TCONS_00055448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055448
Unique NameTCONS_00055448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055448 ID=TCONS_00055448|Name=TCONS_00055448|organism=Clytia hemisphaerica|type=transcript|length=3013bp
CAAGAACCGGTTGACTGGACCCAAGGAGATCCAAACTGGCTTCAATTGGC
TCTGGTTTCACTTCCTGTAGAGGTTGATGTTGTTGAGCAGATGGTGGTTG
TTGGGCAGAAGATATTGGCTGAAAGGATGTTGCACCTGCCAAACTACTTG
TCGGTGGTAGTGAAGGTTGTGTGTTATTTGTTGGTGGATGAGAGACTACT
GCAGGTTTATTTGGTAGCGGTTGTTGTTGCTGGTCACTTATCAGAGGTGG
TATACCTGGAGTTGTGGTAGGTGGTACAGCTGCAAATACACTGTTGTTTG
GAATCGGTTGAAAATTAGAAGTAGAGCTGTTATGTAATGTCTGCATTGGT
GGTTTAGTTGCAATATGAGGAGGAGGCAAAACAGTGGTAGTTGTTGGAGG
AGGATGAATACCAGGAACCGCTTGAGGAGGATGCGCATTACTCATAGTGT
GGGTAGGTGGCATACCATGAACTGATTGTGGATGAGGTATACCTGGAAGG
GAATGTANTGTTATGGtgctgctgttgttgttgttgttgcataTTATTGG
TGCTTGTCATTGGAGCTGACGGAGTAAAGTTCAATTCCATATTGTCTGAT
GGATTAACTGGAGGTTGCCCACGATTGAAATTCAGAGGAGGTACAGTGGC
CTGAGGTTTTAAAGAATTATTTGAGGGTTTATTGGATTCTGGTAACAatg
tctgttgttgttgttgaggttgttttgatgaaaaatctaAAGACTGTTCG
TGATTAAAATGTATTGGTTGCTGCAGTCTATTATGATGGTTCAAATTCAC
CATCGGAGGAGGAATTTGAGACATGTGAGGGAACGCAGGGTTGGTTGTTG
GTGGAAAGGAGTTATTGGTAGTTGGTGGGAATCCCATGCCTGGGTGATGT
GTGTATGGTGGAGGAATTTGTTGGTGGAAATTAAGTGCATTCATATCATT
CCGAGTATTCAAGTTCATATTCAAATGTGGTTGCTGTTGTTTATATTGCT
GATCCTGTAACATATTAACAGGTTGTTGTTGCTTCTGAGAAGATTGTTGG
TTTGAAAAGTGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGGGTGG
AGGAGGTCCATTCGGTATCATTGTTGAAATATGATCAAACGGTGGTGCGT
CAATGCTGGTTGTCCTCGTTAGGATAGCGTTAACGGTTGACGGTACTGCT
GAAGTCACATCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTGGCTC
TTGCAACGAGATTGTCGTAGTTGTAGGAGGTGATAGCAGATTATCTGGTT
TAGTTTGAGGTACAGGTGCAATTGGAGGAAGAGGTCGGGCTTGCGACTGC
AAAGGTATATTAGTATCTTCTAGTTTTGGCTCTGGCTTTTCTTCATGCAA
ATCGAGACTGGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGAAAAATTGG
TGGCGAGAGTTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTTCAAA
CTTTCTACCGGTTTACACGAGCCAGATTGTGATGCAATAGGTTTAGGTAA
TATAGTTTCATTGGAACTTGAAGTGGTGATAGTGGTGAGAGGAGGAGGTA
TATCTTGAGTAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGTTAAA
GCTGATGCTGCAAAGGGTGAAGAAGTTGTCACAAGAGCAGAAACTGTTGT
GACGTCATTCTGTGTGGTTGGGGTAGGTGTTAAACCAAAGTTGGAGATAT
TGGGTGAAGAATCAATAGGGCTTATGATACCTTGTATGGTTGTATTTAAC
CTTTGTTCGAAGAAATCGCTATCATCGTCAAAGATCGATTTTGGTGGCTC
TAATGGAAGTCCAGAAAAGATCTCTTTCATATCATTGGCTATCAAACTTG
ATCTACTCATTTTAATTGGTTCAGGTTTAGGGATTACAGGTTTTTCGTCC
TTTTGAGCAGGCGGTTTGGATAAAGATAACTTTTTCGGAGTACTATCTGT
AGTATCCATTGCTTCAGACGATTCAGAAATACTACCAAAAACATCATCCT
CAGATTGTTCAATAACTTTAGCCTTTTCAGGCTCTTTCGTTAAGCTTTCT
CTACCTTTACAGCTTGTAGtagattgtttttcttttttatctttatttcg
AACAGAAGACCTTGACGATTGCCGCCTAGTTTTTCCAACACTTTTAGGTT
TTTCAGTCTCTTTATTAGTATTATCAGCTACGGGCATCTTTAACTGAGCT
TTCGTTTTGAATGGTTGGCCACCATTAGAACCAGAGTTCACTTTTACAGA
TGCTGAAGCCGTGTTCATACCCTCTATCCTTGTATTTTTACTCTTTGATT
TGTCCTTAGTTTCGTTACTTTTTGAAGATAGTTTATTGCGTTGGTCAGTC
TTTTTATCTTGTGATAAAGTAGAGTTTTTATTATTCAAGTCATTTTGTTG
ACTTTCAGCTTTTTTGCTGTCTTTACTGTACAAATTGTTCTTTTTGTGCA
ACACAAGAGAATCATTAATGTCACTCTGTTGGAAAGAATCAAATGCACTT
CGGTCTTCGGACTCGCTCATTGAAGTATTAGTAGTCGTATCTTTTTCAAG
ATCAGACAACTCTTTACCAATCAAATCGTCAACCGTGAAATTATCATGTG
AATTTGCAATTGGAAAATTATCAATGTCCTCAAACAACTTCATGTCACTG
TTCATGTTGTCTAAAGGACTAATAGGTTTTTCAGGGGATGATCCAAGTGA
AAAGCCCAAGGTAAATGGATGCGAATTAATGTCCATCAAGTCTAAACCAT
TACTAGCTCCCTTCATCAGTCCTGTGTTTTCTTCTTTCACCGCTACCGAT
GTCAGATTCATTTCTTTGGATTTTTCGGGGAACTTCAAACCCATCATGTT
TGTGGTATTATCATTAACGCCAATTGGAATTTCTGTTAGATAATTATTAT
TGTTGCTTGGCAATTCCTTTTTTATCTTGTCTGGTGGGTCAGCTTCTTTG
TTTGTATttggct
Run BLAST on NCBI

transcript from alignment at scaffold_253:1087901..1091617+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055448 ID=TCONS_00055448|Name=TCONS_00055448|organism=Clytia hemisphaerica|type=transcript|length=3717bp|location=Sequence derived from alignment at scaffold_253:1087901..1091617+ (Clytia hemisphaerica)
CAAGAACCGGTTGACTGGACCCAAGGAGATCCAAACTGGCTTCAATTGGC
TCTGGTTTCACTTCCTGTAGAGGTTGATGTTGTTGAGCAGATGGTGGTTG
TTGGGCAGAAGATATTGGCTGAAAGGATGTTGCACCTGCCAAACTACTTG
TCGGTGGTAGTGAAGGTTGTGTGTTATTTGTTGGTGGATGAGAGACTACT
GCAGGTTTATTTGGTAGCGGTTGTTGTTGCTGGTCACTTATCAGAGGTGG
TATACCTGGAGTTGTGGTAGGTGGTACAGCTGCAAATACACTGTTGTTTG
GAATCGGTTGAAAATTAGAAGTAGAGCTGTTATGTAATGTCTGCATTGGT
GGTTTAGTTGCAATATGAGGAGGAGGCAAAACAGTGGTAGTTGTTGGAGG
AGGATGAATACCAGGAACCGCTTGAGGAGGATGCGCATTACTCATAGTGT
GGGTAGGTGGCATACCATGAACTGATTGTGGATGAGGTATACCTGGAAGG
GAATGTANTGTTATGGtgctgctgttgttgttgttgttgcataTTATTGG
TGCTTGTCATTGGAGCTGACGGAGTAAAGTTCAATTCCATATTGTCTGAT
GGATTAACTGGAGGTTGCCCACGATTGAAATTCAGAGGAGGTACAGTGGC
CTGAGGTTTTAAAGAATTATTTGAGGGTTTATTGGATTCTGGTAACAatg
tctgttgttgttgttgaggttgttttgatgaaaaatctaAAGACTGTTCG
TGATTAAAATGTATTGGTTGCTGCAGTCTATTATGATGGTTCAAATTCAC
CATCGGAGGAGGAATTTGAGACATGTGAGGGAACGCAGGGTTGGTTGTTG
GTGGAAAGGAGTTATTGGTAGTTGGTGGGAATCCCATGCCTGGGTGATGT
GTGTATGGTGGAGGAATTTGTTGGTGGAAATTAAGTGCATTCATATCATT
CCGAGTATTCAAGTTCATATTCAAATGTGGTTGCTGTTGTTTATATTGCT
GATCCTGTAACATATTAACAGGTTGTTGTTGCTTCTGAGAAGGTTGTTGA
TTTGAATAGTGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGGGTGG
AGGAGGTCCATTCGGTATCATTGTTGAAATATGATCGAACGGTGGTGCGT
CAATGCTGGTTGTCCTTGTTAGGATAGCGTTAACGGTTGATGGTACTGCT
GAATTCACATCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTGGCTC
TTGCAATGAGATTGTCGTAGTTGTAGGAGGAGATAGCAGATTATCTGGTT
TAGTTTGAGGTACAGGTGCAATTGGAGGAAGAGGTTGGACTTGCGACTGC
AAAggtattttagtgttttttagtTTTGGCTCTGGCTTTTCTTCATGCAA
ATCGAGACTGGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGGAAAATTGG
TGGCGAGAGTTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTTCAAA
CTTTCTACCGGTTTACACGAGGCAGATTGTGATGCAATAGGTTTAGGTAA
TATAGTTTCATTGGAACTTGAAGTTGTGATAGTGGTGAGAGGAGGAGGTA
TATCTTGAGTAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGTTAAA
GCTGATGANTATTCAAGTTCATATTCAAATGTGGTTGCTGTTGTTTAAAT
TGCTGATCCTGTAACATATTAACAGGCGGTTGTTGCTTCTGAGAAGATTG
TTGGTTTGAAAAGTGTTGAAGCTGATTCATATTACTGTTCATTGAGTAGG
GTGGAGGAGGTCCATTCGGTATCATTGTTGAAATATGATCAAACGGTGGT
GCGTCAATGCTGGTTGTCCTCGTTAGGATAGCGTTAACGGTTGACGGTAC
TGCTGAAGTCACATCACGAGGATGACTGAAGGTTGTAGTGATCAGTGGTG
GCTCTTGCAACGAGATTGTCGTAGTTGTAGGAGGTGATAGCAGATTATCT
GGTTTAGTTTGAGGTACAGGTGCAATTGGAGGAAGAGGTCGGGCTTGCGA
CTGCAAAGGTATATTAGTATCTTCTAGTTTTGGCTCTGGCTTTTCTTCAT
GCAAATCGAGACTGGCTGGAAGATTGGTGAGGAGAGCTGGGGCTGAAAAA
TTGGTGGCGAGAGTTGGAGCTGTAGTTGGAGAGGTTTTGATTTCTTCCTT
CAAACTTTCTACCGGTTTACACGAGCCAGATTGTGATGCAATAGGTTTAG
GTAATATAGTTTCATTGGAACTTGAAGTGGTGATAGTGGTGAGAGGAGGA
GGTATATCTTGAGTAAAAGAAAGCAAGCCAGATGTCGTGTTCGTAGTAGT
TAAAGCTGATGCTGCAAAGGGTGAAGAAGTTGTCACAAGAGCAGAAACTG
TTGTGACGTCATTCTGTGTGGTTGGGGTAGGTGTTAAACCAAAGTTGGAG
ATATTGGGTGAAGAATCAATAGGGCTTATGATACCTTGTATGGTTGTATT
TAACCTTTGTTCGAAGAAATCGCTATCATCGTCAAAGATCGATTTTGGTG
GCTCTAATGGAAGTCCAGAAAAGATCTCTTTCATATCATTGGCTATCAAA
CTTGATCTACTCATTTTAATTGGTTCAGGTTTAGGGATTACAGGTTTTTC
GTCCTTTTGAGCAGGCGGTTTGGATAAAGATAACTTTTTCGGAGTACTAT
CTGTAGTATCCATTGCTTCAGACGATTCAGAAATACTACCAAAAACATCA
TCCTCAGATTGTTCAATAACTTTAGCCTTTTCAGGCTCTTTCGTTAAGCT
TTCTCTACCTTTACAGCTTGTAGtagattgtttttcttttttatctttat
ttcgAACAGAAGACCTTGACGATTGCCGCCTAGTTTTTCCAACACTTTTA
GGTTTTTCAGTCTCTTTATTAGTATTATCAGCTACGGGCATCTTTAACTG
AGCTTTCGTTTTGAATGGTTGGCCACCATTAGAACCAGAGTTCACTTTTA
CAGATGCTGAAGCCGTGTTCATACCCTCTATCCTTGTATTTTTACTCTTT
GATTTGTCCTTAGTTTCGTTACTTTTTGAAGATAGTTTATTGCGTTGGTC
AGTCTTTTTATCTTGTGATAAAGTAGAGTTTTTATTATTCAAGTCATTTT
GTTGACTTTCAGCTTTTTTGCTGTCTTTACTGTACAAATTGTTCTTTTTG
TGCAACACAAGAGAATCATTAATGTCACTCTGTTGGAAAGAATCAAATGC
ACTTCGGTCTTCGGACTCGCTCATTGAAGTATTAGTAGTCGTATCTTTTT
CAAGATCAGACAACTCTTTACCAATCAAATCGTCAACCGTGAAATTATCA
TGTGAATTTGCAATTGGAAAATTATCAATGTCCTCAAACAACTTCATGTC
ACTGTTCATGTTGTCTAAAGGACTAATAGGTTTTTCAGGGGATGATCCAA
GTGAAAAGCCCAAGGTAAATGGATGCGAATTAATGTCCATCAAGTCTAAA
CCATTACTAGCTCCCTTCATCAGTCCTGTGTTTTCTTCTTTCACCGCTAC
CGATGTCAGATTCATTTCTTTGGATTTTTCGGGGAACTTCAAACCCATCA
TGTTTGTGGTATTATCATTAACGCCAATTGGAATTTCTGTTAGATAATTA
TTATTGTTGCTTGGCAATTCCTTTTTTATCTTGTCTGGTGGGTCAGCTTC
TTTGTTTGTATttggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034891XLOC_034891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055448-exon-scaffold_253-1491911889:1087901..1088942TCONS_00055448-exon-scaffold_253-1491911889:1087901..1088942Clytia hemisphaericaexon
TCONS_00055448-exon-scaffold_253-1510915933:1087901..1088942TCONS_00055448-exon-scaffold_253-1510915933:1087901..1088942Clytia hemisphaericaexon
TCONS_00055448-exon-scaffold_253-1575043694:1087901..1088942TCONS_00055448-exon-scaffold_253-1575043694:1087901..1088942Clytia hemisphaericaexon
TCONS_00055448-exon-scaffold_253-1491911889:1089647..1091617TCONS_00055448-exon-scaffold_253-1491911889:1089647..1091617Clytia hemisphaericaexon
TCONS_00055448-exon-scaffold_253-1510915933:1089647..1091617TCONS_00055448-exon-scaffold_253-1510915933:1089647..1091617Clytia hemisphaericaexon
TCONS_00055448-exon-scaffold_253-1575043694:1089647..1091617TCONS_00055448-exon-scaffold_253-1575043694:1089647..1091617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1087901..1091617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.42807e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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