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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055362 ID=TCONS_00055362|Name=TCONS_00055362|organism=Clytia hemisphaerica|type=transcript|length=2138bp
gaaagaaagagGAGAGAAAATTTATCGTACCACTATTTAGTAGTGTGGAG
ATTGAATCATTCGGAAGTCATAAGGAGGAAGGATAAGAACACGAATAGTA
GTTGTAGAGCGATTCACATTGCATCCAGTTGATCTTTACGATGGCTGTTC
AAAAGATGAAGCAGTGTTACAACCTTACCATCTCATCAATGTAGAAAACA
ATACCTTTCTCCATCTTCTTTTCAACACACCGCTTTTCTTGATCACCCAA
CTTTACACCATCCTTCATCTACCTTCAACTGTGACACAAACACACTTTGT
AATGTCCGACATTGCGACATGTCCTGTTTATCAAACTGCTCTACATTTCT
CTCGAAATCTAGCAACAGCAAGGACATACATATGGAACACTTTAGCAATT
TTGAGTCGTGGACCGTTCGGTTATCTCAGCGAGACACACGTTTTGGATTT
CCTTATACTGACTTTCTATGTTATGACGGACATTCTATATGCTTTTTGCA
CGGACACTAATGCAAGGAAGCTTGATGTAAATgtaaataatgatgaaaat
aataataatgtgaATAGTGTACATATAACTGCTGCAAGTAGACACCACAA
GAAATTAAGTACTGTAAATATTTATGTAAATAATCGCAAACAGGATTTAA
GTTATTCAGAGTTTATCGAACGAATCAAGATTGTATATAAACGTCAAAGG
ttatcTCGTCGACCTACCATCAAAGAGTtacgaaagaagaaaattatcgG
TTTTAACGAATATGTCGAGGTTTTCGAAGTCCAAGAATACGATCGAAGAG
CTGACAAACCATGGACACGTCTGACACCCAAAGATAAAGCTTCCATCCGT
AAAGAATTGAACGAATACAAAGAGTATGAAATGGATGTTCACGAAGAAAG
CAAAATTTATACTAGGTTTCATCGGCCATAACACAACATTTGAACTTCCA
AACTGGTACACGTGTCATTTAAAATGATGGTTGCTCGTGTGTTTGGTATC
ATCGGTGAATAGAGGAATTGTTAACGACCGTTCCACTATTTACCCCCAAA
CCCAAATCATAACATACTTATCAATCCACCTGTCAACAACCGTTGTTATT
TAGTAACGTGATATAAATATTATatttaaatgaaacttttttGCACAAAT
GTAAAACGAAAGCCAGATGGATTATTCTCAAATGCATAGTTGTAATGCAT
GATGGTCCGGAAAGGGGGTTGCTGTCAACCCAAAATGCTGTTTGTCCTAC
CATCGAATGATGCGAATGTGCAGTTATGATAATATTAGCGCCTGATGTTT
TAGCAGATATTGGaataaaagattatttttgtattgaatttcaagaactt
taaaaagtaaaagttaaaataCGAGTTACTTTGCTCTGTTAGTAAGTTCA
AATGGATGCTGTTGTCTATTGACTGTCAGACGGTACCTTAATTATAACTC
TGAAATGACTGACCCTTATGCTTTTACTTTATAAATGGGTTATATTGTTC
GCCtttattattttcttaaatTATTTTACATCAAGCTTCATCCTACCTGA
AAGATATCTTtaacatttaaaatttaaaacttcCTATACATAATGTAATT
CCACTATGAATATGTTTTGGCCTTTCCTTGAGATAAGAGTTTTCTGTGCC
ACTATCGTTCAGTGTTAGTATTTGACCTGTTTTGGTGCTAGCTCGTCGAT
TTATGGTTTACGGATTTTAAAAGTTGGCCAATTTTATTGTGCAATCATTT
GTTTAAACCGTTGTAACATagtttgaactttttttaaaaaaataaatact
ttgttcttttttgcATGTAAAATTACTTTTTGACCAGTATTTTATTATAC
TATAAAGACTGGAAGAGATTTTTTGTACCTTTTACTCAACGAAATCACTA
TACCATTACGAGTGTCTTTTCATCGATTACGGCATGGACAACATTTGACT
CCCTTTCTTGCGAAGTAATCTACGACAATTTATTACTAAAGGAATCCATA
TCGAATGTNCATTTGACTCCCTTTCTTGCAAAGTAATCTACGACAATTTA
TTACTAAAGGAATCCATATCGAATGTTTTGTTCCTCAAGTCATCTTTGAA
AAGGGGCATTCCATTTTTGTTCCGTAATCAATGAAAAG Run BLAST on NCBI transcript from alignment at scaffold_253:662205..666387+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055362 ID=TCONS_00055362|Name=TCONS_00055362|organism=Clytia hemisphaerica|type=transcript|length=4183bp|location=Sequence derived from alignment at scaffold_253:662205..666387+ (Clytia hemisphaerica)
gaaagaaagagGAGAGAAAATTTATCGTACCACTATTTAGTAGTGTGGAG
ATTGAATCATTCGGAAGTCATAAGGAGGAAGGATAAGAACACGAATAGTA
GTTGTAGAGCGATTCACATTGCATCCAGTTGATCTTTACGATGGCTGTTC
AAAAGATGAAGCAGTGTTACAACCTTACCATCTCATCAATGTAGAAAACA
ATACCTTTCTCCATCTTCTTTTCAACACACCGCTTTTCTTGATCACCCAA
CTTTACACCATCCTTCATCTACCTTCAACTGTGACACAAACACACTTTGT
AATGTCCGACATTGCGACATGTCCTGTTTATCAAACTGCTCTACATTTCT
CTCGAAATCTAGCAACAGCAAGGACATACATATGGAACACTTTAGCAATT
TTGAGTCGTGGACCGTTCGGTTATCTCAGCGAGACACACGTTTTGGATTT
CCTTATACTGACTTTCTATGTTATGACGGACATTCTATATGCTTTTTGCA
CGGACACTAATGCAAGGAAGCTTGATGTAAATgtaaataatgatgaaaat
aataataatgtgaATAGTGTACATATAACTGCTGCAAGTAGACACCACAA
GAAATTAAGTACTGTAAATATTTATGTAAATAATCGCAAACAGGATTTAA
GTTATTCAGAGTTTATCGAACGAATCAAGATTGTATATAAACGTCAAAGG
GTGAGTGTTTGCTGCTTTGTTGCTGGTCCGACTTCTATTTTGGGTATTTG
ATTTTGGTATTGTGATACTTTTTAAGAGTTTAGGAGTATTTTGGTCCTGT
TGGTTATTCTAAAGAGTTCCCCTGTATTCTAATACCTGGTTCGCTATTCA
AATCACTATTCGATCtttcatgaaaattgaattttcttttctttcatttt
cagttatcTCGTCGACCTACCATCAAAGAGTtacgaaagaagaaaattat
cgGTTTTAACGAATATGTCGAGGTTTTCGAAGTCCAAGAATACGATCGAA
GGTACTGATTCGTTTTTTCCTATATTACATAAATCGCATTTTGGGAACAT
ACTGTTAATCTCTTTTAATTTTAGCATCTATTCAACAATTTGGTATTTTG
TTGTTTGAAGAATTTTAATGATCCTCACTAATGACCTGCAATTTAAAAGA
ATACCTATTTTGGTGCCGTGTGCAAATAAATCTAACTTCATAAAGACTCC
CTAGCTCTCTCTCTTTTCATTGAGTGATAAGGTTttgatttaagggctct
gaccatagtgaatttttcataattgccgtgtttaaaatgtgttttcagaC
TGatataaccaacaaaactatggcatgttatacattttctgttagaaaaa
ctattcctgaatctgaaaattcaaaaattgcattgaaaaaatttgatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaaggcaattctttgttaaaagtgttaa
ggaacctgaaatataacttttatgttcaaataccaaaatcaacttttgga
ctatggtcagagcccttaaagctttttgattaATCTTTTTTATCCCACTT
TTCCTCTATTCCGTCTTTCatttaacaaaatcttttaattcaTTAAAATC
AATCTCTCGAACTTCTTTGACTTCACGATCAGTCAGCTTTTTTTGATAGT
GGAACGATTCCCTCAACTTTATTCCCAGGCTCTTTCCTCTTTCTGAGTAA
AGCTTTTCTGAGTCAGGTTGCTAAGCGATTGTAATTCTATCATTTGCGAA
ACAGACTGTCTGAAACCATGTTTTGAATGTTAGCACGATTTCCAATCGTT
TGATAGGGCGATATATTTTAATAGCATCTATGTgccaatatttaaaaaaa
taactatCAATGATAAAACTATGACATTTATGTCTACCCTCTATTTGCCC
TTTCGCTATGTATGAGTTTGCCCACTGTCTTGAATCGATTTCTTTCCCCA
TCTGGTTGAATCATTATACTATAACCCTGAAAACGTTGCATTTCAACACT
TTGACTATCTTTCTCTCTTGTACAGAGCTGACAAACCATGGACACGTCTG
ACACCCAAAGATAAAGCTTCCATCCGTAAAGAATTGAACGAATACAAAGA
GTATGAAATGGATGTTCACGAAGAAAGCAAAATTTATACTAGGTAACAAT
CTTCCCTTGCTTTGTGTCCACTTCCTTCAATGCTCAAGGGTTCAGTCAAC
CCTAATTAGAAGGgaattcttggtcccttgaaNCTTTGTGTCCACCTTCT
TCAATGTTTAAGggtacagtcaactctctctcttattcgaagtTTTCTGT
GATTCGAACCAAAACATTGGTCCCCTCAAGTgaaaaattgtataaaaaaC
TATCCtaattcaaatctctctaattcgaagggAATTCTTGGTAGAATTGG
TAGGGAATTCTTGGATCGAATTAGACAGGGTCAACTGTATTTGTAATGTT
CCCCATTAATGAAAGCAAATATTTTTAATGAGGCTACGAAAAAAATCTTT
CGACAGCTTAAAGATTACTTTCACGAAGGGTTCCATACTGTATTATTTGT
CAGTTCCATGGCTAGGGACAACAGTTTTTGATTGaacattttctcttttt
tttgcttCAGGTTTCATCGGCCATAACACAACATTTGAACTTCCAAACTG
GTACACGTGTCATTTAAAATGATGGTTGCTCGTGTGTTTGGTATCATCGG
TGAATAGAGGAATTGTTAACGACCGTTCCACTATTTACCCCCAAACCCAA
ATCATAACATACTTATCAATCCACCTGTCAACAACCGTTGTTATTTAGTA
ACGTGATATAAATATTATatttaaatgaaacttttttGCACAAATGTAAA
ACGAAAGCCAGATGGATTATTCTCAAATGCATAGTTGTAATGCATGATGG
TCCGGAAAGGGGGTTGCTGTCAACCCAAAATGCTGTTTGTCCTACCATCG
AATGATGCGAATGTGCAGTTATGATAATATTAGCGCCTGATGTTTTAGCA
GATATTGGaataaaagattatttttgtattgaatttcaagaactttaaaa
agtaaaagttaaaataCGAGTTACTTTGCTCTGTTAGTAAGTTCAAATGG
ATGCTGTTGTCTATTGACTGTCAGACGGTACCTTAATTATAACTCTGAAA
TGACTGACCCTTATGCTTTTACTTTATAAATGGGTTATATTGTTCGCCtt
tattattttcttaaatTATTTTACATCAAGCTTCATCCTACCTGAAAGAT
ATCTTtaacatttaaaatttaaaacttcCTATACATAATGTAATTCCACT
ATGAATATGTTTTGGCCTTTCCTTGAGATAAGAGTTTTCTGTGCCACTAT
CGTTCAGTGTTAGTATTTGACCTGTTTTGGTGCTAGCTCGTCGATTTATG
GTTTACGGATTTTAAAAGTTGGCCAATTTTATTGTGCAATCATTTGTTTA
AACCGTTGTAACATagtttgaactttttttaaaaaaataaatactttgtt
cttttttgcATGTAAAATTACTTTTTGACCAGTATTTTATTATACTATAA
AGACTGGAAGAGATTTTTTGTACCTTTTACTCAACGAAATCACTATACCA
TTACGAGTGTCTTTTCATCGATTACGGCATGGACAACATTTGACTCCCTT
TCTTGCGAAGTAATCTACGACAATTTATTACTAAAGGAATCCATATCGAA
TGTNCATTTGACTCCCTTTCTTGCAAAGTAATCTACGACAATTTATTACT
AAAGGAATCCATATCGAATGTTTTGTTCCTCAAGTCATCTTTGAAAAGGG
GCATTCCATTTTTGTTCCGTAATCAATGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055362-exon-scaffold_253-1491911889:662205..662904 | TCONS_00055362-exon-scaffold_253-1491911889:662205..662904 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1510915933:662205..662904 | TCONS_00055362-exon-scaffold_253-1510915933:662205..662904 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1575043694:662205..662904 | TCONS_00055362-exon-scaffold_253-1575043694:662205..662904 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1491911889:663108..663205 | TCONS_00055362-exon-scaffold_253-1491911889:663108..663205 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1510915933:663108..663205 | TCONS_00055362-exon-scaffold_253-1510915933:663108..663205 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1575043694:663108..663205 | TCONS_00055362-exon-scaffold_253-1575043694:663108..663205 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1491911889:664580..664696 | TCONS_00055362-exon-scaffold_253-1491911889:664580..664696 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1510915933:664580..664696 | TCONS_00055362-exon-scaffold_253-1510915933:664580..664696 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1575043694:664580..664696 | TCONS_00055362-exon-scaffold_253-1575043694:664580..664696 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1491911889:665165..666387 | TCONS_00055362-exon-scaffold_253-1491911889:665165..666387 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1510915933:665165..666387 | TCONS_00055362-exon-scaffold_253-1510915933:665165..666387 | Clytia hemisphaerica | exon |
| TCONS_00055362-exon-scaffold_253-1575043694:665165..666387 | TCONS_00055362-exon-scaffold_253-1575043694:665165..666387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:662205..666387 + |
Blast
BLAST of TCONS_00055362 vs. Swiss-Prot (Human)
Match: PHAR4 (Phosphatase and actin regulator 4 OS=Homo sapiens GN=PHACTR4 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.810e-28 Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 2
Query: 695 QRLSRRPTIKELRKKKIIGFNEYVEVFEVQEYDRRADKPWTRLTPKDKASIRKELNEYKEYEMDVHEESKIYTRFHRP 928
++LS+RPT+ EL +KI+ FNEYVEV + Q+YDRRADKPWT+LTP DKA+IRKELNE+K EM+VHEESK +TR+HRP
Sbjct: 625 RKLSQRPTVAELLARKILRFNEYVEVTDAQDYDRRADKPWTKLTPADKAAIRKELNEFKSSEMEVHEESKHFTRYHRP 702
The following BLAST results are available for this feature:
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