TCONS_00055394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055394
Unique NameTCONS_00055394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055394 ID=TCONS_00055394|Name=TCONS_00055394|organism=Clytia hemisphaerica|type=transcript|length=2967bp
ttatcaACAGTTGATGCACTTGGATCTTCTGAAATCACTATTTGAGCGAC
TTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGAT
TTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCT
TGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGa
tgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTAT
GAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCT
CCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGATGGCT
GTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACTTT
GATACCACCTACATTTTATTAAAACCAACCTCACAGACCATTGTTCGTGA
TGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCA
AACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGAT
CCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAA
TAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTCACAGC
CCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGT
TTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAA
TTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAAC
AAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCTCACAT
GCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGAA
AATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATT
ATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGC
GATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAA
AGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGCGCAAC
GCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCA
gtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaaca
acaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAA
CACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCT
GCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATC
CACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCA
CTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTT
GCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACC
AATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAACCTTC
AACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGA
GCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCTGTATC
GGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTA
TCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATA
GCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCA
AATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCA
GAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCT
TCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGAT
ACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTC
TTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAA
GGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCC
AGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGC
AAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTT
GTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGG
CCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTC
AAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCTGGACGC
ACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGAT
CCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTA
CTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAA
CCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACC
TTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCT
GTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTG
TTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTA
CTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACAT
AGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTT
GTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCT
ATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTG
ACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatat
tcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682248..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055394 ID=TCONS_00055394|Name=TCONS_00055394|organism=Clytia hemisphaerica|type=transcript|length=12081bp|location=Sequence derived from alignment at scaffold_253:682248..694328+ (Clytia hemisphaerica)
ttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTACAGT
ATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTTTCC
CTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATG
GTGAAAGATAtgccagattttgaaaaacctNTGTGCTGTATAACGACATT
ATAATTTCCTTAAAGCTTTTTTGTATGAAACTTTGACTCTTCGCTCCACG
AAAGCTTTAACCTTCAAAATTGAAGTAATTTACTCAAAAAAGAATCCTAT
TTCTAGAAAATACAGTTTATTTtgtaatatatataatatagtGGTAGTAT
ACGATAGCAATAATATTGTGATAATTGTAATGATTTCTATTATAtaagtt
tttatttatgatatttAGTAATCCCAACTTTAGTTTAATATTATCTtatg
atttttcagaaatacatttttcaaaatttttttttgtaacctAAAGTTGA
TTCTTCAGCTAGTTTCTTTGTCAATAAAAGTCGTAAACTAACCGTCTTGT
ATTTCATCTTAGAATCTGATAGAATACAATAATGacaatataaaataaac
aaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTA
TTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAAT
TCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCAT
TCAATATGATGGTGAAAGATAtgccagattttgaaaaacctgCCTTGAAG
TGAGTATAataacataaaaaaatattttgattgtgTTATTAACTATGCTA
CAAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAACCTCTGtta
gaaagaaaaaatcagtcccatttattgactttttaaaatttttatacaaa
tttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGG
AGATGGTtgggaaaaagatttttgatgggaattcattttggcaatttttg
gtcaaaaatctTCATTAGATATTCTCATTAAAATCACATTATTCATATAG
GAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGC
AACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCT
CCATAGTATATGGGTTGATATCAAAATATCCCATCATGTTTTATTCCACC
ATGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTTATAAGAATGAAA
GTGCACTTTTTccaatctttttgaaatatgataaacAATAGATATTACAT
TGAACAACTACTGAAATTCAGTATGAAATAATATTGAaacacttttattt
ttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAA
GGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATG
GATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTAT
AAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGG
GGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGC
TAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAA
TTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACAT
TGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGT
CAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAA
TTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGT
TTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGA
AGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAAT
TTTAGATGATCgtgctattcatgatattataccaccctaaATATTTTCCC
AAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttC
TTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAA
TAAGCTCTAGtctagacggccgactttctgtcctgcctattctaattgtt
agtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttgg
aaaagattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcatt
gactttagacagcccactttattaagcccactttaattcacaattagaat
aggcagggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTT
TGttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAA
ATCCTATCAccaaatttttgcttttcaACTGCCTTCAGAACTCtcatttt
ttcattgtttattactttttgataaaattttatacTACAGAAAATTAAAT
ATATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGT
TGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAA
GAAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACC
TCACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGA
ACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagatttta
ttttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACT
ATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCT
TTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATG
GAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGC
AACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAAC
AAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTA
AACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAA
TGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACAT
GAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATT
ATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTA
CTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGA
AGCTGTTAGATTTCATCAAACAAAACAAANgaaaaatataaaaatacttc
TGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATT
TACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATAAGAATG
AAAGTGCACTTTTTccaatctttttgaaatatgataaacAATAGATATTA
CATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaacactttta
tttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGT
CAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTG
ATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACG
TATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTA
AGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTT
TGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATG
AAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTA
CATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCA
TGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGT
GAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGA
TGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAA
CGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCA
AATTTTAGATGATCgtgctattcatgatattataccaccctaaATATTTT
CCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccactt
ttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAA
GAATAAGCTCTAGtctagacggccgactttctgtcctgcctattctaatt
gttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgct
tggaaaagattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgc
attgactttagacagcccactttattaagcccactttaattcacaattag
aataggcagggcgaaaagtgggccgtctaaactagagctaacaTCCACCT
GTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACT
GAAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACTCtcatt
ttttcattgtttattactttttgataaGATTTTATACTACAGAAAATTAA
ATATATTCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTTTCCATGA
ATAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATT
ACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAA
CCAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAAC
TCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttattttca
ttgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTT
AGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAG
ACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAA
CGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAA
GACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATA
CAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACC
AATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAA
ACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCT
AATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAA
AGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAA
CCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGT
TAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCAT
AAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACT
CAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACA
TTCTAACTTCACTATACCATACACCtcctcacagacccactgggactcct
tcccactggaaaaattggcctaaATATCGTCcctagtggaaaattataca
ctTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTAC
TTATATCATGCTATTTTCTatcctcactgaattttctgacttaaaaacaa
tggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACg
aatttcagtccgttatttttacccccactggctgaaaaaatcccaccccc
ttctcacacacccgagaagggggtgtatcatttAATACCGATTCTTCATA
TCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACTAACAGTG
ACTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGC
AATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAAC
ATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTA
TTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCC
TACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTT
GAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATT
CTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAA
AGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTT
TTTATACATTCTAACTTCACTATACCATACACCtcctcacagacccactg
ggactccttcccactggaaaaattggcctaaATATCGTCcctagtggaaa
attatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATC
CCCACTACTTATATCATGCTATTTTCTatcctcactgaattttctgactt
aaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGAT
CCCCAACgaatttcagtccgttatttttacccccactggctgaaaaaatc
ccaccgggtgtgtgagaagggggtgtatcatttAATACCGATTCTTCATA
TCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTAACAATG
ACTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGG
TCGAAAGGAATAAGTTAtttgatatttcaattttagtttaaaCCACGACT
CTCATTTTACAAACTCTTTTAGGTAACCTCACATGCAAAACTGATGGAAC
TACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATT
TTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCAT
CCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGG
AAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGC
AGGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAG
AAAACACCCATGAGGACAGATAGTCTAGAATATGTCAACTCAAATGCTGT
CTTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGACCTGACA
GATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTC
AATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCATTtggtttttat
cattttattttacattcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCA
CAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGT
CGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaa
tcaacaacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAAC
AAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTA
CAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGT
TCCGACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATC
GCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACA
TACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAA
TGTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATAT
CTTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgattttctctatttt
tcgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTATACAACAT
AACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAACTCAAAC
GCCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCA
ATACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAATAATGTGC
GAGTTATGAAGAGATGCTTTAACATTCAATTTAATTATTCAATCTTCTAG
GGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCA
ACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAA
TGCACAGCTAACAACAGCTTACATCCAAGTAACTTCTCATAAATTGATTC
TTCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTTGAGCACC
ATCTAGATTACTTCTGATTGACACGACCATTCTCAAACCGCTCAACTCGT
AATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAA
TATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCAC
ATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGT
TTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAAT
ACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACATgatcaaa
tcttttttgttggaataataatattttgcaaaaagtATCAAGTTATTGAC
TCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTC
TTTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATT
GTATGTCATCCAATACcttacttatttttcaaagtattgtaattttaaag
cttaaaagtatttgttgtttttgtaaacTTTCCAGGTACCAGGCAATCTT
GTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACA
AATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCA
TGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAAC
CAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCA
AGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAA
CTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCC
TTTTTATTCAGATAAAtcgtaatttgaaatttgaaaactcTGTGATAAAA
TGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTT
ACCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAATATCCA
ACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAA
CATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGCAAGGTCA
ACCTGTATTCATCCAAGGTCAACCGAANGACCATTCTAAAACCGCTCAAC
TCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGA
TAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACT
TCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGT
CAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAA
CAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACatcat
caaatcttttttgttggaataacaatattttgcaaaatgtaTCAAGTTAT
TGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCA
TTTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTA
AATTGTATGTCATCCAATACcttacttatttttcaaagtattgtaatttt
aaagcttaaagctatttgttgtttttgtaaacTTTTCCAGGTACCAGGCA
ATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAG
GGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCA
AGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATAC
CTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATC
ATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGG
ACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGT
GCTCCTTTTTATTCAGATAAatcgtaatttttgaaatttgaaaactcTGT
GATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATA
AGCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCC
GTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATC
AAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCT
GTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTATTCAAC
ATTTAAATAACAGTTGACAGTTTCAAATGATTAATATGGTGAAAATATTA
GTAGCTATTTAGTACTCTACTTTTTAATGTATTTTATAAATattatttgc
tttttctcataagGTACACCATAATATACACTGGTAGCGTTTTTCCAATT
TATTACCAACGAATTTCTTTTACTGTACACTTGTATGATAAAAAAGGCGT
CGAGTAAGATATATACTTCGGTAATGTCAAGACGAAGCTTCATTGCATAT
TGTTTGTGATTGTAGTTCATGACGAAATTATAGCCATTGTCGGAGTTCAA
TCACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTC
AAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAA
GTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAAT
CGTCCCTCAAATACAAAAACAAGGTATAACTCGCCCATTTTCATCTTTCT
ATAATAATAGTACCGGAGCTTtttgtatttgtatttttttgtaatgaaac
tttatcaaatgcaaacttaaaatttacttttaagATTTACAATATTAGAC
CCTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTAC
AAAAACACTTATTATTCTTGATATTATTCTTATTTCAGCAGTAATTACAA
GTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCA
CAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCAT
CGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTA
AAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCT
GCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTT
TCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGAT
CTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGC
AAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaattttta
agtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaaacatttttt
ctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACC
AAATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTT
TTTAACTACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAA
TAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055394-exon-scaffold_253-1491911889:682248..682277TCONS_00055394-exon-scaffold_253-1491911889:682248..682277Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:682248..682277TCONS_00055394-exon-scaffold_253-1510915933:682248..682277Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:682248..682277TCONS_00055394-exon-scaffold_253-1575043694:682248..682277Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:683348..683414TCONS_00055394-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:683348..683414TCONS_00055394-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:683348..683414TCONS_00055394-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:683657..683812TCONS_00055394-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:683657..683812TCONS_00055394-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:683657..683812TCONS_00055394-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:684089..684163TCONS_00055394-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:684089..684163TCONS_00055394-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:684089..684163TCONS_00055394-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:684846..684953TCONS_00055394-exon-scaffold_253-1491911889:684846..684953Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:684846..684953TCONS_00055394-exon-scaffold_253-1510915933:684846..684953Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:684846..684953TCONS_00055394-exon-scaffold_253-1575043694:684846..684953Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:685154..685344TCONS_00055394-exon-scaffold_253-1491911889:685154..685344Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:685154..685344TCONS_00055394-exon-scaffold_253-1510915933:685154..685344Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:685154..685344TCONS_00055394-exon-scaffold_253-1575043694:685154..685344Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:688523..688733TCONS_00055394-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:688523..688733TCONS_00055394-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:688523..688733TCONS_00055394-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:689270..689499TCONS_00055394-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:689270..689499TCONS_00055394-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:689270..689499TCONS_00055394-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:689775..690220TCONS_00055394-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:689775..690220TCONS_00055394-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:689775..690220TCONS_00055394-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:690548..690675TCONS_00055394-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:690548..690675TCONS_00055394-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:690548..690675TCONS_00055394-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:690864..691034TCONS_00055394-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:690864..691034TCONS_00055394-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:690864..691034TCONS_00055394-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:692388..692676TCONS_00055394-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:692388..692676TCONS_00055394-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:692388..692676TCONS_00055394-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:692889..692983TCONS_00055394-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:692889..692983TCONS_00055394-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:692889..692983TCONS_00055394-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:693341..693470TCONS_00055394-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:693341..693470TCONS_00055394-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:693341..693470TCONS_00055394-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1491911889:693689..694328TCONS_00055394-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1510915933:693689..694328TCONS_00055394-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055394-exon-scaffold_253-1575043694:693689..694328TCONS_00055394-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682248..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.000616392	0.00343414	0.221569	0.00292939	0.00457247	0.0783092	0.407102	0.020745	0.000775473	0	1.5398e-06	7.96297e-07	0	0	0	0	0.989972	0	1.00516e-08	8.32903e-08	1.26156	0.370953	0.000893288	0.232607	1.38017e-08	0
Blast
[Close]
BLAST of TCONS_00055394 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 2.278e-80
Identity = 155/392 (39.54%), Postives = 243/392 (61.99%), Query Frame = 2 
Query:   32 KSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1159
            KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   34 KSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H2.278e-8039.54Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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