Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055498 ID=TCONS_00055498|Name=TCONS_00055498|organism=Clytia hemisphaerica|type=transcript|length=2329bpRun BLAST on NCBI transcript from alignment at scaffold_253:397214..432651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055498 ID=TCONS_00055498|Name=TCONS_00055498|organism=Clytia hemisphaerica|type=transcript|length=35438bp|location=Sequence derived from alignment at scaffold_253:397214..432651- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055498 vs. Swiss-Prot (Human)
Match: CSN5 (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4) HSP 1 Score: 293.893 bits (751), Expect = 1.603e-91 Identity = 139/182 (76.37%), Postives = 158/182 (86.81%), Query Frame = 2 Query: 2 DVSTQMVNQQFQEPFVAIVIDPTRTISAGKVNMGAFRTYPKGYKPPDESPSEYQTIPLNKIEDFGVHCKQYYSLEVSYFKSALDQKLLDSLWNKYWINTLSSSTLFTNADYVTNQILDLSEKLEQSISQVSRG--MSYAENWDKKDEPGKLQKANKDCCKLNIEALHGLMSQVLKNQLFNNV 541 DVSTQM+NQQFQEPFVA+VIDPTRTISAGKVN+GAFRTYPKGYKPPDE PSEYQTIPLNKIEDFGVHCKQYY+LEVSYFKS+LD+KLL+ LWNKYW+NTLSSS+L TNADY T Q+ DLSEKLEQS +Q+ RG M E D+K E KL KA +D CK IEA+HGLMSQV+K++LFN + Sbjct: 151 DVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSED-KLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 331 The following BLAST results are available for this feature:
BLAST of TCONS_00055498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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