|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055464 ID=TCONS_00055464|Name=TCONS_00055464|organism=Clytia hemisphaerica|type=transcript|length=4737bpRun BLAST on NCBI protein sequence of TCONS_00055464-protein >TCONS_00055464-protein ID=TCONS_00055464-protein|Name=TCONS_00055464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1404bp MAESPAAEVLKKLPTLKVVDLRQELEKRGLEKSGLKADLVKRLEKSLLEDRun BLAST on NCBI transcript from alignment at scaffold_253:1294599..1315755+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055464 ID=TCONS_00055464|Name=TCONS_00055464|organism=Clytia hemisphaerica|type=transcript|length=21157bp|location=Sequence derived from alignment at scaffold_253:1294599..1315755+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1294599..1315755+ >TCONS_00055464 ID=TCONS_00055464|Name=TCONS_00055464|organism=Clytia hemisphaerica|type=CDS|length=37935bp|location=Sequence derived from alignment at scaffold_253:1294599..1315755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055464 vs. Swiss-Prot (Human)
Match: SAFB1 (Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4) HSP 1 Score: 112.849 bits (281), Expect = 7.301e-25 Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2
Query: 1547 SRCLWISGLSSITKAVDLKELFSAHGKVIGAKVVTSAKTPGSQCFGFVTMTTPAEALVCIEKVHKTVLHEKTIEVE 1774
R W+SGLSS T+A DLK LFS +GKV+GAKVVT+A++PG++C+GFVTM+T EA CI +HKT LH K I VE
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 480 The following BLAST results are available for this feature:
BLAST of TCONS_00055464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.