TCONS_00055402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055402
Unique NameTCONS_00055402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055402 ID=TCONS_00055402|Name=TCONS_00055402|organism=Clytia hemisphaerica|type=transcript|length=3076bp
TTAGAATCTGATAGAATACAATAATGacaatataaaataaacaaataaaa
atgttatcaACAGTTGATGCACTTGGATCTTCTGATCCATTCAATATGAT
GGTGAAAGATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTAT
TTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAA
AAAGGGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGA
AGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGAT
ATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAA
CTCCCCTATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACT
ACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCT
ATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAG
AAAAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCAT
TGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAG
ACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTG
TGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACA
CCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGAT
TTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCG
CCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacG
TTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACA
TGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTA
ACCTCACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATAC
GCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACC
GTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAA
TATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGA
TACGAAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCA
CAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGT
CGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaa
tcaacaacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAAC
AAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTA
CAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGT
TCCGACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATC
GCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACA
TACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAA
TGTTGTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAG
GAAACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAA
ATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCA
ATCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGG
CAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAAT
CAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGC
CACTGGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTC
AAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCT
GGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGG
CGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGA
TCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATC
TTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACA
GGGACAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGAC
AAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAA
ACGCAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGG
ACACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCC
AACAACTTCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCA
GCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGT
TAACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTC
AATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGT
GCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACC
TACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCAT
TTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGA
AGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAAT
GTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgC
GGCATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgtt
gcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATC
TCTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAA
CTACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATC
TTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682806..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055402 ID=TCONS_00055402|Name=TCONS_00055402|organism=Clytia hemisphaerica|type=transcript|length=11523bp|location=Sequence derived from alignment at scaffold_253:682806..694328+ (Clytia hemisphaerica)
TTAGAATCTGATAGAATACAATAATGacaatataaaataaacaaataaaa
atgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTAC
AGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTT
TCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATG
ATGGTGAAAGATAtgccagattttgaaaaacctgCCTTGAAGTGAGTATA
ataacataaaaaaatattttgattgtgTTATTAACTATGCTACAAATACA
AGGTGTTGTGAATTTATTTGCTGTATTTTGAAACCTCTGttagaaagaaa
aaatcagtcccatttattgactttttaaaatttttatacaaatttgatTT
AGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATGGTt
gggaaaaagatttttgatgggaattcattttggcaatttttggtcaaaaa
tctTCATTAGATATTCTCATTAAAATCACATTATTCATATAGGAAATCAC
TATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAA
GAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATAGTA
TATGGGTTGATATCAAAATATCCCATCATGTTTTATTCCACCATGGTATG
TGATATAGTGTTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCACTT
TTTccaatctttttgaaatatgataaacAATAGATATTACATTGAACAAC
TACTGAAATTCAGTATGAAATAATATTGAaacacttttatttttccttaa
GGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACG
ACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCA
CTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCC
CTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAAC
ATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATG
AGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGA
AACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATga
gtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATT
GATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGA
TTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGA
GTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAA
TCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATG
ATCgtgctattcatgatattataccaccctaaATATTTTCCCAAACAAAG
GGTATTGGTTTTCAAATattagaagctgaaaacccacttttCTTGGTATT
TTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCT
AGtctagacggccgactttctgtcctgcctattctaattgttagtgTAGG
CAGAAAGCGTAcacaaagttggcagttaaaatctttgcttggaaaagatt
gaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattgactttag
acagcccactttattaagcccactttaattcacaattagaataggcaggg
cgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTTGttattc
ttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATC
AccaaatttttgcttttcaACTGCCTTCAGAACTCtcattttttcattgt
ttattactttttgataaaattttatacTACAGAAAATTAAATATATCCCT
ATGTAACGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTAT
TCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACT
CAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACCTCACAGGT
AAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAACTC
CTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttattttcatt
gaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAG
TGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGAC
CATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACG
AAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGA
CTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACA
ACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAA
TGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAAC
CCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAA
TCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAG
CCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACC
GTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTA
GATTTCATCAAACAAAACAAANgaaaaatataaaaatacttcTGGTTTTG
AAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTA
TAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTGCA
CTTTTTccaatctttttgaaatatgataaacAATAGATATTACATTGAAC
AACTACTGAAATTCAGTATGAAATAATATTGAaacacttttatttttcct
taaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAG
ACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATAT
TCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACT
CCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAG
AACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAAT
ATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACT
TGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAA
TgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATC
ATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTT
AGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGG
AGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTG
GAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAG
ATGATCgtgctattcatgatattataccaccctaaATATTTTCCCAAACA
AAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttCTTGGT
ATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGC
TCTAGtctagacggccgactttctgtcctgcctattctaattgttagtgT
AGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttggaaaag
attgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattgactt
tagacagcccactttattaagcccactttaattcacaattagaataggca
gggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTTGtta
ttcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCT
ATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttcatt
gtttattactttttgataaGATTTTATACTACAGAAAATTAAATATATTC
CTATGTAACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTG
ATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGA
AGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAACCAACCTC
ACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTTTA
ATACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCA
TTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAA
CTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGT
TCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACA
AGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGT
TTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCA
TGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATT
CAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATG
TCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATG
TTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATT
CTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCAT
ATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTc
atcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAG
TAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTAT
CTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACT
TCACTATACCATACACCtcctcacagacccactgggactccttcccactg
gaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAATTT
GTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCA
TGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaattt
aaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcag
tccgttatttttacccccactggctgaaaaaatcccacccccttctcaca
cacccgagaagggggtgtatcatttAATACCGATTCTTCATATCTCACGG
CTTAAAGAGCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCCTTG
CANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAA
ACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCT
AATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAA
AGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAA
CCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGT
TAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCAT
AAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACT
CAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACA
TTCTAACTTCACTATACCATACACCtcctcacagacccactgggactcct
tcccactggaaaaattggcctaaATATCGTCcctagtggaaaattataca
ctTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTAC
TTATATCATGCTATTTTCTatcctcactgaattttctgacttaaaaacaa
tggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACg
aatttcagtccgttatttttacccccactggctgaaaaaatcccaccggg
tgtgtgagaagggggtgtatcatttAATACCGATTCTTCATATCTCACGG
CTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCCTTG
CAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAAGG
AATAAGTTAtttgatatttcaattttagtttaaaCCACGACTCTCATTTT
ACAAACTCTTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCGAAA
TACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGG
CGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGAC
GTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCAT
GGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTGT
CTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACACC
CATGAGGACAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGACTT
CAAAAGTTATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTGTT
TTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCTAT
AGTTAGATCTATTTATCAAGCTTTGTATCATTtggtttttatcattttat
tttacattcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGCAA
CGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATC
AgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaac
aacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAA
ACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGC
TGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACAT
CCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTC
ACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCT
TGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTAC
CAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCTTG
TGTCTCTACTAAGATTTTCTCATCTAAgattttctctatttttcgCTTCT
AGAATAGTTCCTCTGTTCCACATCCAAAATCTTATACAACATAACCAGTA
AACTCTCTTTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAGTA
AGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCTTA
AGGGGTCAGAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTATG
AAGAGATGCTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAATCCT
TACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAAC
CAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGC
TAACAACAGCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTTTT
TTAATTCCAATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAGAT
TACTTCTGATTGACACGACCATTCTCAAACCGCTCAACTCGTAATACAAA
TGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTT
TGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAA
CTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCC
TGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAG
CAGGTGCCACTGGGCAAATCATGCTGCAGGTACATgatcaaatctttttt
gttggaataataatattttgcaaaaagtATCAAGTTATTGACTCTAGTTG
GTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAATAG
TGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCA
TCCAATACcttacttatttttcaaagtattgtaattttaaagcttaaaag
tatttgttgtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCACT
CTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTG
GTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAG
GGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACC
ATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTT
CCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATG
ATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATT
CAGATAAAtcgtaatttgaaatttgaaaactcTGTGATAAAATGGGATTT
CTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCATCTC
TTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGTAG
TAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAAC
TGGTCAGAATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGTAT
TCATCCAAGGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAATA
CAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATT
GTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGG
TCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGG
TCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGT
CCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaatctt
ttttgttggaataacaatattttgcaaaatgtaTCAAGTTATTGACTCTA
GTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTTTA
ATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTAT
GTCATCCAATACcttacttatttttcaaagtattgtaattttaaagctta
aagctatttgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTGTA
CCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAAT
TCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGG
TTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAA
GCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGG
TGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTG
TCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTT
TTATTCAGATAAatcgtaatttttgaaatttgaaaactcTGTGATAAAAT
GGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTA
CCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTAAC
TCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGT
CAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCAT
CCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAAAT
AACAGTTGACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCTAT
TTAGTACTCTACTTTTTAATGTATTTTATAAATattatttgctttttctc
ataagGTACACCATAATATACACTGGTAGCGTTTTTCCAATTTATTACCA
ACGAATTTCTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTAAG
ATATATACTTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTGTG
ATTGTAGTTCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTATT
CAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTCAA
GCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATT
GATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTC
AAATACAAAAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATAAT
AGTACCGGAGCTTtttgtatttgtatttttttgtaatgaaactttatcaa
atgcaaacttaaaatttacttttaagATTTACAATATTAGACCCTGTTAG
ATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAACAC
TTATTATTCTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAGCT
GGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAA
CTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAAT
TCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCT
TCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTAC
TAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTC
ACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGT
GTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTC
ACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGC
ATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgca
GGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCT
TCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTA
CTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTA
ggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055402-exon-scaffold_253-1491911889:682806..682888TCONS_00055402-exon-scaffold_253-1491911889:682806..682888Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:682806..682888TCONS_00055402-exon-scaffold_253-1510915933:682806..682888Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:682806..682888TCONS_00055402-exon-scaffold_253-1575043694:682806..682888Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:682991..683046TCONS_00055402-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:682991..683046TCONS_00055402-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:682991..683046TCONS_00055402-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:683348..683414TCONS_00055402-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:683348..683414TCONS_00055402-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:683348..683414TCONS_00055402-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:683657..683812TCONS_00055402-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:683657..683812TCONS_00055402-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:683657..683812TCONS_00055402-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:686292..686366TCONS_00055402-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:686292..686366TCONS_00055402-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:686292..686366TCONS_00055402-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:687052..687159TCONS_00055402-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:687052..687159TCONS_00055402-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:687052..687159TCONS_00055402-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:687348..687538TCONS_00055402-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:687348..687538TCONS_00055402-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:687348..687538TCONS_00055402-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:688523..688733TCONS_00055402-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:688523..688733TCONS_00055402-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:688523..688733TCONS_00055402-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:689270..689499TCONS_00055402-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:689270..689499TCONS_00055402-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:689270..689499TCONS_00055402-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:689775..690220TCONS_00055402-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:689775..690220TCONS_00055402-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:689775..690220TCONS_00055402-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:690548..690675TCONS_00055402-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:690548..690675TCONS_00055402-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:690548..690675TCONS_00055402-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:690864..691034TCONS_00055402-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:690864..691034TCONS_00055402-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:690864..691034TCONS_00055402-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:691283..691571TCONS_00055402-exon-scaffold_253-1491911889:691283..691571Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:691283..691571TCONS_00055402-exon-scaffold_253-1510915933:691283..691571Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:691283..691571TCONS_00055402-exon-scaffold_253-1575043694:691283..691571Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:692889..692983TCONS_00055402-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:692889..692983TCONS_00055402-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:692889..692983TCONS_00055402-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:693341..693470TCONS_00055402-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:693341..693470TCONS_00055402-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:693341..693470TCONS_00055402-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1491911889:693689..694328TCONS_00055402-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1510915933:693689..694328TCONS_00055402-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055402-exon-scaffold_253-1575043694:693689..694328TCONS_00055402-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682806..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102208	0.317008	0	0.0201491	0.15865	0.249057	0.0133267	2.1538	5.02176	8.08725	4.21538	4.15799	2.76036	5.51909	2.09691	3.23439	1.34113	4.26979	0.995805	1.59825	1.84513	1.19486	3.23287	4.38125	2.2254	1.36045e-06	1.44874	0.581836	5.38268	3.31684
Blast
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BLAST of TCONS_00055402 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.766e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 3 
Query:  138 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1268
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.766e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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