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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055470 ID=TCONS_00055470|Name=TCONS_00055470|organism=Clytia hemisphaerica|type=transcript|length=2108bp
tttgtATTGAAAGCGGAGAAAGAAGAGCTTGCAAACACAGTCAGTCACTC
ATTAATACGAAACAATAGATCTGTCAATTAAGTGGGTGATTTATTGTTTT
AATGATGCTTTATGTTGTAATTACCTAACACGAGAGTGACGAATTTGTTG
ATATAACTATCTGTCAACTACTGGCCAGTCAGTTTATTACTTGATAACAT
CTCGCAGAAGAAAGGCGCCTGCTGCTTATCTCGTTCGCACCACTCCAGCA
CTCAATTTCACGCGAATTACTCATTGAATATTTATCTTTTGGCTGAGAAT
ATTTCAACTGGAAGTTTGTTTAGTATATGGTTGTCGTTTTGGTTTGAGGC
ACATTTAACGTTTAAAAGTTAAAATGAGAAAAGAATCGAGTTTTCTGTAC
GACTCGGATTCGAGTGATCATTACTTTGagGACGACACACCATGTTGCAG
TCTCGTCATTTTACCAGGCAATCGGTCAGAGGAAGATTATCTCCGTAGTA
TTTACAGCCGGATTACCACGCCTTCGCCTGTATGGAAAGAATCAATATCC
ATCGAAACATTCAAAAGCAATGGTCGGCAAACTGCCAAACATGCCCACTT
AATACCACGTTGCTGTCGCGAGGAGGAGGTCACAACATCCAATAAAACTC
CTACACAAAGTTTAAGCGTCAATTTCATTCTTCGCGAGGAACTTATTGGA
AATGAAGTTCATAAAATCCGTcgtttatttttcaataatcCGTGGAAATT
TCATCACACGTTTCAGACGTACGACGTCGAGAGAAAGAAAGTCGTCGCCA
AGCAACCTTATTACGAACTGACGGAAGAATATCCACTCATGTCGCCGTCA
GTCTGCCATCAAGGTTCTTCAGTTTTACGGTATAACATCTTTGTGAAAGA
AAACTTTGACGAAATGAAATATTTCTATATGGATTTACTTCGCTCACAAC
CGATGTACGAAGAAGAGAATTTTTGCTATTTCACCATCTTCTCAAAAAAT
GGAACTGAAATTCAACTGTCATTAAAACATTCCAAACAATTACATATTGT
ATCCACCAAAAGAACATTCTTAAAAGTCCACTTAGACAACCTTTATGAAA
CTGTACACCAAATGGGTGCcaaaattgaagaaatctttTGCAGCGATTGT
GGGATTCTCGTAACGCGTGACCCTGAAGGAAATCCGATTCTGATCACAGG
TAAGAATCCGTCTAAAAACAATCCACACAGTCGACAGTCTTCAGGTAATT
CAACGTTATTACGTAGACAACAACAAGAGAAAACGCAAAAACAACAACGT
AGATCTTTGGACGAGGATGTTTGGAGTGATTGCTCAGATTGCTCAGAATg
cttacgtcagcaaaaatacaacaacaataacaacatTAATAACTATCGTC
AACCGAGTAAAAACACTAACAAACGAGCCAGTCGTTATTTTTATCAACCC
GATCAAAACGATTCGGGTTATCATAACGACGAACTATCCTCAACTGACGA
AGAAGACTGTTTATCTTTTTCGCCCCATTCTCCTAAAAACGGTGGCACCT
ACTCAGCCCATTCTCCTAAAAATGACAGGACACTGACATCTCAACAACGC
AGAGATCATAGTAATTGCCCAAGAGGTATCACTCAATTGCACTTTCCTAC
TTGCCCGAATACAGGATGTTGTGATCGATACGGCAGACCCTTCACCTGTT
GCGTCGTTAATGTTTAATCGGTCTTGCAACAGACTATAGAAAAGACAACT
AGACATAAGTCtaagaaatgtttatttttgatattactttttgacgattt
ttttttaCGAGCAGAAATCTTTTGTTCTATGAAAGTATGttcagaaaatg
aaaatctatCCTATGCATTTCGATGCTTTCAAGTAATTAATCTGACTTTT
GTTTTAATTAATCGAactgtttttgacattttcctatACTAATTTCCTTT
TTGTAATTGTTTACCTGCGATTTGTTCGCTCGTTGCCAAGTAAAGAAACT
ACCTGATTCTTGACGAGATCTAGTTAATCTTGATCGTATAACAAAGTGGA
ATAAGATTCGAATGTATATACAATAGAATTTATTAATAAAGCTTATCGTA
TGATTAGA Run BLAST on NCBI transcript from alignment at scaffold_253:93661..97056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055470 ID=TCONS_00055470|Name=TCONS_00055470|organism=Clytia hemisphaerica|type=transcript|length=3396bp|location=Sequence derived from alignment at scaffold_253:93661..97056- (Clytia hemisphaerica)
TTTGTATTGAAAGCGGAGAAAGAAGAGCTTGCAAACACAGTCAGTCACTC
ATTAATACGAAACAATAGATCTGTCAATTAAGTGGGTGATTTATTGTTTT
AATGATGCTTTATGTTGTAATTACCTAACACGAGAGTGACGAATTTGTTG
ATATAACTATCTGTCAACTACTGGCCAGTCAGTTTATTACTTGATAACAT
CTCGCAGAAGAAAGGCGCCTGCTGCTTATCTCGTTCGCACCACTCCAGCA
CTCAATTTCACGCGAATTACTCATTGAATATTTATCTTTTGGCTGAGAAT
ATTTCAACTGGAAGTTTGTTTAGTATATGGTTGTCGTTTTGGTTTGAGGC
ACATTTAACGTTTAAAAGTTAAAATGAGAAAAGAATCGAGTTTTCTGTAC
GACTCGGATTCGAGTGATCATTACTTTGAGGTAATTTTATTTTTCAAAAT
CTTGCAATTTGTGTTTTTCCATTATATGTGTATGTTTTTCTGTAAAAACA
AGGTACTGAACGGTTATTCGCCCTTCCCTTTCGTCATTTTTTGAAAGTCA
TAAGCAAACGCTATTCCGTAGATTAATCTTGAAGTATTTGGGGATTGGAC
TAAAAATTGTAGTCAATAACATGTCGATGTAAATAAGTATTTATTTCACT
GATCAGCGTTTATAATACTACTGAAGCAGTTGGACCTGAGGCTGAGGAAA
TTCTTCAAGTCACGACAAGTTTTATTTGAAAGTTTCTAATTACTTAACAC
GAGTATCACTTAGCATCGAATCTATTTATATCTTTTGTCGTGTTGAAAAT
CAATGTTAAACACATTAGCACGCATGCGACCAAAATAGAAATCAAGAAAT
CTTAAGAGAAATCCTTACTGTACCTGCAGAAAGCACACACTTATCATTGT
TTTCCGCCTGAGAAACACGTGCTGACGTAGAAAGGAAACTGGTCTATATC
TTCAAAACGTGTTGACATGGCCATGTTGTTTTTCCACCATCTGTATTAAG
CTACACGTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCCTCG
AGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAGGCTTTGGAGAC
TTAGAAACATGTATTTTCTTAAGAAATTACATCAAAATGCTCAAAAAATG
CTGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAA
CTAAGAACATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAA
ACGTGTATAGTGTTTTTGTCGGTTGAGAGGGAAGAAGGCTCTTATCGTTT
TCTGTTCTACGTCACATGTATGTGTCTGATGTCATACATAGGAGATCAAC
CTGCAGTAATAAGTCATTCCATTTGTTTGTCACTGTTTTGATTGTGTTTT
TGTTTTTTTTGGGTCGAGCGGAAAATAATTAACGGTCTGATGTCAGTGCA
GTTATTGATTAGAGACTAATTACTCTCGTTCTAACAAACAGAAACACCAG
TTTTGAAATTCAGATTTTGTGTTTAACGAAACCCATAGTTGACGCTCTTT
AATTCGATTTTCAAAGGGAATTAGCTTTTCATCGATTAAGGGAGCGTGTC
AAGTAGAAGAGCATCAGCCTATATACAAAGTTTTATTTACCCTGTCTATT
AAAGCCTTCATAATGATTCTCGATCTAAGCAAATCTAATGACAACTTCTT
ATTTTCTTTACTCTATAGGACGACACACCATGTTGCAGTCTCGTCATTTT
ACCAGGCAATCGGTCAGAGGAAGATTATCTCCGTAGTATTTACAGCCGGA
TTACCACGCCTTCGCCTGTATGGAAAGAATCAATATCCATCGAAACATTC
AAAAGCAATGGTCGGCAAACTGCCAAACATGCCCACTTAATACCACGTTG
CTGTCGCGAGGAGGAGGTCACAACATCCAATAAAACTCCTACACAAAGTT
TAAGCGTCAATTTCATTCTTCGCGAGGAACTTATTGGAAATGAAGTTCAT
AAAATCCGTCGTTTATTTTTCAATAATCCGTGGAAATTTCATCACACGTT
TCAGACGTACGACGTCGAGAGAAAGAAAGTCGTCGCCAAGCAACCTTATT
ACGAACTGACGGAAGAATATCCACTCATGTCGCCGTCAGTCTGCCATCAA
GGTTCTTCAGTTTTACGGTATAACATCTTTGTGAAAGAAAACTTTGACGA
AATGAAATATTTCTATATGGATTTACTTCGCTCACAACCGATGTACGAAG
AAGAGAATTTTTGCTATTTCACCATCTTCTCAAAAAATGGAACTGAAATT
CAACTGTCATTAAAACATTCCAAACAATTACATATTGTATCCACCAAAAG
AACATTCTTAAAAGTCCACTTAGACAACCTTTATGAAACTGTACACCAAA
TGGGTGCCAAAATTGAAGAAATCTTTTGCAGCGATTGTGGGATTCTCGTA
ACGCGTGACCCTGAAGGAAATCCGATTCTGATCACAGGTAAGAATCCGTC
TAAAAACAATCCACACAGTCGACAGTCTTCAGGTAATTCAACGTTATTAC
GTAGACAACAACAAGAGAAAACGCAAAAACAACAACGTAGATCTTTGGAC
GAGGATGTTTGGAGTGATTGCTCAGATTGCTCAGAATGCTTACGTCAGCA
AAAATACAACAACAATAACAACATTAATAACTATCGTCAACCGAGTAAAA
ACACTAACAAACGAGCCAGTCGTTATTTTTATCAACCCGATCAAAACGAT
TCGGGTTATCATAACGACGAACTATCCTCAACTGACGAAGAAGACTGTTT
ATCTTTTTCGCCCCATTCTCCTAAAAACGGTGGCACCTACTCAGCCCATT
CTCCTAAAAATGACAGGACACTGACATCTCAACAACGCAGAGATCATAGT
AATTGCCCAAGAGGTATCACTCAATTGCACTTTCCTACTTGCCCGAATAC
AGGATGTTGTGATCGATACGGCAGACCCTTCACCTGTTGCGTCGTTAATG
TTTAATCGGTCTTGCAACAGACTATAGAAAAGACAACTAGACATAAGTCT
AAGAAATGTTTATTTTTGATATTACTTTTTGACGATTTTTTTTTACGAGC
AGAAATCTTTTGTTCTATGAAAGTATGTTCAGAAAATGAAAATCTATCCT
ATGCATTTCGATGCTTTCAAGTAATTAATCTGACTTTTGTTTTAATTAAT
CGAACTGTTTTTGACATTTTCCTATACTAATTTCCTTTTTGTAATTGTTT
ACCTGCGATTTGTTCGCTCGTTGCCAAGTAAAGAAACTACCTGATTCTTG
ACGAGATCTAGTTAATCTTGATCGTATAACAAAGTGGAATAAGATTCGAA
TGTATATACAATAGAATTTATTAATAAAGCTTATCGTATGATTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055470-exon-scaffold_253-1575043694:96627..97056 | TCONS_00055470-exon-scaffold_253-1575043694:96627..97056 | Clytia hemisphaerica | exon |
| TCONS_00055470-exon-scaffold_253-1575043694:93661..95338 | TCONS_00055470-exon-scaffold_253-1575043694:93661..95338 | Clytia hemisphaerica | exon |
| TCONS_00055470-exon-scaffold_253-1510915933:96627..97056 | TCONS_00055470-exon-scaffold_253-1510915933:96627..97056 | Clytia hemisphaerica | exon |
| TCONS_00055470-exon-scaffold_253-1510915933:93661..95338 | TCONS_00055470-exon-scaffold_253-1510915933:93661..95338 | Clytia hemisphaerica | exon |
| TCONS_00055470-exon-scaffold_253-1491911889:96627..97056 | TCONS_00055470-exon-scaffold_253-1491911889:96627..97056 | Clytia hemisphaerica | exon |
| TCONS_00055470-exon-scaffold_253-1491911889:93661..95338 | TCONS_00055470-exon-scaffold_253-1491911889:93661..95338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:93661..97056 - |
Blast
The following BLAST results are available for this feature:
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