TCONS_00055432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055432
Unique NameTCONS_00055432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055432 ID=TCONS_00055432|Name=TCONS_00055432|organism=Clytia hemisphaerica|type=transcript|length=1365bp
AAAGAATAAACGATAAACTCATTTTCCTTTATTGTGACTTGTAGGCTTCA
AAATTTGTTTATATCGATATATCTCACAATGTTGGCCTCACCATTTTTTT
TGTATCATCTTATATTGATATCATGGAGTCTAAGAGGAGAAGCATCGTTT
ACCGGTTGGAGCCAACCCAAACAAAAGTCGATTCGCACAGACAAAGGTTC
AGAAGTCAACACAACCTATGCTATATACAAAAGAAATCCTTTACGGTGCG
CGATAAATGGAGCTTACGAAATAGTATTTGAAAGAACCATGGCTGAGTGC
GCTCAAAGCTGTACTGACGACAACAGGTGTTTAATGTGGTTTTTCCATAA
AAATCAACACCATTGTAAACTGTATAAATTTACTTTATATGATTTGCGAC
TGCACAGTATGTACAACCCTCACATGACGTACATTGACAGCTTTGAGCTT
AAGaatccTTGCACAGAGAATGCAAATTTATGTGAGCATGGGAGTTATTG
TGCGGCTGATCGGCCAACAGAAAGCTATGAATGCAAGAACTGTTTGGCAC
CCTTCACCGGTCAACACTGCAACGAAACTGCAGGCGATGATAACTTTATC
AGTGCGACAACAACTGATGATATATTATTTGGCTGTGCGGTCTCTTGTCG
TCATTTACGTCACTATAGCAACATCCTCGATTGGGATCACACTGTCCAAT
ACATACACCCTTGGAGAGATGACCGAAAAATCAAGGTGTTTTGTAAAGCA
GGATATATGGTTTTGAGTCATTTCCAACAAAACGTCACAACACCAATCAG
AGAAATCACCAAAAACGAATTGGCAGACGGTTTGGATTTGACAGTACCCA
ACTTTAGAGCACACACATCGTTTCTCAATGAATTATACAAATTGATTGAT
TTTGATAAATTCCAATTTACGTGTTTGCACCCGAATGGCACACACTTTGG
TATTAGTAACGAGCTTTGGACTCACCGCGAATGTGAAAGGGTAGTCAAAT
ACATGACTGATCAATCAACAAATGTCATTCCTACGACACATTGCATGACA
GGAATCTCTGGTTTCACAGGTATCTATAAAGACAGTGTACTAGACTCTAA
ATGGTCGGGATCGGGGACATCGCCCGACGAGCGACTCTTCTCGAACGTGG
TCGTACTAAATGATGGAACTCGATACAATTTTGGTTCGACTTTTGAATGC
TTCGATCAAGATGGACTTTGGACCGAATTCAAAGTTGAACTATGGTAGTG
GACCGAGACTTCTCTCAACAAACGTTTGgagaagttttgttttcaaattc
tttCCAAGAATATTTCTAGTCTTTTAAATTAAGGTTATCAAGGttcaatg
aaaattgaaaagcaC
Run BLAST on NCBI

transcript from alignment at scaffold_253:872041..875581+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055432 ID=TCONS_00055432|Name=TCONS_00055432|organism=Clytia hemisphaerica|type=transcript|length=3541bp|location=Sequence derived from alignment at scaffold_253:872041..875581+ (Clytia hemisphaerica)
AAAGAATAAACGATAAACTCATTTTCCTTTATTGTGACTTGTAGGCTTCA
AAATTTGTTTATATCGATATATCTCACAATGTTGGCCTCACCATTTTTTT
TGTATCATCTTATATTGATATCATGGAGTCTAAGAGGAGAAGCATCGTTT
ACCGGTTGGAGCCAACCCAAACAAAAGTCGATTCGCACAGACAAAGGTTC
AGAAGTCAACACAACCTATGCTATATACAAAAGAAATCCTTTACGGTGCG
CGATAAATGGAGCTTACGAAATAGTATTTGAAAGAACCATGGCTGAGTGC
GCTCAAAGCTGTACTGACGACAACAGGTGTTTAATGTGGTTTTTCCATAA
AAATCAACACCATTGTAAACTGTATAAATTTACTTTATATGATTTGCGAC
TGCACAGTATGTACAACCCTCACATGACGTACATTGACAGCTTTGAGCTT
AAGGTATATTCTTTATTGCTAAATTTCGCACACGTCCGGCtgactcaaaa
taaaaaaatagtacAAGTACATACGATATTCCATTTCAGGAAATTGGAAA
GGTTAATATTGGGTGATGAAGTCCATCGAAGGGTTTTCTTCATTCATTCG
ATTTAAAGCGTGTAAAAAAACCTTCATGACTGTATTTATCCTAATTCGCC
ATTTTTTCCGTTCGAATTAGaactttgatttctaaaaaaatttcttctag
ATAACACCTGACAGTAAGACTTTCCATATTTTTCCCAGCTTACTTTCAAA
TCATTCGCGAGTGTCGGTCGCTGATgttctctataattcgatattTTCTG
TTTATCGGCATAAAGGGAGACTTCGATGAAAGTGTTTGATGCGCTCCCGT
GCTTAATGATAATTGAAGAGAGCGTCAATTGTTTATTCAGATTTTCATTC
TCACATTCTAGCTCAACTGGAAGAATGAGAAAAGTTAATAAAatggtttt
caaataaagccattattctaccattttagaatccTTGCACAGAGAATGCA
AATTTATGTGAGCATGGGAGTTATTGTGCGGCTGATCGGCCAACAGAAAG
CTATGAATGCAAGAACTGTTTGGCACCCTTCACCGGTCAACACTGCAACG
AAACTGCAGGCGATGGTAAGTTCAGTAAAAAGTTTCTACAGTTGAGCCTC
CAGAACTCAAACCTCTACTACTCAACCTTAATTCgattaagttttatttt
tccttcactaaacaatgccttataaaccagtCTTCGTAGCTAAAAAATTC
TCTAGCAAATGAAAGCTCGccgtgtgtgttcgagttatagagattccACC
TTATCATTTTCAACAGAAAGACCTAAGCTTCTTTCaaaataagaaccagt
aaattttggctcaggctaagatgttcttaactttttgaaatctcTGGGCT
TAGttgttcttacaatgttctcAATAAGCGTGaagtttttctttgatttc
attaTATTTTAGATAACTTTATCAGTGCGACAACAACTGATGGTAAGTTT
GATTGGAGACCTCTTTTTCACATACAAATTCATTTCTGGTGTGGATCAAT
GCCGTGTGTCTACATACTAAAAGAGCTGTGCCAATCTCCACCATTTCAAT
TTCACACCCTTTGAACGCCTGACAATTCTCTCGTATGTTGCTCTATATTG
AAAGACAAGGCCTGACATAATCTCCGAGCGGATCCCGATTACTTTACGCA
CGGCGCACACTTATACGGATATAATTGTTTAGAATGAATTGGTTAAAGAA
GCTTGTCAGATCATCACATTTGCTGAATCTATTTAGATTCATCTGTTATT
GCCTGTTCCCCAAACCTTCCACCGTGGTAAGTAAATAACATTCTTCTCCA
ACTCTCCCTTTATAGATATATTATTTGGCTGTGCGGTCTCTTGTCGTCAT
TTACGTCACTATAGCAACATCCTCGATTGGGATCACACTGTCCAATACAT
ACACCCTTGGAGAGATGACCGAAAAATCAAGGTGTTTTGTAAAGGTATGT
TGTTTTTAAAGCTCGTCATTTTAGGTTTGGTTTATATACCCTcccatgga
attattatagacactggaaaaacaacaggctgatttttgcaaatttataa
tttgtacaagccttgtccgcagtaatgacattattgttcactctccttcc
accattaaatgattttcgtagcattttaattgcatcTCTCTTCAAAATAC
ACTTgtccaattcccaaatgagaatCCTCCCagattcaaactcatctagt
caattactaattatacgtcgttatgacgttttaaatttcgagaaagatgc
aaaaacatactatgtataagaaatttaatattgacaccagaaatttctaa
acttcaacctcaaaaaatccaccgtgccaccacgtgccatcaaaaacgtc
taatatatgtcaatctcagctcgtctcggagaaatattggaaagatattc
ccaattcaaaatttcgtgtcattataagcattttgtttgattttactcgt
ctgatgatgtttttctcacaccagatttcataaatgtattcgcttggtat
tctagcatttattttctaacttttagccagcaaaagtatgatcagaaaaa
gttagagagctttttagaaataacagtattaatcatttttcaaaatcaga
gtccttcgagccgccatgacagttgtcctttgcggacaaagcctgtacat
tgattgttttctgaaacaatagaaaaataatacttcgctctccaccgttt
cattcgatgtttatccagagtctctataataaatccatgacCCTCCTAAC
AGGGGTGTAAAGTCAGTTTCTAGGAGCTCTAAAAGTGACGTGTTGCGAAT
GAAAACCTTCTAATTACTAAATACTTATTTTAAATTCGTATTGTATTAAC
TTGAGCAATTCTGTTTACTTGCAGCAGGATATATGGTTTTGAGTCATTTC
CAACAAAACGTCACAACACCAATCAGAGAAATCACCAAAAACGAATTGGC
AGACGGTTTGGATTTGACAGTACCCAACTTTAGAGCACACACATCGTTTC
TCAATGAATTATACAAATTGATTGATTTTGATAAATTCCAATTTACGTGT
TTGCACCCGAATGGCACACACTTTGGTATTAGTAACGAGCTTTGGACTCA
CCGCGAATGTGAAAGGGTAGTCAAATACATGACTGATCAATCAACAAATG
TCATTCCTACGACACATTGCATGACAGGAATCTCTGGTTTCACAGGTATC
TATAAAGACAGTGTACTAGACTCTAAATGGTCGGGATCGGGGACATCGCC
CGACGAGCGACTCTTCTCGAACGTGGTCGTACTAAATGATGGAACTCGAT
ACAATTTTGGTTCGACTTTTGAATGCTTCGATCAAGATGGACTTTGGACC
GAATTCAAAGTTGAACTATGGTAGTGGACCGAGACTTCTCTCAACAAACG
TTTGgagaagttttgttttcaaattctttCCAAGAATATTTCTAGTCTTT
TAAATTAAGGTTATCAAGGttcaatgaaaattgaaaagcaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034883XLOC_034883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055432-exon-scaffold_253-1491911889:872041..872493TCONS_00055432-exon-scaffold_253-1491911889:872041..872493Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1510915933:872041..872493TCONS_00055432-exon-scaffold_253-1510915933:872041..872493Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1575043694:872041..872493TCONS_00055432-exon-scaffold_253-1575043694:872041..872493Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1491911889:873020..873155TCONS_00055432-exon-scaffold_253-1491911889:873020..873155Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1510915933:873020..873155TCONS_00055432-exon-scaffold_253-1510915933:873020..873155Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1575043694:873020..873155TCONS_00055432-exon-scaffold_253-1575043694:873020..873155Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1491911889:873503..873532TCONS_00055432-exon-scaffold_253-1491911889:873503..873532Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1510915933:873503..873532TCONS_00055432-exon-scaffold_253-1510915933:873503..873532Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1575043694:873503..873532TCONS_00055432-exon-scaffold_253-1575043694:873503..873532Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1491911889:873906..874034TCONS_00055432-exon-scaffold_253-1491911889:873906..874034Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1510915933:873906..874034TCONS_00055432-exon-scaffold_253-1510915933:873906..874034Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1575043694:873906..874034TCONS_00055432-exon-scaffold_253-1575043694:873906..874034Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1491911889:874965..875581TCONS_00055432-exon-scaffold_253-1491911889:874965..875581Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1510915933:874965..875581TCONS_00055432-exon-scaffold_253-1510915933:874965..875581Clytia hemisphaericaexon
TCONS_00055432-exon-scaffold_253-1575043694:874965..875581TCONS_00055432-exon-scaffold_253-1575043694:874965..875581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:872041..875581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0771392	0.22344	0.166844	0.17511	0.375666	0.175333	0.189573	0.184696	0.194045	0.0711672	0.110115	0.189477	1.55172	1.34675	0.749868	0.403077	0	0.165299	4.26296	2.69951	0.213426	0.217101	0.168741	0.545031	0.536938	1.38879	0.198989	0.179645	0.0340636	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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