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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055475 ID=TCONS_00055475|Name=TCONS_00055475|organism=Clytia hemisphaerica|type=transcript|length=1568bp
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG
ACTTCATGACTTTATGACTtttaaaaatcactaaaatctcTGCATAAAAC
TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGacACCATCATGAG
TTTTGATAATGACTTCAACAAATATGACTCAATCAATGTAACACTTTCAG
ATGTCTTGGATGTGAATCTTGGAGTAcaattgaaagaaaaacaacaaata
ttATCTACCagagagaaaaattttgataaggTTTTTGCACCTAGTACACC
TGGCCTTGAGATTCGAGTTCCTTGTACAACACCAATTTCTGATGATGATT
CTTCGGACTCTTATGAAAGTGATGATGAAGGTTTAATACCAGTTCTTCCG
TTTGTGATGGTAAATAAAAGTCAGAAACATTTATCTCAAAATAACAAGat
gattttaaagaaaatacatGAAAAAAACTTGTCCGTTTCTTCAAAAGCTA
TCAATGACAGAGAACGTTTAACAGAAAAGCAaacggcaaaaattgccaaa
tgtTCTACTATTGTTAAATGTAAATGTGAGTGTCACATTACAAAACCATC
GAATGTGAATAAGAAGACCAACGAGTCAtctaaatcaaaagaaattcgtC
CTTCATCAGCTTTATCAACAAAGGAATTCACTTTTTCATTGCCCAATGAG
CGACTGAATGTAAGGAAACAAAATAAGCCTCCTATGATGAGAAGAtcgtt
ttcaagtcagaatttACGACCAACTAGTCACTATACGAAATATTCTTCAA
ATCGACCTTATTCTGCACTACCACGTAcatcagaaaaaccaaaacagTTA
CTgattccaaaaatattgaaCATTCAACCATCAGTTATGTTGAAAGGACA
TTCACTCCCAGTTGGAAAACACACAGTCAAAACATTGAACTACATGCATC
ATCTTCATCAGAGAGAGCgaacattatcaaaaaagatAAATCATCAACAC
agtgaaattgaaatttgtaAAACTAATAATAGTTTTGAGAGTTTAAGTAT
ATCACCATCAACTAGAGCAAGTACTCTTAATACCAATAACGTAAAAGATA
ATTGTGACTTGAATACAAACCAAGGTCATAGACTTTCTAAACATCAACTT
GGAGAAGACATTCAGAATGTTGCTACAGTGAATGATTTCAATACTAATAA
GGAACCACAAGAGGAAGTTGTCGACCATTATTATGTGGAAAAGGacgaaa
aacatttcaaacaattaccaaTACAAAGATCTATCAAAAGTGCCAAGAAA
CAAGTTCAGTTTAATACAAAACCACCAAGCTGAATTATGTTCAAAAATGA
TTAACCTCACTAATCATTGCTAACAGTTAATGGGTTTTGATGGACTATCG
AGAATCAATAACAACTAACAAAATGTCCAAAGATTTAAATCAAGACTTAC
GTGTTCTACATGTTCATCCAATAATTCATGTCTCGAAGAATTGGCTTAAT
CAACAAAAAAGATATTACTCTTAACCTTGAAGATGGTTCATTCAAGCCTT
ACCTGAAACCAGACAACA Run BLAST on NCBI protein sequence of TCONS_00055475-protein >TCONS_00055475-protein ID=TCONS_00055475-protein|Name=TCONS_00055475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MSFDNDFNKYDSINVTLSDVLDVNLGVQLKEKQQILSTREKNFDKVFAPS
TPGLEIRVPCTTPISDDDSSDSYESDDEGLIPVLPFVMVNKSQKHLSQNN
KMILKKIHEKNLSVSSKAINDRERLTEKQTAKIAKCSTIVKCKCECHITK
PSNVNKKTNESSKSKEIRPSSALSTKEFTFSLPNERLNVRKQNKPPMMRR
SFSSQNLRPTSHYTKYSSNRPYSALPRTSEKPKQLLIPKILNIQPSVMLK
GHSLPVGKHTVKTLNYMHHLHQRERTLSKKINHQHSEIEICKTNNSFESL
SISPSTRASTLNTNNVKDNCDLNTNQGHRLSKHQLGEDIQNVATVNDFNT
NKEPQEEVVDHYYVEKDEKHFKQLPIQRSIKSAKKQVQFNTKPPS Run BLAST on NCBI transcript from alignment at scaffold_253:158426..163233- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055475 ID=TCONS_00055475|Name=TCONS_00055475|organism=Clytia hemisphaerica|type=transcript|length=4808bp|location=Sequence derived from alignment at scaffold_253:158426..163233- (Clytia hemisphaerica)
GCTCTTTAAAAAGAATAGTTGGGTGATCAAAATGATGTAAACAAATCTGG
ACTTCATGACTTTATGACTTTTAAAAATCACTAAAATCTCTGCATAAAAC
TGTCATCTGGACAAGCAACTTAAGTGAAACAAATGAGGTAAGAACATAGA
TGTGTTATATTTAAAGAGCTCGATTTCTTTCTCTTATCTTTCTTTATATT
CTGAGGACTTTATCTCTTAAAAATATCTCTTTATTTCTTATCTTTATCTC
CTCTCTTTGATTTGTCAACTATTTTATTGATTTTGGATGAGGTTTTCAGT
ACAGTGACAACTTTTCTTTGTTGTACTCCTGGCATATTGATTGTAATTCT
ATATGACAATAACATTTAGCCTCTTTTCATTTTGGATTTCGCCTTGATAC
ACTCTGCACTGGTTCTAATTCTATTTCTATTTGTGACACTCTCAACCCAA
CCCTCCATTTTATCGTTAATCTTTTAACACAATTCTATTTGGTGCATTGA
TTGGTTACATTTTGAGTCTCATCATCGATCAAGGTTTTGGCAGGTGATGT
CATTTTTTGTTGAAGTTTGGTGGTTTTTCTCATTTTTTTGTAGATTTGTT
AAAATTTCTCCATTTTTTTAAAATCCGAAGTTTTATGACAACCGTTCTGC
TCTGACGTCAAGTAAAAATATCTTCAGCATGTCCCATATACTTTTAATGG
TACTGTAAGTTGGTCTAGTGTCAGCAACATTCCTCTTCTAATTTCAAAAT
CCTTCTTTAGAAATAGGAATAATAGGAAGGTCAGAATCACTGTTGGAATC
CCTCAACTGATTGCTATACCGACACTAAAGAAAATTAGTTTCAGCGATTC
CAACCTTCCTATTATTCCTATCTCTAAAGTTAAAGAAGATTGTCAAAATT
AGATGAGGGATGTCAACATTAGACTAACTTAAGGTATGTATTTCCACATG
GCAAATGCATCTTATTTTTCGAAAACCTCAAAACTGTACAAGTGACTCCT
CAAAAGTGGATGCCCAGGAAAAGTTTTCACATTATTTAATTTTATAGATT
TGAATCTTTGAGAACAAGGTGGATGTGCTTAAACCTAGCGTAGAAATTCA
GGCGTTAGAATGGTGATGCTCCTCTCTTCTTGAAAGCTTTGACTTACAGT
ACATCAATATCTTAATATCTGCTCCTTACGCCAATACACCAAAAGAAGTA
ATTACTCTTTCACTCTGAATATCTTTGGCGTACTGTACACCATTTCTAGA
CTGGCTTAATACTTAGGAGCTTAGTATCTCAGGATAAAAAAAGCCTCAAA
TTGTTCCAATAAGGCCTAGAACCCACTGAGCCCTACCAAAATTAAATAAT
ATAATGGCGATACTTTTGAGCAGGCTGGATACTTCTTTGCTGAGAATTAG
CACATTTGCTACTTTGATTTTTGGGGCGGGCTTGGAAAGTTCCCCTGAGG
AGGGGTTTTTTTGCTAGATATTTGAATTTTTGTAGAAATTTTGTGCATTT
TTTCCTTCTGTAAATTTGTGCAGGACCTATTGTTTTGTTTTTAGGCTTTG
GGATGAATTTCCCCCTATTTCTGGAATTTGGGGGGGGGCCTCAGGGTGCC
TGCATAGTTGTGATACATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCTA
AATTTAGGTCCCCCCTAAGAACAAGGTCCCCCCCAGCCTGATAAAATTTT
AGGTCCCAGTATAATAGGGGAAAAATTTTTGATATATAATTTTTTTTCAA
TGTGAGTTTTTACCATTTAGTCNTGAAGACATAAAGGTTTTTTAGAGAAA
TTAAAAACAGTAAAGAAAAAAATTTAGGAAGTGTTATTTAGCCCCCACAG
TTACATAAAATTATGCAGGTCCCCCCCCCAAGATAGAGCTCCCCCCGCCT
GTCAGGCAAAAACAAACAGCTCCCACGTATATGGCAAATTTGAGGTGTAG
CTCCCCCAGCTCAGGCGGGGGGGGGGTGCGAGCCATGTGATATTTACCAG
TACCTTTGATCTGGAGTATATAAATTAGTGCAAGATCAAGAGGTTTCACA
TTTGACTCTAATTGTCTGTCCGTCTGATGTATCAATCAAGAATGTATTTT
GTCTAGTTAGAAGACACCTGGAAATATTCTTTCTGAGCTGTAAATTGAAA
TCATTCTATTCTATTTTTTTTTCGAAGACACCATCATGAGTTTTGATAAT
GACTTCAACAAATATGACTCAATCAATGTAACACTTTCAGATGTCTTGGA
TGTGAATCTTGGAGTACAATTGAAAGAAAAACAACAAATATTATCTACCA
GAGAGAAAAATTTTGATAAGGTTTTTGCACCTAGTACACCTGGCCTTGAG
ATTCGAGTTCCTTGTACAACACCAATTTCTGATGATGATTCTTCGGACTC
TTATGAAAGTGATGATGAAGGTTTAATACCAGTTCTTCCGTTTGTGATGG
TAAATAAAAGTCAGAAACATTTATCTCAAAATAACAAGATGATTTTAAAG
AAAATACATGAAAAAAACTTGTCCGTTTCTTCAAAAGCTATCAATGACAG
AGAACGTTTAACAGAAAAGCAAACGGCAAAAATTGCCAAATGTTCTACTA
TTGTTAAATGTAAATGTGAGTGTCACATTACAAAACCATCGAATGTGAAT
AAGAAGACCAACGAGTCATCTAAATCAAAAGAAATTCGTCCTTCATCAGC
TTTATCAACAAAGGAATTCACTTTTTCATTGCCCAATGAGCGACTGAATG
TAAGGAAACAAAATAAGCCTCCTATGATGAGAAGATCGTTTTCAAGTCAG
AATTTACGACCAACTAGTCACTATACGAAATATTCTTCAAATCGACCTTA
TTCTGCACTACCACGTACATCAGAAAAACCAAAACAGTTACTGATTCCAA
AAATATTGAACATTCAACCATCAGTTATGTTGAAAGGACATTCACTCCCA
GTTGGAAAACACACAGTCAAAACATTGAACTACATGCATCATCTTCATCA
GAGAGAGCGAACATTATCAAAAAAGATAAATCATCAACACAGTGAAATTG
AAATTTGTAAAACTAATAATAGTTTTGAGAGTTTAAGTATATCACCATCA
ACTAGAGCAAGTACTCTTAATACCAATAACGTAAAAGATAATTGTGACTT
GAATACAAACCAAGGTCATAGACTTTCTAAACATCAACTTGGAGAAGACA
TTCAGAATGTTGCTACAGTGAATGATTTCAATACTAATAAGGAACCACAA
GAGGAAGTTGTCGACCATTATTATGTGGAAAAGGACGAAAAACATTTCAA
ACAATTACCAATACAAAGATCTATCAAAAGTGCCAAGAAACAAGTTCAGT
TTAATACAAAACCACCAAGCTGAATTATGTTCAAAAATGATTAACCTCAC
TAATCATTGCTAACAGTTAATGGGTTTTGATGGACTATCGAGAATCAATA
ACAACTAACAAAATGTCCAAAGATTTAAATCAAGACTTAGTAAGTTTTAT
TTTGTCAATACTTACTATATACTAACTTTGAGCTCACATTGAGTCTTAAT
AAAAGTATAATTTGTTCATGGTATTTTAGCAGATTTTAACACGGGAAAAA
CAAGTGTGCAGTTTTCTTTCTATTTTTAGAAGAATGTTTAAAGTTCATCA
TAACTAAAACAACCAGAAGACTTGACCCGGTTAAAAACTTAAGTCAGTGG
AGATTGAATTAGGGAACCATATTATTTTGTTTTTAATAAGCGATTTCAAT
CAGTATAATTGTTTAAAACTTCAGCTCCGAGTTTTTGACCAATCAGTGAA
TTCCAGTCCAGTCCAGCTTTCACTTTTATAAGGAAGATAGTATTTTTAGT
GGTGATGGAGATTTTGCATAGGTCTTACCGGGTTTGACAGTTAAATGAAA
TTTAATAATTTATTGTTACTTTTTTTCAGCGTGTTCTACATGTTCATCCA
ATAATTCATGTCTCGAAGAATTGGCTTAATCAACAAAAAAGGTATATGAT
TCATCTTTTTGACTAAACCTTATTGTCGTCAAAGCAAATAGTTTCTATCA
AACATAGAGAATAATAGATTTAACATGTTCGTATTTGGAAAGCATAGAGA
TTTTATTTCTTCCCTCGAAAACCCATATTGGTGAGGTTAAGTAAATCGGT
AAAATCACGACGACGAACGAAAATTTAACAGGCTAGTGAGTTTCAACCAA
TCAAATTTCGTATTTTCACTAGCCTTTTACATTTTTGGTCCGTCGTCGTG
ATTATCCTTGTATGCTTAACTTCAGTATTGATTAAGATATGCACCACTGG
AGAGTCTTCCAAGAATTTTCAAAAATTCCACCCAATACGTCACTTTTTCT
ATTGTTTCTATTGTATTGGGTGAAAAATTTGAAAAGTTTTCAGAAGACTC
TCCAGTGGTGCATATCATAAATACCGTCAACTAAGGGGTCTCCACTTTAA
AAAGTCCTTCTCAACTGTCAACTATCAAAATAACATCACTCAACAAAAAT
TTTGAGCATAAACTTTCGTTCTCTTAAAAAAATGACCAGTGCTATGTGAT
ACATAAGTAAGAAGTAACTGAAAAATGTAATTATTTTATTTCCTTGAAGC
GAAGGTTCCAAATTCCTTTATCTTTGTTCATATCAATCACTATAGAGGCT
CACTAAAATAGCTTTTATTATACTTTTCCAGTTTTGACTTTTAACGGTAT
ATATACAAAATGTTATTGAGTGCTGCAATAAGACAATCGTCAATTATTTA
GATATTACTCTTAACCTTGAAGATGGTTCATTCAAGCCTTACCTGAAACC
AGACAACA Coding sequence (CDS) from alignment at scaffold_253:158426..163233- >TCONS_00055475 ID=TCONS_00055475|Name=TCONS_00055475|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_253:158426..163233- (Clytia hemisphaerica)
ATGAGTTTTGATAATGACTTCAACAAATATGACTCAATCAATGTAACACT
TTCAGATGTCTTGGATGTGAATCTTGGAGTACAATTGAAAGAAAAACAAC
AAATATTATCTACCAGAGAGAAAAATTTTGATAAGGTTTTTGCACCTAGT
ACACCTGGCCTTGAGATTCGAGTTCCTTGTACAACACCAATTTCTGATGA
TGATTCTTCGGACTCTTATGAAAGTGATGATGAAGGTTTAATACCAGTTC
TTCCGTTTGTGATGGTAAATAAAAGTCAGAAACATTTATCTCAAAATAAC
AAGATGATTTTAAAGAAAATACATGAAAAAAACTTGTCCGTTTCTTCAAA
AGCTATCAATGACAGAGAACGTTTAACAGAAAAGCAAACGGCAAAAATTG
CCAAATGTTCTACTATTGTTAAATGTAAATGTGAGTGTCACATTACAAAA
CCATCGAATGTGAATAAGAAGACCAACGAGTCATCTAAATCAAAAGAAAT
TCGTCCTTCATCAGCTTTATCAACAAAGGAATTCACTTTTTCATTGCCCA
ATGAGCGACTGAATGTAAGGAAACAAAATAAGCCTCCTATGATGAGAAGA
TCGTTTTCAAGTCAGAATTTACGACCAACTAGTCACTATACGAAATATTC
TTCAAATCGACCTTATTCTGCACTACCACGTACATCAGAAAAACCAAAAC
AGTTACTGATTCCAAAAATATTGAACATTCAACCATCAGTTATGTTGAAA
GGACATTCACTCCCAGTTGGAAAACACACAGTCAAAACATTGAACTACAT
GCATCATCTTCATCAGAGAGAGCGAACATTATCAAAAAAGATAAATCATC
AACACAGTGAAATTGAAATTTGTAAAACTAATAATAGTTTTGAGAGTTTA
AGTATATCACCATCAACTAGAGCAAGTACTCTTAATACCAATAACGTAAA
AGATAATTGTGACTTGAATACAAACCAAGGTCATAGACTTTCTAAACATC
AACTTGGAGAAGACATTCAGAATGTTGCTACAGTGAATGATTTCAATACT
AATAAGGAACCACAAGAGGAAGTTGTCGACCATTATTATGTGGAAAAGGA
CGAAAAACATTTCAAACAATTACCAATACAAAGATCTATCAAAAGTGCCA
AGAAACAAGTTCAGTTTAATACAAAACCACCAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00055475-exon-scaffold_253-1575043694:163097..163233 | TCONS_00055475-exon-scaffold_253-1575043694:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1575043694:159745..161056 | TCONS_00055475-exon-scaffold_253-1575043694:159745..161056 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1575043694:159243..159304 | TCONS_00055475-exon-scaffold_253-1575043694:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1575043694:158426..158482 | TCONS_00055475-exon-scaffold_253-1575043694:158426..158482 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1510915933:163097..163233 | TCONS_00055475-exon-scaffold_253-1510915933:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1510915933:159745..161056 | TCONS_00055475-exon-scaffold_253-1510915933:159745..161056 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1510915933:159243..159304 | TCONS_00055475-exon-scaffold_253-1510915933:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1510915933:158426..158482 | TCONS_00055475-exon-scaffold_253-1510915933:158426..158482 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1491911889:163097..163233 | TCONS_00055475-exon-scaffold_253-1491911889:163097..163233 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1491911889:159745..161056 | TCONS_00055475-exon-scaffold_253-1491911889:159745..161056 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1491911889:159243..159304 | TCONS_00055475-exon-scaffold_253-1491911889:159243..159304 | Clytia hemisphaerica | exon |
| TCONS_00055475-exon-scaffold_253-1491911889:158426..158482 | TCONS_00055475-exon-scaffold_253-1491911889:158426..158482 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:158426..163233 - |
Blast
The following BLAST results are available for this feature:
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