAAGAATTCTCAAGGGACTATAAAGTGAATGATAGGTAAGTAAATAA
ATAAGTTTTTCTTAAGTTTAGTTCTCAAACAATTAGCGGGAATTTGACGT
GAGTGCTAGATTTTCAAAGAATCCTTTCTTAATTAGATTTCCAAGGTAAA
ATACATCGTTAAATGTCTATATTTGACATTTTAGGGACTTTCAAATCCAT
TCTTTGCTGATTTGGATAAGTTAATTCCACAAATTGGTTACTTTTCCCGC
AGTCAGAACTCAAATTCGGAATAATACCATTAGAAAATGCACGTACACTG
CTCTTCTGAGGTATCTATCCCAGCTATGGACAGAACTTTGGATTCCGTTT
GTCACAACTTTATATGATTTGGCTCAGTCAGCCAACAGCCTCTTTTGTCT
TCTGGAAGGGTGTCAGCTATGGATGTAAGATAGCAATAGCAAATTAATAG
CATTTCAAGTTTTCATGTAAAACAGATATTCAGAAAGATAACCTAAACCT
ACATACTATGTTCTGTTCTACTTGGGCTTTACTTTCAAAGATACTCCCTC
CCCACAACCTTGTCCCTGTGTATTCCAGGCTTTATTTGAATTACTAACGG
ATGTCAGAGAATACCCTGTGTAGGCTGATGCTATTCCCCCCACAATACTT
CATAAAAAACCTGATTCTAACTACAAAGTTACACTGTGGTGTGTACAGTG
CAACAACTTCAAAATAGAAAAATAACTGAAATCTGGCATTTTGTATTTAG
ATTACTTAATTTTTGGCATTCAAATGTCCTCTTTTTGCTTCTGTATTATT
TGGTGCAAAAACTTGATAATATATGCAGGGAACAAGGTTGTCCTCCTCAT
TTCAATGATATAGCAAATTTGATGTTGGAACTTTATTATTTCAACGTATC
TAATGTTTCTGCAGTTGAAACTCAGACCAAGTTTTCTGACTTTCATAGAA
TTTCAATTTTCCTTTATATAACAAAAGGTTATATTGACAGCTAATCATCA
TTTTAATGACCAAAACAAAAACACTGATGTCTAATGTAATCATGCTTCTG
TTTAAAATTTCATGGGTGGATTTTCAACGTTTTCGAACACTTTTTAANTT
CTGTTTAAAATTTCATGGGTGGATTTTCAACGTTTTCGAACACTTTTTAA
AAAGTAACTTTTTTATTCAATTGAGCATAACTTTTGATTGAATGAACCGA
ATTTAATGAATGACCCATCAAAAGTTAAGTTTAACTTTCTTCCTTCCAAT
GAAAAAGGAATGGTTCTTTTAAAATCTTTAGACCTCGAGTAGATTAACTT
TAAAGAGAGAAACTTTTTTGTGGCGCACCTGGTAGGTTCGATGCCTCCAT
TCATCTGGGAATTTCATCTTTGATTGGTAATTTAATCATATTCTAAATCA
ACCCCATCATTGGGTTCTACCTCTTTCTAAATCTGATGTAACACCTCTCA
TATTCTTAAATATTCAATTTTGAGAATACAGATAAACAAACAACCCCTAG
CCCTGCAGCTAGCCTAGGTGTCCATCAGAAATCTGCCTCATCTTTGGTTT
AATGTTTACATTTTGCATCATTAGACATGTTTTGAATGCAGTAGTCACAA
TCCACAATGGGTCAGTGTGTCATATGGTATTTGGATTTGTCTGGATTGTT
CTGGAAAACACAGAGGTTTAGGTGTCCATTTAAGGTGAGTAAAAATAAGC
ATCGCTTACTTCATTTTAGGGATGAATAATTTATCTTTCATTTATGTCTT
GATTAAAAACCATTAGAGTTACTAGTGAAATAAAAGTCACATTATGCAGG
ATGACTTAAAAACAAATTTGTAATTAATAAAATGTTGTTTTACTCGAATT
CTTTATTATGAATGTATTGATAATATCACTTCGTATTTTTTTTAGTTTTG
TAAGATCGGTTACAATGGACAAATGGAAAGACAATGAACTGGAAAAGATG
AAGGTCTTTAAATTTAACTTTTGAACATTCTTTTTGTTTTGTTTTAAAGA
AAAATCTCACTTCTTCCAACTTTACTTGTTTGAAGCCAATATTTATGAAT
CAAAAATCGATCAAATTTAATTAAGAAGATTTCATGTTGATCATTATCCT
TATTCTTCTTCTTTTTCAATTTGTTAGGCTGGAGGAAATAATAAAGCAAA
AGATTTCTTCACATCACAATCTGAGTACAACCAAGGGTGGTCTATTCAAG
AAAAATATAATTCCAGAACTGCTGCTTTGTATCGTGATAAGGTAAAATGT
TTATCCCAACAAATGGAAAACTTTTTAGCTTTTTTTCCTTTGGGTGAACT
TTAAGAAGAACCGGGTTTTCGTATCGAAATGTCTGTGATTGATCATGAAG
AGGTATGGTCATCTTCTATAATATACTCCTTATAGAATCCAATGGTTTCA
ATAAGAAAATAGAAAACGAAAAGGCAAAATTTATTTTCTGTATTATTTGT
AATAGCAATTTAGTATCATAGAAAATTTTTTTTCCAATGCTTGCAAAACT
TGATGCGATCCTCAAATCTACTATGAATATTTCACGATAATAGAAATTTC
AAAAAGACTTACTTACTCTTTGTGCCTTCATGTCAGATTACAACAGAATC
AGAAGGTCGTCCTTGGTCAGAATCCACTTCATCAGCAAAGAATTACACCC
CTCCCACACGGTCAAGTGGTGGCTTGCAAACGTCACCACGTGCCAATAAA
AACATGTCTTCAATGTCCTCAAATTCTTCAAGTAATGGACAAGCAATCAA
TAACATGGATGATCTTGAATCATTCCTTGGAAAATCAAAGTACTTTGATT
ATCACTTATGATTTATATATTTGATTTTAATTTTCAAAGCTGATTCTAAT
CTAGTCTTCGTCTTCGTCTAGTTTGTCTTTTAAAAGAGACACTGACTGCA
TTTTTTGAATTATTTTTTGGACAACCGAGTCATCTCAAAATTTATACTAT
ATTTAATATTTTTCTCAGAGGAGAGATCAGCAAGGATAAAGAAGACTTCT
TCATAAAAAGACAAATGGAAAATGATTCAAGGCCTGAGTAAGTGTAGCGA
ATTTCTTAGTATATTATTATTATTATTTACGGCCATTTGCTTTGAGTGTT
AATTCTTTTCTGTAGTAATTAAAAGTTTTCTAGATTACTCTATACCTAAC
TTACTTCATATTTCCAATTTTGTGTTTTCTCTTTCAGAAATTTACCGCCA
AGTCAAGGAGGAAAATATGTAGGATTTGGGAGCAGTCCTGCACCATCTCA
AAACAATAGTTCGTCAGGTATAAAAAAATTTGAAATGATTTTAGATTTCC
ATACCAACCTAGAATTAATTTCATTTGATAAACCTTATTTTAATTTCTTT
GAACCACATAGCTGAGACTGTGCCTATTATGACGATATGCCTTCTTCTTG
ACTCTCTTTCTTTTCATCATTTTTGGGTCGCCTCCCTCTTTTCCTCTCTT
TTTAAATGCCTTTTTTAGTATATGTCTCCCATTCGGACTGATTAACCAGA
CTGAATATCGCTTAAGTTTTCATGTCTGAAAAAATTTTTAGTGTAAAATT
CACCATTACTGTGTATTATCTTCTTAGGCTGGGATAGCACTTTATCAAGT
TTACAAGCTGTAAGTATAGACATGTTTGTCTCTTTTTTTCGTTGGAAAAT
ATCTCATATCGTTTCTGCATATTAGCATATAGTCCTGTATGATGAAATTT
TTATAGTCGTACAACTTCTACTTTCAATCTGTCAAAAGTATTTAAAATAG
TACGAGTTTCTCGAAAACTTCATTATATAATTGGAAACGGACTTACGTCA
TTTTCGATTTCAGGGCTGGAATACTTTTTCTATTGGAGCACAGCAAGTGG
CATCAGCAGCTTCCGAAAAGGTAACTTTTCATTTTATATTACAACTATTT
TTTGCCAGTTGGATTGTGTGTAAAGCCGAAGCTTTTGAAGAAAAATAACT
CAATCACGAATCCCTACTTTTCTTGTACTAAATTAGTATGGTTGGAATGA
TCTATTTGAGGATGATCAAAAAATGTTATATGATGCCATAATCACTTTGT
CTTTTTTAACACCTCGCTTGTAAAGATTACACCACCGACAAAGAATCAAT
TTTTTTTATTTTTTTTGTATTTCCAGGCTGTCAAAGTAGGTTCAAAATTG
AACGAAAATGTCATCAAACCAGCGTCCAATAAGGTATATTAATTTCTTCG
CTTTTATATGTTTTATAACTCACGATGTCAATGTTTTGTTGATTACAAAA
TTCTTGTCTTCTTGTCGTAGGATAATCTCCCGGAGGGGCAGCTGGGCAAA
AGGACCGACGGGTATGTGTGGGTCCTAAGGGTACCCTTTCCAATATGTTT
AAAATGCACTGTAAGGTACTGTAAGGGTCGGAAAAACTAGAGATGCACTG
TAAGGGTAGAAATTTCAGAAAATTCTTGAAAAATCTAGATATTTAGACCA
AAAATGCTAGAATTTTGACCATTTTTTGCACGATAGGGATCGAAAATTTG
GGGGAAAATGCACTCTAAGGGTATGATTTTCACTGATTTTTGCTGCACTG
TAAGGGTGCAATTTTAAAAGCCAATTTTTGGCCCGCACGACATACCGTCA
GTCCGCAAACCCAGTGCCCCCCCCCGGGATAATCTAAACAAAGCACAGCG
TGCACTGTTAAATAATTAACAAATAAATACTTGTTTATAAAAGTTAATAA
CGTAATTTAATAACAAATAATTAATCATACTTAAACTCTAAAAGATAAAC
GTAATAATGATTTTCAGTTCTTGCACTCTGCTTACAATCTGACGGATACC
GAAAACCATCATCAAACATCTAACACAACACCAAGACAAAATGCACCATA
TTATAATAAACTTAACGATAATAACACTACAGTAAAAAGAACTTCTTCTT
CAAATTACCGCGCACAGCCTTTCCGCACCTCTTCGACAAATTTTAACAGC
ATTGACAAAGACAAAATAACATCTGGTCCCTACAAGCGTGGTAGGTCTCT
CTTTTCTTTAAAAAAAAGTAATGAATATATTTGGGGATTTCGCAAGGCTA
TTTATATTACATGTACGCGAGGCAAACCTTTTTAAAACTGATACGCCTTG
CTAAAGCCTAAAAACGCTTAATATTTGTCTCCTAAAATGTATTGTTTCTT
CATAATATTAATATTTCTTTAGACTTTGATTCCAATCGTTAATTAAAAAA
GATTAATAAGGTTTCATTACATTATTATATTTTTAATCGGTGTAACTCTA
GTTTCTTTTCTTCACTGTCAAACTATATATATTTTTTAGGCTCAAGAGTT
CGGTACTAACGTCTCTGCAAAGGTTAGTTAATTGTTTTCTTAGCCACGTC
TTCACTTTCTCTCCATCTAGTTATTATAGTTAACTTCGTGGAGTTTATGG
AGTCTCAAATGATTGTTGCAAAAAATATTTTGGCAGACTTTGAATCTTAG
TCACTTTATTTCATTCAACTCAATAGATGAGGTATTGTGGTTTCAGTGCT
TGTTAAACGTATTATTTATCCAGAGGAGGTGGGATTATCAGTTAATATGT
GACTCTAACACACTTACTATGGGTGGTGGTCTAGTTTCAATTGTTTTTCG
AAAACAGCTACTACAGTCGTGTAAGATCATAGTAACTGTAAAAGAACACT
CCTTACTACTGATGATGTCTTGTTAACTACATGGTTCTCTTTGACATATT
AATATCTTATCCTAAAAGAAGTACTTTTTAAACTGACAATATATCTTGAT
TTCTTCTTTGAAGGCAAATGAAGGGAAATTGGTTTCTGAAGTGTCAGCCT
CCCTTCAAGGAGCCGCAACGAAGGTAGGATTTTTTTTATTTTCTCTTGAG
TAAACGAATAAGAGGAGAGCATGACTGGGACAAACATCAATTAAAATGGT
CTTGTGATTCGTCAAGGTTCAATTCTTCTCTTATGATCTATCTTCTTGCA
GAAAAGTACTAGGAATTGAAATTCATCAAAAAGACTTCAAAATGTCTGAT
TTTCACTCTTACTTGTCATTCAGGCATCATCATACGGCATGAAGGGATGG
TATAGCTTACAATCTTACATGGGATACGAGACCAACCCACAACAATCTGC
TATCACTGCTAATAACCAAGACAATAGTTATCAAAACGGTGGCTCATCAC
AGTCAGGCAGTGGATATGGTGGCTTAACTGGTCAAGATGGTGTCAATCCT
TTCCAAGCTGCAATGTCCAATCAAAATAGTTCTTCGAATGATTTAGTTGA
TTTCAATGATAGTGCTAGTTCAAAATCAAATAGTGGTGGCTGGGGATCAA
CAGGAGACTGGGAGAAAGCGACTCCTGCCAATGATGGTTGGGATGACAAT
TGGGGTGATAGCCCAGCAAAAAAGAAGAACGAGCCAGCAGTTGTTAAATC
ACAGACCACAACGGCTACCAAGAAGACAACACCAAAGAAACAGGACAGTT
GGGGTAATGATGCAGACGAATGGGAGAATTGGTTGAACGATGACTCAACC
TCGTATAAATCAACACCTTCACCTAGAGCTGGCAAAAAAGGAGATTAGAC
ATTGCACTATCTACTTTGTGTTACATTGTGTCAAATTATGTTTGGTTTAA
TGTAATGTGTATTAAGCAGAATTAGATAATGTATAGTATTCTATGCAATC
TTTTGTAAAATTAAACAACCGACCGTTGAATTAGGAGTTAATTACAAGGT
TCGTTCTGAAATTAATGCACGTGGAAAGTTGATAAGGGGAACAAGGCGTA
CCATGCCCTGATCATATTATAGACGTTATTAGATGATGAATTTAATTTGC
ATTGCAATGCAATAATATATAAATGAAATATTTTTTCAATATTTAGTAAT
AGCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034924XLOC_034924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055517-exon-scaffold_253-1575043694:541086..541290TCONS_00055517-exon-scaffold_253-1575043694:541086..541290Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:536307..536416TCONS_00055517-exon-scaffold_253-1575043694:536307..536416Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:536038..536095TCONS_00055517-exon-scaffold_253-1575043694:536038..536095Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:535750..535863TCONS_00055517-exon-scaffold_253-1575043694:535750..535863Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:535202..535404TCONS_00055517-exon-scaffold_253-1575043694:535202..535404Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:534954..535022TCONS_00055517-exon-scaffold_253-1575043694:534954..535022Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:534724..534803TCONS_00055517-exon-scaffold_253-1575043694:534724..534803Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:534382..534413TCONS_00055517-exon-scaffold_253-1575043694:534382..534413Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:534121..534177TCONS_00055517-exon-scaffold_253-1575043694:534121..534177Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:533808..533864TCONS_00055517-exon-scaffold_253-1575043694:533808..533864Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:532669..532701TCONS_00055517-exon-scaffold_253-1575043694:532669..532701Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:532168..532227TCONS_00055517-exon-scaffold_253-1575043694:532168..532227Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1575043694:531134..531967TCONS_00055517-exon-scaffold_253-1575043694:531134..531967Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:541086..541290TCONS_00055517-exon-scaffold_253-1510915933:541086..541290Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:536307..536416TCONS_00055517-exon-scaffold_253-1510915933:536307..536416Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:536038..536095TCONS_00055517-exon-scaffold_253-1510915933:536038..536095Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:535750..535863TCONS_00055517-exon-scaffold_253-1510915933:535750..535863Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:535202..535404TCONS_00055517-exon-scaffold_253-1510915933:535202..535404Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:534954..535022TCONS_00055517-exon-scaffold_253-1510915933:534954..535022Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:534724..534803TCONS_00055517-exon-scaffold_253-1510915933:534724..534803Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:534382..534413TCONS_00055517-exon-scaffold_253-1510915933:534382..534413Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:534121..534177TCONS_00055517-exon-scaffold_253-1510915933:534121..534177Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:533808..533864TCONS_00055517-exon-scaffold_253-1510915933:533808..533864Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:532669..532701TCONS_00055517-exon-scaffold_253-1510915933:532669..532701Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:532168..532227TCONS_00055517-exon-scaffold_253-1510915933:532168..532227Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1510915933:531134..531967TCONS_00055517-exon-scaffold_253-1510915933:531134..531967Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:541086..541290TCONS_00055517-exon-scaffold_253-1491911889:541086..541290Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:536307..536416TCONS_00055517-exon-scaffold_253-1491911889:536307..536416Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:536038..536095TCONS_00055517-exon-scaffold_253-1491911889:536038..536095Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:535750..535863TCONS_00055517-exon-scaffold_253-1491911889:535750..535863Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:535202..535404TCONS_00055517-exon-scaffold_253-1491911889:535202..535404Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:534954..535022TCONS_00055517-exon-scaffold_253-1491911889:534954..535022Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:534724..534803TCONS_00055517-exon-scaffold_253-1491911889:534724..534803Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:534382..534413TCONS_00055517-exon-scaffold_253-1491911889:534382..534413Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:534121..534177TCONS_00055517-exon-scaffold_253-1491911889:534121..534177Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:533808..533864TCONS_00055517-exon-scaffold_253-1491911889:533808..533864Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:532669..532701TCONS_00055517-exon-scaffold_253-1491911889:532669..532701Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:532168..532227TCONS_00055517-exon-scaffold_253-1491911889:532168..532227Clytia hemisphaericaexon
TCONS_00055517-exon-scaffold_253-1491911889:531134..531967TCONS_00055517-exon-scaffold_253-1491911889:531134..531967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:531134..541290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3475	16.3032	15.8591	17.4329	39.5278	34.3823	72.0387	82.6857	43.7475	55.946	54.9598	28.2909	29.9451	22.7462	22.9308	23.2294	32.9504	29.9597	22.4371	37.2956	21.4766	23.417	25.1261	28.0152	46.8069	49.8739	102.711	93.499	73.1519	64.666
Blast
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BLAST of TCONS_00055517 vs. Swiss-Prot (Human)
Match: ARFG1 (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 8.685e-71
Identity = 149/338 (44.08%), Postives = 201/338 (59.47%), Query Frame = 2 
Query:  146 MASPRTRRVLRELKFKDGNNTCFECSSHNPQWVSVSYGIWICLDCSGKHRGLGVHLSFVRSVTMDKWKDNELEKMKAGGNNKAKDFFTSQSEYNQGWSIQEKYNSRTAALYRDKITTESEGRPWSESTSSAKNYTPPTRSSGGLQTSPRANKXXXXXXXXXXXXGQAINNMDDLESFLGKSKGEISKDKEDFFIKRQMENDSRPENLPPSQGGKYVGFGXXXXXXXXXXXXXXXXXXXXLQAGWNTFSIGXXXXXXX-----------XXXXXXXXXXXLNENVIKPASNKAQEFGTNVSAKANEGKLVSEVSASLQGAATKASSYGMKGWYSLQSYM 1126
            MASPRTR+VL+E++ +D NN CFEC + NPQWVSV+YGIWICL+CSG+HRGLGVHLSFVRSVTMDKWKD ELEKMKAGGN K ++F  SQ +Y+  WS+QEKYNSR AAL+RDK+   +EGR WS  +S A+N+TPP   +        + +  S  +S+  +    +N  DDL S+ G                              +QG +YVGFG +  P Q       ++ +SSL +GW++F+ GA + ASA           AS+KA ++G  LNENV+KPA  K +           EGK+  +VS+ +   A+K    G KGW  + ++ 
Sbjct:    1 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRTLPSMVHRVSGQPQSVTASSDKAFEDWLN--DDLGSYQG------------------------------AQGNRYVGFG-NTPPPQKKEDDFLNNAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASELGHSLNENVLKPAQEKVK-----------EGKIFDDVSSGVSQLASKVQGVGSKGWRDVTTFF 294
The following BLAST results are available for this feature:
BLAST of TCONS_00055517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARFG18.685e-7144.08ADP-ribosylation factor GTPase-activating protein ... [more]
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