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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055451 ID=TCONS_00055451|Name=TCONS_00055451|organism=Clytia hemisphaerica|type=transcript|length=2793bpRun BLAST on NCBI protein sequence of TCONS_00055451-protein >TCONS_00055451-protein ID=TCONS_00055451-protein|Name=TCONS_00055451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp MEVVVGTYNHVIFGFSFKLENKKDKKVWQFGPLFTDQGHAGCIKSVSSNGRun BLAST on NCBI transcript from alignment at scaffold_253:1186546..1210963+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055451 ID=TCONS_00055451|Name=TCONS_00055451|organism=Clytia hemisphaerica|type=transcript|length=24418bp|location=Sequence derived from alignment at scaffold_253:1186546..1210963+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1186546..1210963+ >TCONS_00055451 ID=TCONS_00055451|Name=TCONS_00055451|organism=Clytia hemisphaerica|type=CDS|length=20538bp|location=Sequence derived from alignment at scaffold_253:1186546..1210963+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055451 vs. Swiss-Prot (Human)
Match: PK1IP (p21-activated protein kinase-interacting protein 1 OS=Homo sapiens GN=PAK1IP1 PE=1 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 6.110e-73 Identity = 126/339 (37.17%), Postives = 201/339 (59.29%), Query Frame = 2
Query: 224 MEVVVGTYNHVIFGFSFKLENKK--DKKVWQFGPLFTDQGHAGCIKSVSSNGRYLATGSTDETIRLFDLKKHVEVGTLMEQTGSITSLEFCGTTHLLSGSEDGTICVWKSRSWELLKKLKGHRDKINSLSLHPSGRLALSVSKDKYIRTWNLITGRPAYTTNLKEVAELVRWSPKGDCYAITVGSKVTFHQITGADDPVVYKYDKYILALEFLTENVVCIAGDSEDIIFYDYKKKIVLQRLEAHKLRTKAICLTDNPYLPNDKWMLFTTSSDGNLKAWTVSKSDLEKKPTLLAELDMPGRPTCMTLKI-----------PTDLQTYIKEEQTKEEQMEP 1201
ME+V G Y V+FGF+ E + D + W FT H + +V+ N R++ TGS DETI ++D+KK +E G L+ +G+IT L+F G HL+SG+EDG IC+W ++ WE LK +K H+ ++ LS+HPSG+LALSV DK +RTWNL+ GR A+ N+K+ A +V WSP+G+ Y + + +K+ +Q+ A +K I +++FL+E+V+ +AGD E I F+D + L +AH+ R K + + P + ++ + SSDG +K W + K D + P+LL E++ R TC+ + + P + + +EQ+K + EP
Sbjct: 1 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCEFKAHENRVKDMFSFEIP----EHHVIVSASSDGFIKMWKL-KQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEP 334 The following BLAST results are available for this feature:
BLAST of TCONS_00055451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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