TCONS_00055404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055404
Unique NameTCONS_00055404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3066

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055404 ID=TCONS_00055404|Name=TCONS_00055404|organism=Clytia hemisphaerica|type=transcript|length=3066bp
ATAGAATACAATAATGacaatataaaataaacaaataaaaatgttatcaA
CAGTTGATGCACTTGGATCTTCTGATCCATTCAATATGATGGTGAAAGAT
AtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGAGCGACT
TCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGATT
TCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTT
GGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGat
gttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATG
AGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTC
CTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGATGGCTG
TGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACTTTG
ATACCACCTACATTTTATTAAAACCAACCTCACAGACCATTGTTCGTGAT
GTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAA
ACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATC
CTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAAT
AAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTCACAGCC
CTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTT
TGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAAT
TCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACA
AAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCTCACATG
CAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGAAA
ATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTA
TTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCG
ATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAA
GATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACG
CTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAg
tcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaacaa
caacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAAC
ACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCTG
CACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCC
ACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCAC
TGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTTG
CAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACCA
ATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCA
ACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAG
CGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCTGTATCG
GGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTAT
CGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAG
CAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAA
ATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAG
AGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTT
CAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATA
CAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCT
TCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAG
GTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCA
GGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCA
AGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTTG
TTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGC
CAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCA
AATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCTGGACGCA
CGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGATC
CCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTAC
TTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAAC
CCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCT
TCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCTG
TATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGT
TCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTAC
TAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACATA
GTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTTG
TATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCTA
TAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTGA
CACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatatt
caaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682816..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055404 ID=TCONS_00055404|Name=TCONS_00055404|organism=Clytia hemisphaerica|type=transcript|length=11513bp|location=Sequence derived from alignment at scaffold_253:682816..694328+ (Clytia hemisphaerica)
ATAGAATACAATAATGacaatataaaataaacaaataaaaatgttatcaA
CAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTACAGTATGATAA
AACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTTTCCCTAATAA
TAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGGTGAAAG
ATAtgccagattttgaaaaacctgCCTTGAAGTGAGTATAataacataaa
aaaatattttgattgtgTTATTAACTATGCTACAAATACAAGGTGTTGTG
AATTTATTTGCTGTATTTTGAAACCTCTGttagaaagaaaaaatcagtcc
catttattgactttttaaaatttttatacaaatttgatTTAGTGGAGTGC
TGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATGGTtgggaaaaaga
tttttgatgggaattcattttggcaatttttggtcaaaaatctTCATTAG
ATATTCTCATTAAAATCACATTATTCATATAGGAAATCACTATTTGAGCG
ACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGG
TAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATAGTATATGGGTTGA
TATCAAAATATCCCATCATGTTTTATTCCACCATGGTATGTGATATAGTG
TTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaatct
ttttgaaatatgataaacAATAGATATTACATTGAACAACTACTGAAATT
CAGTATGAAATAATATTGAaacacttttatttttccttaaGGATTTCAAC
AAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGT
TCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatgttga
aaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTA
ATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTATGACAT
ATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACT
TAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTGAAGAG
GATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaaaaata
taaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTC
CTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGAT
ACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGT
TTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTACATAA
TGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgctat
tcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTATTGGTT
TTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTACCTTC
CCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacg
gccgactttctgtcctgcctattctaattgttagtgTAGGCAGAAAGCGT
Acacaaagttggcagttaaaatctttgcttggaaaagattgaaagaagtc
attgcgttgacgtcaaaaaagggcaatgcattgactttagacagcccact
ttattaagcccactttaattcacaattagaataggcagggcgaaaagtgg
gccgtctaaactagagctaacaTCCACCTGTTTGttattcttttgaaaag
aattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCAccaaatttt
tgcttttcaACTGCCTTCAGAACTCtcattttttcattgtttattacttt
ttgataaaattttatacTACAGAAAATTAAATATATCCCTATGTAACGAT
GTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGATGG
CTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACT
TTGATACCACCTACATTTTATTAAAACCAACCTCACAGGTAAGCAGTATT
TTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAACTCCTTTTAATAC
ACATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCATTTT
CCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTAC
CTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGT
GATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGC
CAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAG
ATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCC
AATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGT
GTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCAC
TACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTT
AACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTAT
TTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTT
ATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTCATCA
AACAAAACAAANgaaaaatataaaaatacttcTGGTTTTGAAATCATCAT
GTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTG
AATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaa
tctttttgaaatatgataaacAATAGATATTACATTGAACAACTACTGAA
ATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGATTTC
AACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGG
TGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatgt
tgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAG
GTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTATGA
CATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGAT
ACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTGAA
GAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaaaa
atataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGT
TTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTG
GATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCA
GGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTACA
TAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgc
tattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTATTG
GTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTACC
TTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctag
acggccgactttctgtcctgcctattctaattgttagtgTAGGCAGAAAG
CGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaagaa
gtcattgcgttgacgtcaaaaaagggcaatgcattgactttagacagccc
actttattaagcccactttaattcacaattagaataggcagggcgaaaag
tgggccgtctaaactagagctaacaTCCACCTGTTTGttattcttttgaa
aagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCACCAAAT
TTTGCTTTTCAACTGCCTTCAGAACTCtcattttttcattgtttattact
ttttgataaGATTTTATACTACAGAAAATTAAATATATTCCTATGTAACG
ATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTA
TGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGA
AAAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGGTAAGC
AGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACATTT
GTTCTCTTACTTGGttgtagattttattttcattgaagCATTTTCCAACT
GATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTATAT
CTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTA
AACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACT
AGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTT
CACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAATAAA
TGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGT
TCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAA
TAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACT
ATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGG
TCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTC
TCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaa
acaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACC
CAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATC
GAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTATACC
ATACACCtcctcacagacccactgggactccttcccactggaaaaattgg
cctaaATATCGTCcctagtggaaaattatacactTAATTTGTATCCCAAC
TAAAAATAATCCAATGAACTAATCCCCACTACTTATATCATGCTATTTTC
TatcctcactgaattttctgacttaaaaacaatggaatttaaatccaCAG
TCATAAAAGTATAGGAATATCGATCCCCAACgaatttcagtccgttattt
ttacccccactggctgaaaaaatcccacccccttctcacacacccgagaa
gggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAGAGC
TCAAAGTATGAACTAATCATGAACTAACAGTGACTCCTTGCANGGATTCA
GTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTC
ACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTT
TTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCT
ATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATAT
TTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcat
caaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTA
GAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCT
GTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTC
ACTATACCATACACCtcctcacagacccactgggactccttcccactgga
aaaattggcctaaATATCGTCcctagtggaaaattatacactTAATTTGT
ATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCATG
CTATTTTCTatcctcactgaattttctgacttaaaaacaatggaatttaa
atccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcagtc
cgttatttttacccccactggctgaaaaaatcccaccgggtgtgtgagaa
gggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAGAGC
TCAAAGTATGAACTAATCGTGAACTAACAATGACTCCTTGCAAACAGTAT
TTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAAGGAATAAGTTAt
ttgatatttcaattttagtttaaaCCACGACTCTCATTTTACAAACTCTT
TTAGGTAACCTCACATGCAAAACTGATGGAACTACCGAAATACACAACAG
ATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACC
AACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAAC
AGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGA
AGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTGTCTTTTTTGTT
AATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACACCCATGAGGACA
GATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGACTTCAAAAGTTAT
GGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTGTTTTATTTGTAG
AATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCTATAGTTAGATCT
ATTTATCAAGCTTTGTATCATTtggtttttatcattttattttacattcT
TTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACGCTATTTAC
AACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatt
tcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaacaacaacagca
acaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAACACAAgcac
aacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCTGCACACCAG
GCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCCACGACACA
AATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTC
AGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTTGCAAGCTCG
GCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACCAATGTCGTT
ATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCTTGTGTCTCTACT
AAGATTTTCTCATCTAAgattttctctatttttcgCTTCTAGAATAGTTC
CTCTGTTCCACATCCAAAATCTTATACAACATAACCAGTAAACTCTCTTT
TTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAGTAAGGACAACCC
AGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCTTAAGGGGTCAGA
AAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTATGAAGAGATGCT
TTAACATTCAATTTAATTATTCAATCTTCTAGGGAATCCTTACATAGTAA
ATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCG
CCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGC
TTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTTTTTTAATTCCAA
TTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAGATTACTTCTGAT
TGACACGACCATTCTCAAACCGCTCAACTCGTAATACAAATGCTTGTTCA
GTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCTTCAGTC
TGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAG
TTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAG
TTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCAC
TGGGCAAATCATGCTGCAGGTACATgatcaaatcttttttgttggaataa
taatattttgcaaaaagtATCAAGTTATTGACTCTAGTTGGTCTAAGTTG
TCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAATAGTGTGAATTGA
GCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAATACct
tacttatttttcaaagtattgtaattttaaagcttaaaagtatttgttgt
ttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATG
ACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCAT
GGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCA
TGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCA
GGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGT
GCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGAC
AGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAAtc
gtaatttgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCATTAC
TTATTGAAATTATTTGATAAGCATAAGCAGTTACCATCTCTTCCTCGGCA
TATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGTAGTAACTCGTTT
CGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAAT
ACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGTATTCATCCAAGG
TCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAATACAAATGCTTG
TTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCTTC
AGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACG
GCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAA
TCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTG
CCACTGGGCAAATCATGCTGCAGGTACatcatcaaatcttttttgttgga
ataacaatattttgcaaaatgtaTCAAGTTATTGACTCTAGTTGGTCTAA
GTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTTTAATACTGTGAA
TTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAAT
ACcttacttatttttcaaagtattgtaattttaaagcttaaagctatttg
ttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTC
AAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCT
GGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGG
CGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGA
TCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATC
TTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACA
GGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGAT
AAatcgtaatttttgaaatttgaaaactcTGTGATAAAATGGGATTTCTA
GCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCAACTCTTC
CTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTAACTCGTTTCGAG
CTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAATACTT
TGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAA
CCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAAATAACAGTTGAC
AGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCTATTTAGTACTCT
ACTTTTTAATGTATTTTATAAATattatttgctttttctcataagGTACA
CCATAATATACACTGGTAGCGTTTTTCCAATTTATTACCAACGAATTTCT
TTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTAAGATATATACTT
CGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTGTGATTGTAGTTC
ATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTATTCAAAGTATTT
TTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTCAAGCAATCATGT
TGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAACT
TCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAA
ACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATAATAGTACCGGAG
CTTtttgtatttgtatttttttgtaatgaaactttatcaaatgcaaactt
aaaatttacttttaagATTTACAATATTAGACCCTGTTAGATTTTTTGCC
CACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAACACTTATTATTCT
TGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAGCTGGACGCACGC
AATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGATCCCT
ATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTACTTC
CGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCA
ACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCT
CCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCTGTAT
GATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCT
GAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTACTAG
TCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACATAGTC
ATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTTGTAT
AGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCTATAA
ACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTGACAC
AAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatattcaa
aaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055404-exon-scaffold_253-1491911889:682816..682888TCONS_00055404-exon-scaffold_253-1491911889:682816..682888Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:682816..682888TCONS_00055404-exon-scaffold_253-1510915933:682816..682888Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:682816..682888TCONS_00055404-exon-scaffold_253-1575043694:682816..682888Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:682991..683046TCONS_00055404-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:682991..683046TCONS_00055404-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:682991..683046TCONS_00055404-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:683348..683414TCONS_00055404-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:683348..683414TCONS_00055404-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:683348..683414TCONS_00055404-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:683657..683812TCONS_00055404-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:683657..683812TCONS_00055404-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:683657..683812TCONS_00055404-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:684089..684163TCONS_00055404-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:684089..684163TCONS_00055404-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:684089..684163TCONS_00055404-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:684846..684953TCONS_00055404-exon-scaffold_253-1491911889:684846..684953Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:684846..684953TCONS_00055404-exon-scaffold_253-1510915933:684846..684953Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:684846..684953TCONS_00055404-exon-scaffold_253-1575043694:684846..684953Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:685154..685344TCONS_00055404-exon-scaffold_253-1491911889:685154..685344Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:685154..685344TCONS_00055404-exon-scaffold_253-1510915933:685154..685344Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:685154..685344TCONS_00055404-exon-scaffold_253-1575043694:685154..685344Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:687715..687925TCONS_00055404-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:687715..687925TCONS_00055404-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:687715..687925TCONS_00055404-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:689270..689499TCONS_00055404-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:689270..689499TCONS_00055404-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:689270..689499TCONS_00055404-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:689775..690220TCONS_00055404-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:689775..690220TCONS_00055404-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:689775..690220TCONS_00055404-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:690548..690675TCONS_00055404-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:690548..690675TCONS_00055404-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:690548..690675TCONS_00055404-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:690864..691038TCONS_00055404-exon-scaffold_253-1491911889:690864..691038Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:690864..691038TCONS_00055404-exon-scaffold_253-1510915933:690864..691038Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:690864..691038TCONS_00055404-exon-scaffold_253-1575043694:690864..691038Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:692392..692676TCONS_00055404-exon-scaffold_253-1491911889:692392..692676Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:692392..692676TCONS_00055404-exon-scaffold_253-1510915933:692392..692676Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:692392..692676TCONS_00055404-exon-scaffold_253-1575043694:692392..692676Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:692889..692983TCONS_00055404-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:692889..692983TCONS_00055404-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:692889..692983TCONS_00055404-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:693341..693470TCONS_00055404-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:693341..693470TCONS_00055404-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:693341..693470TCONS_00055404-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1491911889:693689..694328TCONS_00055404-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1510915933:693689..694328TCONS_00055404-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055404-exon-scaffold_253-1575043694:693689..694328TCONS_00055404-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682816..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.1185e-09	0	1.83377	1.27895	3.95463	4.35938	0.775828	4.03004e-08	9.41187e-06	0.141913	1.1036e-05	0.0488551	1.29107	2.13203	0.734962	0.938002	0.433903	1.14118	0.000126685	0.00939234	0.070601	0.131602	0.0231749	4.00398e-06	2.86377e-10	0.154531	0.778401	0.144193
Blast
[Close]
BLAST of TCONS_00055404 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.718e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 2 
Query:  128 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1258
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.718e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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