TCONS_00055490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055490
Unique NameTCONS_00055490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055490 ID=TCONS_00055490|Name=TCONS_00055490|organism=Clytia hemisphaerica|type=transcript|length=2034bp
tcaaaataagaaaatataagtGAAAAGTTCCACCATCTCAAAACACATGA
TATTCCTGTACAATGAAAGTGAAACTGACTTCAAATTCAAGACTATAATG
GTAGAGCGGTATCATACTTTGGTACACAATGGAAATGCCATTTACATACC
TCAATGGATCAGGATGACTGAATGAAGTCCTAGATACATTCAAGGTTGTC
CTCTGAAGTTCTTGATGGAGAAATGCGGCTATTGACAGATCTAGCTATTC
ATTGTTGAAGACTTTGGTTTAATGAAGACATGAAAATGATTTTCCAGTGG
AATTGATTTGAGGAAGTTGGTTCAGGAGAAGAGATGAGTTTTCACAATGC
CATCTCAGgaactCCTGGCATCATTTTAATAGTTGTGATTTCGTTCGTTT
TGATCCTGCTCATTTGTGCTGCTCTTTATctcctcaaaaacaaaaaacca
aaGAACGTCCGACAGTCGATTTTTGATCACGAAAAACAAATCAAGTACGG
TATACTAGACTATCCGCAGTCTGGAACTCCAGAATTTCATCCAAACCCGA
TCCAGCCTCCTTAtcaaacgaaagtgaaagtgaaattaATACCTAATAAT
GCGAAAACAAAGACGTCTATAAAATACACAGAACTCGGCGAAGGTGTTGA
AGAAGCTCAGGAGGACCATAAAATTTTGGATGACCTCTCCAGTGGAGAGC
ACTCACCCAATCAAAAAGATTTCCGCAGGTCTGTACATCTTTATAAAGAT
AAAATCACAAACTTTATTTCCAAATATCGTGATGATCATGATTTATCGTC
TTTACCACAAAATGATACGGAACGCAGGATCTGGCAACCGGAACCAGTTG
CGGTCAATCAAACACACCGTTTACAAAGACCAGATAGTGTTCTTTCCAAT
GAACAAGAAATGAGTTTAGGACGATTAACTTTTACCATGTATTATCTACC
TGGCGATGAATATTTAACTCTACTTTTGATATCTGGTCGACAATTGAACT
CATGTGATTCCTTATATAACATTCGTTTGCCAGCTGTCAGTATCGTCATC
GAAAATAATCCCAACACCGAAGTCACTTCAAACCCGGATGAAGCACCTAA
TCCGGAATATGACCAAGAATTCACTTTCACTATCCGCTCAAAAGAACTCT
TCGATGTGGTATTACGATTTACTGTTTGGGATATTATATCGAATAACGAA
ACCAGAGTGCTTGGCTTTTTTCGTGTACCTTTAGCACAATACCAAAAGAC
TCTATTAGCTGGTTCTGATACAGGACCGATTTGTCGTGAAatacaaccct
gtctcaatccTCCTTCTATGGTACTTGGTCAATTACTGATTTCTCTACTT
TACGATTGCGTGACTGACAAAATCTTTGTCACTGTGCGACAATTTCATCA
ATTATCTGTTTCCAAAGATGATCTAGaCATGTATTTGAAAGTATCTCTTC
TCTTGGATAATGACATAATCGTCAGTAAACGTTCCAAAACCTTCACATCA
ACTCGTGATCTACATCTTACACAAACATTCGAATTCAGTGCTCTCTCTGA
TGAACTCGATAAAATGTCGACGGAGACAAGTCCTATATTAAAAGTAGCAG
ATGAGCTCATAACTAATGCTTCTTCTAACTATAAAAAATCACTGGTCATC
AAAGATGTGCGTTCAGTTCGCGAAACTTTTGCATCAGATACTTTAAAGAA
CCATATGGGTGTTTTAATTAGTGTGCGTGCGACCACGGGTACAACGAGGA
ATAAGCGAGTGATTGGACGACTTTACCTTGGTAAAACGAACTTTCCTTTT
AATGATGAGGAATTTCACTGGGTTGAAATGGTGCGTAATTTTGATAGTTC
AATCACACAATGGCATCATTTACGTCTCGATAGGTTATGATAATGTCTCT
GTAAAATCCGTCTTGAAATAGTGTACAGTGGAAAATACAAATTTTGTTAG
AATTCTCCAACTCCTTTTTGATATTCTTTTACacgtccaaaatttttgaa
gccttcagatgttcttaactttttgagttttaag
Run BLAST on NCBI

transcript from alignment at scaffold_253:361587..366692-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055490 ID=TCONS_00055490|Name=TCONS_00055490|organism=Clytia hemisphaerica|type=transcript|length=5106bp|location=Sequence derived from alignment at scaffold_253:361587..366692- (Clytia hemisphaerica)
TCAAAATAAGAAAATATAAGTGAAAAGTTCCACCATCTCAAAACACATGA
TATTCCTGTACAATGAAAGTGAAACTGACTTCAAATTCAAGACTATAATG
GTAGAGCGGTATCATACTTTGGTACACAATGGAAATGCCATTTACATACC
TCAATGGATCAGGATGACTGAATGAAGTCCTAGATACATTCAAGGTACCT
AAAGCGTCGTTTGTTTGTTTGTTTTTATTCGCCCTGCATACCTTTTGGTA
TAAAATTCTGAAATGCCGATTCAAATATTTTTCATCCATTTTGTTGATCC
TGATTCTAATGAATATGAAATAAATAAATTAACTCGATATTTTCTTTTAG
CAGAAACTTCTTATTGGACTCATTTAGATTTCCTTGTCAAGTCTTTGTGT
GATAAACGACTTATTTAAATCATACCCCATTATGAAATATTTTTACTTGT
AGGTTGTCCTCTGAAGTTCTTGATGGAGAAATGCGGCTATTGACAGATCT
AGCTATTCATTGTTGAAGACTTTGGTTTAGTAAGTATTGTGTGTTGAATT
CTGCTACTCAACTTTTTGGGGTAGTTAAACCATGTACAACTTGTAGTGTA
GACGTCTTCTTTTTCGCTTTCAGAAGCAACATTAGAACGTTTTTCCCCCG
TTTTTTTTTACCTGGTTGTATAAAACGATGTATTCATGTTGTGACATTTG
TGACTACTTATAAATATGTTCATCAAAATTGTTGTCTGTGTTTTTTACAT
TATAAAGTGTTTCCTCATATATACTATATTTAAACCAATCTTTATTGAAA
AGAACAGTATTGCTGTCAACCCCTTTTGAAATGCTTAAAAAATAGTATTC
TCTTTTGTCCTCTTTTGATTGCACTGTTTGAATTAAAAGCATGTTTCTTA
CAAGAGATTCTTTTTGAGTTGTCTGAAGAGTACCAAATGGTCTTACTAAG
CTGTATTCAATGTTCTTTTTGACTGAAAATTTTACTGCATAAATTATAGA
TATTTCTACTTGAACCAGAATTTTACAAATTTCCCTGTTAAAAGAAACTT
AAAGATGACGTTTTTATAATTTGCTGAGTGAACCCAGTGACGTAGAGGTA
GTGTTTTCTTTGATCAGTGCTTTTTTCGTATGTTCTTGACAACTATTTTT
GTATTCTTTTGACTTGTTTTAATGAGAAATACCGTGGTTGTGCCAACGCT
TCAAACATCATCCAACAATCGCCCCCTTTATGTGAAATTCAGGAAACGGA
ACACGGGCTACATGAAAAAAGATGATAAAACCTTTTCATTGAACAAGTGA
ACAATCTAATCTGCTCTATTCTGAAATTGTTCCTTACCAGTACGAGAGAG
ATTGTTTAAATAAATGCCATTTTTTATTAATTCTAATAACAGCGTAATTA
CATAGCTCATCTTTTTTCTCCACAAACGCGGGAATTGACAATTAGATTTT
TTGTCGAGAAAAAAGAAAGCTTAATAACTCAGAGTGTTGTCAGAAAGTTA
TGCTATATGATAAAAGTGATTTGATCAAAAAATCTCAATTTTGATTTTGT
TTTATGCGTCGTTTTAATCTTTCTATTGATTTTTTTTGTAGATTGTTTGT
GAATTGTGATTTTTTTGCCCCTTCTTTGCGTTGGTTTTGAGTTGTATTAA
GGTTTCATTTCGAGCAAATATTTGGATCAATGAGTGTACTATATAGCAAC
ACTCTGCTATCTTTTAAACACAACTTACTGCTTACAGAATCTTCATAGTT
TTTTTACTACTCTTCAGATATGACTTTTTAAATTGGCTTAATGTTGGAAA
GAATTGAACAAAATGTTTTTACCTTATTCGTGCCTTTCGATAGAGATCTA
CGTAATGGAGGCAGTCTTTGCTTAAGTGTAAATGTAAATTGTAGCTATTT
GACATTTGGCTTTTAGAAAGATATTTGCATTTATTAGAAATTTCCTCACT
AAAAGCTCACGAGAGAAATGTTATTTCCAGCGGCAGATTATAAGATTTTA
TATTCGTTTTGAATAAACTCTGTATCAAAGTTTGGTGTGAATGAAACCTT
TGCATCTGCTTCAAACTTAGCTCGCCATGCTTTCTTTCAATTTAAGAGAC
CCCAGAGCGCTTTGCCTTATATACTTTTTACATTTATTCCTGATATATTA
AAATGTGCTTGCTTTTTTAGATCTTAAACTTTTGATCAGTTTGAACTGTA
AACTTTAATACTTTTTCATTAAAAACTGCTGGATAAACTGTTTCTTTTTT
GTAATTTTTCTCAAGATGAAGACATGAAAATGATTTTCCAGTGGAATTGA
TTTGAGGAAGTTGGTTCAGGAGAAGAGATGAGTTTTCACAATGCCATCTC
AGGTGAAAAATATTCCTACTTAATGCACTACTTTCGATTGGACATTACTA
AATGACTGATAATACCTTATTCAGGATATGAGATACACGAAGAACACTTT
TTTTAATTTCCTTCAGTGGTATGTCAATATCTTCTAAATGCATTCCATAT
AAACAAGTGGTTTAGATTTTGAACTTTGCTTCTTTTTTCATTTTCAGGAA
CTCCTGGCATCATTTTAATAGTTGTGATTTCGTTCGTTTTGATCCTGCTC
ATTTGTGCTGCTCTTTATCTCCTCAAAAACAAAAAACCAAAGAACGTCCG
ACAGTCGATTTTTGATCACGAAAAACAAATCAAGTACGGTATACTAGACT
ATCCGCAGTCTGGAACTCCAGAATTTCATCCAAACCCGATCCAGCCTCCT
TATCAAACGAAAGTGAAAGTGAAATTAATACCTAATAATGCGAAAACAAA
GACGTCTATAAAATACACAGAACTCGGCGAAGGTGTTGAAGAAGCTCAGG
AGGACCATAAAATTTTGGATGACCTCTCCAGTGGAGAGCACTCACCCAAT
CAAAAAGATTTCCGCAGGTCTGTACATCTTTATAAAGATAAAATCACAAA
CTTTATTTCCAAATATCGTGATGATCATGATTTATCGTCTTTACCACAAA
ATGATACGGAACGCAGGATCTGGCAACCGGAACCAGTTGCGGTCAATCAA
ACACACCGTTTACAAAGACCAGATAGTGTTCTTTCCAATGAACAAGAAAT
GAGTTTAGGACGATTAACTTTTACCATGTATTATCTACCTGGCGATGAAT
ATTTAACTCTACTTTTGATATCTGGTCGACAATTGAACTCATGTGATTCC
TTATATAACATTCGTTTGCCAGCTGTCAGTATCGTCATCGAAAATAATCC
CAACACCGAAGTCACTTCAAACCCGGATGAAGCACCTAATCCGGAATATG
ACCAAGAATTCACTTTCACTATCCGCTCAAAAGAACTCTTCGATGTGGTA
TTACGATTTACTGTTTGGGATATTATATCGAATAACGAAACCAGAGTGCT
TGGCTTTTTTCGTGTACCTTTAGCACAATACCAAAAGACTCTATTAGCTG
GTTCTGATACAGGACCGATTTGTCGTGAAATACAACCCTGTCTCAATCCT
GTAAGTCTAACACGAATTTCTCACTCGAGGTTGAAATAATGAGTTTTCAA
GAGATTAATAGCTCCATATTTCTCGCTATAAAATCATCCCGTTGATGGAT
GGTAGAAGATGAAGGAAAAGATTAGGAGATTCAAACAAACCTCAAAGGTC
GAACCAATCATCGGATTAACACCTTTCTTTTCCTAAACTAGTGTTGATTT
TTTTCTTCCCTCTCGAATGTGTTACGAATCTAACCTGTTCTGTAAAATCT
TAGAAAAGTACTTTTGCAAGCTCTCCCAGGATATAAACATTATATTTTTT
TAATAACTGGTCCTTCTTTCTTTGGTTATTTCAGCCTTCCACGGTACTTG
GTCAATTACTGATTTCTTNTTTCTTTGATTATTTCAGCCTTCTATGGTAC
TTGGTCAATTACTGATTTCTCTACTTTACGATTGCGTGACTGACAAAATC
TTTGTCACTGTGCGACAATTTCATCAATTATCTGTTTCCAAAGATGATCT
AGGTATGTTGTATAATCAAGGATAGTGAGTTTGAATTATTTCCGTTTAGT
CATATGAAATTCTGGTGGAACTTTTAACCCCTTTACTTTAAAAAACTCCT
ACAAGTTAAACTGGTTTGATGTAACATTTTCGTCACTGTTACCATTGTGT
TAAATTCTCGGAAAGAACCATAGATTTTATAAAGCCCGAAGGGCTAGATA
TCGTGCTTTAAGCCATCGCAGGCAAAAAAAATGAATATCGTAGAAAATAT
TGTTGCTCTTGTTTTCGAAAACCCGCGAAGCTTCTAATTGGTCAAGTGCT
TAAATTTTATTGTAATGTTACGTGACCTAGGTAGGATTTCCTACCTAACC
ACGGCACACTTTTCAGCCAAAGCACGACATCTAGCCCTTCGGTCTTTTAT
AAATAAATCTTTGGAAATAACCCCTTAATGTCATTGGTTGACACCTGTGA
CTCACCAGCATGTTAACGCTTTTGGTATTTATTTTCTTCTTCTTTCAGAC
ATGTATTTGAAAGTATCTCTTCTCTTGGATAATGACATAATCGTCAGTAA
ACGTTCCAAAACCTTCACATCAACTCGTGATCTACATCTTACACAAACAT
TCGAATTCAGTGCTCTCTCTGATGAACTCGATAAAATGTCGACGGAGACA
AGTCCTATATTAAAAGTAGCAGATGAGCTCATAACTAATGCTTCTTCTAA
CTATAAAAAATCACTGGTCATCAAAGATGTGCGTTCAGTTCGCGAAACTT
TTGCATCAGATACTTTAAAGAACCATATGGGTGTTTTAATTAGTGTGCGT
GCGACCACGGGTACAACGAGGAATAAGCGAGTGATTGGACGACTTTACCT
TGGTAAAACGAACTTTCCTTTTAATGATGAGGAATTTCACTGGGTTGAAA
TGGTGCGTAATTTTGATAGTTCAATCACACAATGGCATCATTTACGTCTC
GATAGGTTATGATAATGTCTCTGTAAAATCCGTCTTGAAATAGTGTACAG
TGGAAAATACAAATTTTGTTAGAATTCTCCAACTCCTTTTTGATATTCTT
TTACACGTCCAAAATTTTTGAAGCCTTCAGATGTTCTTAACTTTTTGAGT
TTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034912XLOC_034912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055490-exon-scaffold_253-1575043694:366499..366692TCONS_00055490-exon-scaffold_253-1575043694:366499..366692Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1575043694:366164..366240TCONS_00055490-exon-scaffold_253-1575043694:366164..366240Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1575043694:364341..364427TCONS_00055490-exon-scaffold_253-1575043694:364341..364427Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1575043694:363193..364145TCONS_00055490-exon-scaffold_253-1575043694:363193..364145Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1575043694:362691..362805TCONS_00055490-exon-scaffold_253-1575043694:362691..362805Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1575043694:361587..362194TCONS_00055490-exon-scaffold_253-1575043694:361587..362194Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:366499..366692TCONS_00055490-exon-scaffold_253-1510915933:366499..366692Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:366164..366240TCONS_00055490-exon-scaffold_253-1510915933:366164..366240Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:364341..364427TCONS_00055490-exon-scaffold_253-1510915933:364341..364427Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:363193..364145TCONS_00055490-exon-scaffold_253-1510915933:363193..364145Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:362691..362805TCONS_00055490-exon-scaffold_253-1510915933:362691..362805Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1510915933:361587..362194TCONS_00055490-exon-scaffold_253-1510915933:361587..362194Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:366499..366692TCONS_00055490-exon-scaffold_253-1491911889:366499..366692Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:366164..366240TCONS_00055490-exon-scaffold_253-1491911889:366164..366240Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:364341..364427TCONS_00055490-exon-scaffold_253-1491911889:364341..364427Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:363193..364145TCONS_00055490-exon-scaffold_253-1491911889:363193..364145Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:362691..362805TCONS_00055490-exon-scaffold_253-1491911889:362691..362805Clytia hemisphaericaexon
TCONS_00055490-exon-scaffold_253-1491911889:361587..362194TCONS_00055490-exon-scaffold_253-1491911889:361587..362194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:361587..366692 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26404	1.25048	0.234911	0	5.58503	5.48205	13.0463	13.2226	9.40154	6.65817	9.13932	7.61291	13.4198	15.3341	3.65194	3.42313	7.73335	10.0931	22.2755	17.4263	8.71668	9.52349	6.82785	6.27185	7.68981	7.65458	8.25008	7.64404	1.52813	1.87989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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