TCONS_00055403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055403
Unique NameTCONS_00055403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055403 ID=TCONS_00055403|Name=TCONS_00055403|organism=Clytia hemisphaerica|type=transcript|length=3069bp
CTGATAGAATACAATAATGacaatataaaataaacaaataaaaatgttat
caACAGTTGATGCACTTGGATCTTCTGATCCATTCAATATGATGGTGAAA
GATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGAGCG
ACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGG
ATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGAC
CTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACT
GatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCT
ATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCT
CTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGATGG
TTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAAACT
TTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTGTTCGT
GATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGC
CAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAG
ATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCC
AATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTCACA
GCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCAT
GTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGT
AATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAA
ACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCTCAC
ATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAG
AAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTA
TTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTG
GCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAG
AAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGCGCA
ACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAAT
CAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaa
caacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAA
AACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAG
CTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACA
TCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTT
CACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTC
TTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTA
CCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAACCT
TCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTG
GAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCTGTA
TCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCC
TATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCA
TAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGG
CAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGAC
CAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGG
CTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATG
ATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGG
TCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGC
AAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAG
CCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACT
GCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGG
TTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAG
GGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACT
TCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCTGGAC
GCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTG
ATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCAC
TACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTC
AACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAA
CCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACAT
CTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTC
TGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTT
TACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATAC
ATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTG
TTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTG
CTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTT
TGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggat
attcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682813..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055403 ID=TCONS_00055403|Name=TCONS_00055403|organism=Clytia hemisphaerica|type=transcript|length=11516bp|location=Sequence derived from alignment at scaffold_253:682813..694328+ (Clytia hemisphaerica)
CTGATAGAATACAATAATGacaatataaaataaacaaataaaaatgttat
caACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTACAGTATGA
TAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTTTCCCTAA
TAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGGTGA
AAGATAtgccagattttgaaaaacctgCCTTGAAGTGAGTATAataacat
aaaaaaatattttgattgtgTTATTAACTATGCTACAAATACAAGGTGTT
GTGAATTTATTTGCTGTATTTTGAAACCTCTGttagaaagaaaaaatcag
tcccatttattgactttttaaaatttttatacaaatttgatTTAGTGGAG
TGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATGGTtgggaaaa
agatttttgatgggaattcattttggcaatttttggtcaaaaatctTCAT
TAGATATTCTCATTAAAATCACATTATTCATATAGGAAATCACTATTTGA
GCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAG
GGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATAGTATATGGGT
TGATATCAAAATATCCCATCATGTTTTATTCCACCATGGTATGTGATATA
GTGTTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaa
tctttttgaaatatgataaacAATAGATATTACATTGAACAACTACTGAA
ATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGATTTC
AACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGG
TGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatgt
tgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAG
GTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTATGA
CATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGAT
ACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTGAA
GAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaaaa
atataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGT
TTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTG
GATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCA
GGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTACA
TAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgc
tattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTATTG
GTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTACC
TTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctag
acggccgactttctgtcctgcctattctaattgttagtgTAGGCAGAAAG
CGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaagaa
gtcattgcgttgacgtcaaaaaagggcaatgcattgactttagacagccc
actttattaagcccactttaattcacaattagaataggcagggcgaaaag
tgggccgtctaaactagagctaacaTCCACCTGTTTGttattcttttgaa
aagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCAccaaat
ttttgcttttcaACTGCCTTCAGAACTCtcattttttcattgtttattac
tttttgataaaattttatacTACAGAAAATTAAATATATCCCTATGTAAC
GATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGA
TGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAA
ACTTTGATACCACCTACATTTTATTAAAACCAACCTCACAGGTAAGCAGT
ATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAACTCCTTTTAA
TACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCAT
TTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAAC
TACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTT
CGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAA
GGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTT
TAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCAT
GCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTC
AGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGT
CACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGT
TTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTC
TATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATA
TTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTCA
TCAAACAAAACAAANgaaaaatataaaaatacttcTGGTTTTGAAATCAT
CATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAA
GTGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTGCACTTTTTc
caatctttttgaaatatgataaacAATAGATATTACATTGAACAACTACT
GAAATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGAT
TTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCT
TGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGa
tgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTAT
GAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTA
TGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAG
GATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACT
GAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtga
aaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATT
TGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTAC
TTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGC
TCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGT
ACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCg
tgctattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTA
TTGGTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGT
ACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtc
tagacggccgactttctgtcctgcctattctaattgttagtgTAGGCAGA
AAGCGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaa
gaagtcattgcgttgacgtcaaaaaagggcaatgcattgactttagacag
cccactttattaagcccactttaattcacaattagaataggcagggcgaa
aagtgggccgtctaaactagagctaacaTCCACCTGTTTGttattctttt
gaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCACCA
AATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttcattgtttatt
actttttgataaGATTTTATACTACAGAAAATTAAATATATTCCTATGTA
ACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATT
CTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTC
AGAAAAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGGTA
AGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACA
TTTGTTCTCTTACTTGGttgtagattttattttcattgaagCATTTTCCA
ACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTA
TATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGAT
GTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAA
ACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATC
CTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAAT
AAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTT
AGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTAC
CAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAAC
ACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTT
AGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATG
TTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaac
aaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCC
ACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCC
ATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTAT
ACCATACACCtcctcacagacccactgggactccttcccactggaaaaat
tggcctaaATATCGTCcctagtggaaaattatacactTAATTTGTATCCC
AACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCATGCTATT
TTCTatcctcactgaattttctgacttaaaaacaatggaatttaaatcca
CAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcagtccgtta
tttttacccccactggctgaaaaaatcccacccccttctcacacacccga
gaagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAG
AGCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCCTTGCANGGAT
TCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAAT
GTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAAT
GTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCAT
TCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCA
TATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTT
catcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGA
GTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTA
TCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAAC
TTCACTATACCATACACCtcctcacagacccactgggactccttcccact
ggaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAATT
TGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATC
ATGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaatt
taaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttca
gtccgttatttttacccccactggctgaaaaaatcccaccgggtgtgtga
gaagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAG
AGCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCCTTGCAAACAG
TATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAAGGAATAAGT
TAtttgatatttcaattttagtttaaaCCACGACTCTCATTTTACAAACT
CTTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCGAAATACACAA
CAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAG
ACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTC
AACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAA
CGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTGTCTTTTTT
GTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACACCCATGAGG
ACAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGACTTCAAAAGT
TATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTGTTTTATTTG
TAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCTATAGTTAGA
TCTATTTATCAAGCTTTGTATCATTtggtttttatcattttattttacat
tcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACGCTATT
TACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAgtcaaa
atttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaacaacaaca
gcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAACACAAg
cacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCTGCACAC
CAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCCACGAC
ACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCACTGTGG
CTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTTGCAAGC
TCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACCAATGTC
GTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCTTGTGTCTCT
ACTAAGATTTTCTCATCTAAgattttctctatttttcgCTTCTAGAATAG
TTCCTCTGTTCCACATCCAAAATCTTATACAACATAACCAGTAAACTCTC
TTTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAGTAAGGACAA
CCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCTTAAGGGGTC
AGAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTATGAAGAGAT
GCTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAATCCTTACATAG
TAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACCAA
TCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAAC
AGCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTTTTTTAATTC
CAATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAGATTACTTCT
GATTGACACGACCATTCTCAAACCGCTCAACTCGTAATACAAATGCTTGT
TCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCTTCA
GTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGG
CAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAAT
CAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGC
CACTGGGCAAATCATGCTGCAGGTACATgatcaaatcttttttgttggaa
taataatattttgcaaaaagtATCAAGTTATTGACTCTAGTTGGTCTAAG
TTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAATAGTGTGAAT
TGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAATA
Ccttacttatttttcaaagtattgtaattttaaagcttaaaagtatttgt
tgtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAA
ATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGG
CATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCG
CCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATC
CCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTT
CGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGG
GACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAA
AtcgtaatttgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCAT
TACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCATCTCTTCCTCG
GCATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGTAGTAACTCG
TTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAG
AATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGTATTCATCCA
AGGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAATACAAATGC
TTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGC
TTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTA
ACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGG
TAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAG
GTGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaatcttttttgtt
ggaataacaatattttgcaaaatgtaTCAAGTTATTGACTCTAGTTGGTC
TAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTTTAATACTGT
GAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCC
AATACcttacttatttttcaaagtattgtaattttaaagcttaaagctat
ttgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTGTACCACTCT
CTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGT
GCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGG
AGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCAT
TGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCC
ATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGAT
ACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCA
GATAAatcgtaatttttgaaatttgaaaactcTGTGATAAAATGGGATTT
CTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCAACTC
TTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTAACTCGTTTC
GAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAATA
CTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGGT
CAACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAAATAACAGTT
GACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCTATTTAGTAC
TCTACTTTTTAATGTATTTTATAAATattatttgctttttctcataagGT
ACACCATAATATACACTGGTAGCGTTTTTCCAATTTATTACCAACGAATT
TCTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTAAGATATATA
CTTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTGTGATTGTAG
TTCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTATTCAAAGTA
TTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTCAAGCAATCA
TGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACA
ACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACA
AAAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATAATAGTACCG
GAGCTTtttgtatttgtatttttttgtaatgaaactttatcaaatgcaaa
cttaaaatttacttttaagATTTACAATATTAGACCCTGTTAGATTTTTT
GCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAACACTTATTAT
TCTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAGCTGGACGCA
CGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGATC
CCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTAC
TTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAAC
CCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCT
TCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCTG
TATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGT
TCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTAC
TAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACATA
GTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTTG
TATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCTA
TAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTGA
CACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatatt
caaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055403-exon-scaffold_253-1491911889:682813..682888TCONS_00055403-exon-scaffold_253-1491911889:682813..682888Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:682813..682888TCONS_00055403-exon-scaffold_253-1510915933:682813..682888Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:682813..682888TCONS_00055403-exon-scaffold_253-1575043694:682813..682888Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:682991..683046TCONS_00055403-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:682991..683046TCONS_00055403-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:682991..683046TCONS_00055403-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:683348..683414TCONS_00055403-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:683348..683414TCONS_00055403-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:683348..683414TCONS_00055403-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:683657..683812TCONS_00055403-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:683657..683812TCONS_00055403-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:683657..683812TCONS_00055403-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:686292..686366TCONS_00055403-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:686292..686366TCONS_00055403-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:686292..686366TCONS_00055403-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:687052..687159TCONS_00055403-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:687052..687159TCONS_00055403-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:687052..687159TCONS_00055403-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:687348..687538TCONS_00055403-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:687348..687538TCONS_00055403-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:687348..687538TCONS_00055403-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:688523..688733TCONS_00055403-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:688523..688733TCONS_00055403-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:688523..688733TCONS_00055403-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:689270..689499TCONS_00055403-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:689270..689499TCONS_00055403-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:689270..689499TCONS_00055403-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:689775..690220TCONS_00055403-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:689775..690220TCONS_00055403-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:689775..690220TCONS_00055403-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:690548..690675TCONS_00055403-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:690548..690675TCONS_00055403-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:690548..690675TCONS_00055403-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:690864..691038TCONS_00055403-exon-scaffold_253-1491911889:690864..691038Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:690864..691038TCONS_00055403-exon-scaffold_253-1510915933:690864..691038Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:690864..691038TCONS_00055403-exon-scaffold_253-1575043694:690864..691038Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:691287..691571TCONS_00055403-exon-scaffold_253-1491911889:691287..691571Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:691287..691571TCONS_00055403-exon-scaffold_253-1510915933:691287..691571Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:691287..691571TCONS_00055403-exon-scaffold_253-1575043694:691287..691571Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:692889..692983TCONS_00055403-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:692889..692983TCONS_00055403-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:692889..692983TCONS_00055403-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:693341..693470TCONS_00055403-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:693341..693470TCONS_00055403-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:693341..693470TCONS_00055403-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1491911889:693689..694328TCONS_00055403-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1510915933:693689..694328TCONS_00055403-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055403-exon-scaffold_253-1575043694:693689..694328TCONS_00055403-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682813..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.9742	5.5676	0.241428	0.698065	1.25543e-07	0	2.35907e-05	7.64864e-10	7.56697e-07	9.18399e-06	6.45036e-10	0	0.000240362	0	8.03609e-07	0	0	0	7.20801e-10	0	0.464733	3.30483e-05	0	0	0	0
Blast
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BLAST of TCONS_00055403 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.734e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 2 
Query:  131 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1261
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.734e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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