TCONS_00055414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055414
Unique NameTCONS_00055414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055414 ID=TCONS_00055414|Name=TCONS_00055414|organism=Clytia hemisphaerica|type=transcript|length=2998bp
AGGATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacct
gCCTTGAAGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGA
GAAGAAGCAACAACAAGAAAAAGGGGATTTCAACAAGGAGTCCATGCTTC
TTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTG
TATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAG
TGATGTGGAGACGTATAAACTCCCCTATGAGGAAAGTGAATTCTTAGATT
ACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGT
GCTCAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGA
TTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAA
AACCAACCTCACAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGAC
CCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTT
AGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACA
CTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTA
CGAAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTT
ATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatca
aacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGA
GCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGT
GCCATCGAAAATAGACGTAACCTCACATGCAAAACTGATGGAACTACCGA
AATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAA
GGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAG
ACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACC
ATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTT
TCTCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGA
ACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCG
CAAACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAAC
AGTAACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaaca
acagaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAA
AGATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCAT
ACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCAT
TTCACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAAT
CACTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGGAATCCT
TACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAAC
CAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGC
TAACAACAGCTTACATCCAATCTGTATCGGGTGCAACGATAGGAGGAACT
TCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGT
CAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAA
CAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACCAGGC
AATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAA
GGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGC
AAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATA
CCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCAT
CATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAG
GACAAACTGTCATGATACAGGGACAGCCAGGACAACATCAAACTGGTCAG
AATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCA
AGGTCAACCGAATGGCCAAACGCAGGTTGTTCAAGGTCAAGCAATCATGT
TGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAACT
TCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAA
ACAAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTC
TCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGA
CAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCC
TGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTG
GGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAA
AACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTT
AATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTT
GATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAc
gaagttttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTCA
ttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAAT
CTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTAT
GGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACA
TTTAAATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682989..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055414 ID=TCONS_00055414|Name=TCONS_00055414|organism=Clytia hemisphaerica|type=transcript|length=11340bp|location=Sequence derived from alignment at scaffold_253:682989..694328+ (Clytia hemisphaerica)
AGGATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacct
gCCTTGAAGTGAGTATAataacataaaaaaatattttgattgtgTTATTA
ACTATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAA
CCTCTGttagaaagaaaaaatcagtcccatttattgactttttaaaattt
ttatacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAAT
AAATTTGGGAGATGGTtgggaaaaagatttttgatgggaattcattttgg
caatttttggtcaaaaatctTCATTAGATATTCTCATTAAAATCACATTA
TTCATATAGGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGG
AGAAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCT
TTTTTTTCTCCATAGTATATGGGTTGATATCAAAATATCCCATCATGTTT
TATTCCACCATGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTTATA
AGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAATAG
ATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaaca
cttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAA
GATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTG
GTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTG
GAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAG
TCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTG
AGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTG
CTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTAT
TGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAA
TCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAG
GAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCT
TGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACAT
ACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATC
CTCTCAAATTTTAGATGATCgtgctattcatgatattataccaccctaaA
TATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaac
ccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCT
TTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcctatt
ctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatc
tttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaaggg
caatgcattgactttagacagcccactttattaagcccactttaattcac
aattagaataggcagggcgaaaagtgggccgtctaaactagagctaacaT
CCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAA
GAGACTGAAATCCTATCAccaaatttttgcttttcaACTGCCTTCAGAAC
TCtcattttttcattgtttattactttttgataaaattttatacTACAGA
AAATTAAATATATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCA
TGAATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTG
ATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTA
AAACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTC
TCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttg
tagattttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAG
TACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCT
CTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGA
CCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTT
TAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTAC
ACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTT
ACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCT
GATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTG
ATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTA
TCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTC
ACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCAC
CATGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANgaaaaatataa
aaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTG
ATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTT
ATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAA
TAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAa
acacttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCA
AAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATC
CTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGAT
GTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACA
TAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTA
GTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATT
TTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTAT
TATTGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTG
AAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTA
TAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCT
CCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAA
CATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGA
ATCCTCTCAAATTTTAGATGATCgtgctattcatgatattataccaccct
aaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaa
aacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTC
GCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcct
attctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaa
atctttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaa
gggcaatgcattgactttagacagcccactttattaagcccactttaatt
cacaattagaataggcagggcgaaaagtgggccgtctaaactagagctaa
caTCCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTT
AAAGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGA
ACTCtcattttttcattgtttattactttttgataaGATTTTATACTACA
GAAAATTAAATATATTCCTATGTAACGATCGATGTTAAGAAATTCTTTGT
TTTCCATGAATAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGT
TACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATT
TTATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCA
GGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagatt
ttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGT
ACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAA
TCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAA
ATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTA
TGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCC
AACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAG
GTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGG
CAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAA
CATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGT
ATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCC
CTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTT
TGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAAT
TCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACA
AAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTT
TTTTATACATTCTAACTTCACTATACCATACACCtcctcacagacccact
gggactccttcccactggaaaaattggcctaaATATCGTCcctagtggaa
aattatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAAT
CCCCACTACTTATATCATGCTATTTTCTatcctcactgaattttctgact
taaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGA
TCCCCAACgaatttcagtccgttatttttacccccactggctgaaaaaat
cccacccccttctcacacacccgagaagggggtgtatcatttAATACCGA
TTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAA
CTAACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTT
CTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACC
TGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATAT
TATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTT
TCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCC
ACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTT
CCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATG
TGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAG
TTATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctcaca
gacccactgggactccttcccactggaaaaattggcctaaATATCGTCcc
tagtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCAAT
GAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaatt
ttctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGG
AATATCGATCCCCAACgaatttcagtccgttatttttacccccactggct
gaaaaaatcccaccgggtgtgtgagaagggggtgtatcatttAATACCGA
TTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAA
CTAACAATGACTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTT
CGATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaattttagtttaa
aCCACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCACATGCAAAAC
TGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAA
GAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCG
TGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCT
ACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGG
CGTGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGAC
GGTGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAATATGTCAACTC
AAATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTT
GACCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTT
ATGGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCATTt
ggtttttatcattttattttacattcTTTTCGAAAGGTTTTCTCTGGTCA
ACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACA
GAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGC
ACAAcgaaatcaacaacaacaacagcaacaagcACAAAACAGTAACAACG
CCTCACAACAAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCT
CAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGT
TTCGTCAGTTCCGACATCCACGACACAAATGACAACCCATACCATCGTCA
ATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGT
GGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTT
GGGATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTT
ACTTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgatttt
ctctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTT
ATACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTACAT
AACTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGT
AAAAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAA
ATAATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATTTAATTATTCA
ATCTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAA
GCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTC
TAATGAAAATGCACAGCTAACAACAGCTTACATCCAAGTAACTTCTCATA
AATTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTAATT
TTGAGCACCATCTAGATTACTTCTGATTGACACGACCATTCTCAAACCGC
TCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATAC
AACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAG
GAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAAC
AATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCC
ACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTAC
ATgatcaaatcttttttgttggaataataatattttgcaaaaagtATCAA
GTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATT
TGGCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGA
TATTAAATTGTATGTCATCCAATACcttacttatttttcaaagtattgta
attttaaagcttaaaagtatttgttgtttttgtaaacTTTCCAGGTACCA
GGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACA
AAAGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGA
AGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTC
ATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGC
CATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACAC
AAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTT
CTGTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatttgaaaactcT
GTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCA
TAAGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTT
CAATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGAC
TTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGCACT
GCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGACCATTCTAAAA
CCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTC
ATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATA
GGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGG
AAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCAT
CTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAG
GTACatcatcaaatcttttttgttggaataacaatattttgcaaaatgta
TCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTT
TATTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCC
TGGATATTAAATTGTATGTCATCCAATACcttacttatttttcaaagtat
tgtaattttaaagcttaaagctatttgttgtttttgtaaacTTTTCCAGG
TACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGA
CCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCA
CGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTA
CCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAG
ACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACA
AACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGA
CCTTTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttttgaaatttga
aaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTG
ATAAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTG
TTCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAG
GACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAA
GGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAG
CTATTCAACATTTAAATAACAGTTGACAGTTTCAAATGATTAATATGGTG
AAAATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTATTTTATAAAT
attatttgctttttctcataagGTACACCATAATATACACTGGTAGCGTT
TTTCCAATTTATTACCAACGAATTTCTTTTACTGTACACTTGTATGATAA
AAAAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAGACGAAGCTTC
ATTGCATATTGTTTGTGATTGTAGTTCATGACGAAATTATAGCCATTGTC
GGAGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTAC
AGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACAC
CAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACA
ACTTCAAATCGTCCCTCAAATACAAAAACAAGGTATAACTCGCCCATTTT
CATCTTTCTATAATAATAGTACCGGAGCTTtttgtatttgtatttttttg
taatgaaactttatcaaatgcaaacttaaaatttacttttaagATTTACA
ATATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAA
AGACCTTACAAAAACACTTATTATTCTTGATATTATTCTTATTTCAGCAG
TAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCT
TTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATA
TCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAAC
AGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAG
CGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCC
AAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGC
CTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATC
ATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagtttt
caatttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaa
acattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTG
TATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTA
TATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAAATG
TTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055414-exon-scaffold_253-1491911889:682989..683046TCONS_00055414-exon-scaffold_253-1491911889:682989..683046Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:682989..683046TCONS_00055414-exon-scaffold_253-1510915933:682989..683046Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:682989..683046TCONS_00055414-exon-scaffold_253-1575043694:682989..683046Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:683348..683414TCONS_00055414-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:683348..683414TCONS_00055414-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:683348..683414TCONS_00055414-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:685860..686015TCONS_00055414-exon-scaffold_253-1491911889:685860..686015Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:685860..686015TCONS_00055414-exon-scaffold_253-1510915933:685860..686015Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:685860..686015TCONS_00055414-exon-scaffold_253-1575043694:685860..686015Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:686292..686366TCONS_00055414-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:686292..686366TCONS_00055414-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:686292..686366TCONS_00055414-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:687052..687159TCONS_00055414-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:687052..687159TCONS_00055414-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:687052..687159TCONS_00055414-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:687348..687538TCONS_00055414-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:687348..687538TCONS_00055414-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:687348..687538TCONS_00055414-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:687715..687925TCONS_00055414-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:687715..687925TCONS_00055414-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:687715..687925TCONS_00055414-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:689270..689499TCONS_00055414-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:689270..689499TCONS_00055414-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:689270..689499TCONS_00055414-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:689775..690220TCONS_00055414-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:689775..690220TCONS_00055414-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:689775..690220TCONS_00055414-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:690548..690675TCONS_00055414-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:690548..690675TCONS_00055414-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:690548..690675TCONS_00055414-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:690864..691034TCONS_00055414-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:690864..691034TCONS_00055414-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:690864..691034TCONS_00055414-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:692388..692676TCONS_00055414-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:692388..692676TCONS_00055414-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:692388..692676TCONS_00055414-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:692889..692983TCONS_00055414-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:692889..692983TCONS_00055414-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:692889..692983TCONS_00055414-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:693341..693470TCONS_00055414-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:693341..693470TCONS_00055414-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:693341..693470TCONS_00055414-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1491911889:693686..694328TCONS_00055414-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1510915933:693686..694328TCONS_00055414-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055414-exon-scaffold_253-1575043694:693686..694328TCONS_00055414-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682989..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.65568e-07	0.00611415	6.8769e-05	3.62826e-05	0	0.0075428	1.18102e-06	1.10529e-07	0.0373727	1.34672e-06	9.25315e-10	5.75359e-09	0.000180671	1.00553e-08	0	0	5.92099e-08	0	2.67691e-05	0.785008	4.61057e-07	6.06815e-06	1.59331e-05	0	1.30239e-08	1.38804e-09
Blast
[Close]
BLAST of TCONS_00055414 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 1.681e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 3 
Query:   57 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1187
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.681e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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