TCONS_00055359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055359
Unique NameTCONS_00055359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1977

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055359 ID=TCONS_00055359|Name=TCONS_00055359|organism=Clytia hemisphaerica|type=transcript|length=1977bp
gatttattcaaaatatccTTTTTGCTATTTTGCTGATATTTAGTTGttat
tttctaaagaaaactatgagagaaatattgaaaaaggaAAACTGAGATTC
atggaaaaattcgaataattacATAATGTGAGTTTGCAGTCCAAACAAAC
TCATTTTGCAGCATTGTGTAGTTGTTTTTTGTTAGTCTTGGGGAGAATTG
CCATTCAAGgcttcagttaacaatatgtTGGAGCTTTTTCAAAGTTGGTT
TGAAGAAATACCAAGACTGGCATCGAAAGTGAAGCGTTCAGATAGTTTAG
CCTTGAAACTTGGTGCCCGACCGTCAAGATCTGAACTTGAGGGCAAAAAT
ATCATCCCAACACAATCGGACGATGAAAAACTAGCATTACGTTCGAAAGT
CGGGACCAATCTCGTCAGACGGCTAAGCCAGCGTCCATCAAAAGAAGAGT
TGGAACAAAGAAACATTTACCGCACCACCACAGACGAGGAGACACACCAA
AAGAACTTGGAAGAAACCAAACGACAACTCTCTAGAAAGttatcTCGTCG
ACCTACCATCAAAGAGTtacgaaagaagaaaattatcgGTTTTAACGAAT
ATGTCGAGGTTTTCGAAGTCCAAGAATACGATCGAAGAGCTGACAAACCA
TGGACACGTCTGACACCCAAAGATAAAGCTTCCATCCGTAAAGAATTGAA
CGAATACAAAGAGTATGAAATGGATGTTCACGAAGAAAGCAAAATTTATA
CTAGGTTTCATCGGCCATAACACAACATTTGAACTTCCAAACTGGTACAC
GTGTCATTTAAAATGATGGTTGCTCGTGTGTTTGGTATCATCGGTGAATA
GAGGAATTGTTAACGACCGTTCCACTATTTACCCCCAAACCCAAATCATA
ACATACTTATCAATCCACCTGTCAACAACCGTTGTTATTTAGTAACGTGA
TATAAATATTATatttaaatgaaacttttttGCACAAATGTAAAACGAAA
GCCAGATGGATTATTCTCAAATGCATAGTTGTAATGCATGATGGTCCGGA
AAGGGGGTTGCTGTCAACCCAAAATGCTGTTTGTCCTACCATCGAATGAT
GCGAATGTGCAGTTATGATAATATTAGCGCCTGATGTTTTAGCAGATATT
GGaataaaagattatttttgtattgaatttcaagaactttaaaaagtaaa
agttaaaataCGAGTTACTTTGCTCTGTTAGTAAGTTCAAATGGATGCTG
TTGTCTATTGACTGTCAGACGGTACCTTAATTATAACTCTGAAATGACTG
ACCCTTATGCTTTTACTTTATAAATGGGTTATATTGTTCGCCtttattat
tttcttaaatTATTTTACATCAAGCTTCATCCTACCTGAAAGATATCTTt
aacatttaaaatttaaaacttcCTATACATAATGTAATTCCACTATGAAT
ATGTTTTGGCCTTTCCTTGAGATAAGAGTTTTCTGTGCCACTATCGTTCA
GTGTTAGTATTTGACCTGTTTTGGTGCTAGCTCGTCGATTTATGGTTTAC
GGATTTTAAAAGTTGGCCAATTTTATTGTGCAATCATTTGTTTAAACCGT
TGTAACATagtttgaactttttttaaaaaaataaatactttgttcttttt
tgcATGTAAAATTACTTTTTGACCAGTATTTTATTATACTATAAAGACTG
GAAGAGATTTTTTGTACCTTTTACTCAACGAAATCACTATACCATTACGA
GTGTCTTTTCATCGATTACGGCATGGACAACATTTGACTCCCTTTCTTGC
GAAGTAATCTACGACAATTTATTACTAAAGGAATCCATATCGAATGTNCA
TTTGACTCCCTTTCTTGCAAAGTAATCTACGACAATTTATTACTAAAGGA
ATCCATATCGAATGTTTTGTTCCTCAAGTCATCTTTGAAAAGGGGCATTC
CATTTTTGTTCCGTAATCAATGAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:651978..666387+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055359 ID=TCONS_00055359|Name=TCONS_00055359|organism=Clytia hemisphaerica|type=transcript|length=14410bp|location=Sequence derived from alignment at scaffold_253:651978..666387+ (Clytia hemisphaerica)
gatttattcaaaatatccTTTTTGCTATTTTGCTGATATTTAGTTGttat
tttctaaagaaaactatgagagaaatattgaaaaaggaAAACTGAGATTC
atggaaaaattcgaataattacATAATGTGAGTTTGCAGTCCAAACAAAC
TCATTTTGCAGCATTGTGTAGTTGTTTTTTGTTAGTCTTGGGGAGAATTG
CCATTCAAGgcttcagttaacaatatgtTGGAGCTTTTTCAAAGTTGGTT
TGAAGAAATACCAAGTATGATAGATACCTTTATTGTCCTCTCAAACCTCC
GCCCTTAGAAATACTTTGGGCTAGACCTTATTCTCCAGGGGGACTTAATA
ATTTCTAACCCAAAGTCAGTAGCTTTTAATCAAAGCGAATCGTGATTTGG
AGTAAATCCTTATGCTAACTATTAAGAATAAAATTATTAAATTGATAAAA
CTATCTACCCAAATAATAagtaaaaatttaatattttacaTTAAATTGCC
ACTAAATGATTGATTTATCTTGATTTGAAGCATTTTTCTATCGTTCGATG
GAAGAACAACAGTATATGGAACAAATGTCTTTTCACCTCATACCTATCGA
ATGCTATTGTTCCGTCTGATAATATTTTCTACTATTTCTTAATGTACAGG
ACTGGCATCGAAAGTGAAGCGTTCAGATAGTTTAGCCTTGAAACTTGGTG
CCCGACCGTCAAGATCTGAACTTGAGGGCAAAAATATCATCCCAAGTAAG
TTCTCATTGTCACTTTAAGATCATCATCCCTTCAAATTACCACCAGTCCG
GGATGTGCTTTCTCCGTACGACAAAATATTCTGAGTGATTTCTTAATATC
AAGATATACTACAGATTTTATGCCtcatgcacgttttttataaggaaagt
AGTAGAAGAAGGAAAATGATCCAAAAATAAGGAATCGTTGAGGAACTGCT
CAGtttgagaataagaaaacaagttaaaaGGGACAGTAAGAGTAAACCTT
GAACTTGCACACATTTACAAAAGCCTACTCAAAAACAACATTCGATAAAC
GTCTTTTTCTGTCGAAAACAGAAAACCTACAGAAACAATACTTATACAGA
TGTTACATACTTAGCAAATCCAAACTTAGCAACttagtaaataaggaact
caatAAGGAGGCTGGAATTctctggaaaaataaggaactccaggttCGGG
GCCAAGTTAAAGTtccttataaagaaaacgtgtatcaattttaaaaattt
cctttgtaGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAACTGATA
ATTTCACAATATATCTAGTGAGTAGTTGAATGAGATTCCGCGACGTGTCG
AGCCTCTTTCTCATCTTCGCCCCCTTCTTGTTTTCTTTAGACcgatttat
tcaaaatatccTTTTTGCTATTTTGCTGATATTTAGTTGTTGTTTTCTAA
AGAAAACTATGagagaaatattgaaaaaggaAAACTGAGATTCatggaaa
aattcgaataattacATAATGTGAGTTTGCAGTCCAAACAAACTCATTTT
GCAGCATTGTGTAGTTGTTTTTTGTTAGTCTTGGGGAGAATTGCCATTCA
AGgcttcagttaacaatatgtTGGAGCTTTTTCAAAGTTGGTTTGAAGAA
ATACCAAGTATGATAGATACCTTTATTGTCCTCTCAAACCTCCGCCCTTA
GAAATACTTTGGGCTAGACCTTATTCTCCAGGGGGACTTAATAATTTCTA
ACCCAAAGTCAGTAGCTTTTAATCAAAGCGAATCGTGATTTGGAGTAAAT
CCTTATGCTAACTATTAAGAATAAAATTATTAAATTGATAAAACTATCTA
CCCAAATAATAagtaaaaatttaatattttacaTTAAATTGCCACTAAAT
GATTGATTTATCTTGATTTGAAGCATTTTTCTATCGTTCGATGGAAGAAC
AACAGTATATGGAACAAATGTCTTTTCACCTCATACCTATCGAATGCTAT
TGTTCCGTCTGATAATATTTTCTACTATTTCTTAATGTACAGGACTGGCA
TCGAAAGTGAAGCGTTCAGATAGTTTAGCCTTGAAACTTGGTGCCCGACC
GTCAAGATCTGAACTTGAGGGCAAAAATATCATCCCAAGTAAGTTCTCAT
TGTCACTTTAAGATCATCATCCCTTCAAATTACCACCAGTCCGGGGTGTG
CTTTCTCCGTACGACAAAATATTCTGAGTGATTTCTTAATATCAAGATAT
ACTACAGATTTTATGCCtcatgcacgttttttataaggaaagtAGTAGAA
GAAGGAAAATGATCCAAAAATAAGGAATCGTTGAGGAACTGCTCAGgttg
agaataagaaaacaagttaaaaGGGACAGTAAGAGTAAACCTTGAACTTG
CACACATTTACAAAAGCCTACTCAAAAACAACATTCGATAAACGTCTTTT
TCTGTCGAAAACAGAAAACCTACAGAAACAATACTTATACAGATGTTACA
TACTTAGCAAATCCAAACTTAGCAACttagtaaataaggaactcaatAAG
GGACTtaataaggaactttgaggctggaattctctggaaaaataaggaac
tccaggttCGGGGCCAAGTTAAAGTtccttataaagaaaacgtgtatcaa
tttaaaaaatttcctttgtagAAAGActgaattcttctttttatttgttc
ACTAGCACAATCGGACGATGAAAAACTAGCATTACGTTCGAAAGTCGGGA
CCAATCTCGTCAGGTAAGAAACCTTCCTTGGTTGTAATGTAGTGAATCAC
CTTTTCGTGAAATAGTTAAATAAAGTTCTTGTAAGTGTTTGAACAAATTA
AATAATGCTGGCTAAATTTTACACTTATGGTGGTTATGTTGAACATTTTA
AATATTACATTTCTTTCAAGCGAGAACTTGAAAAGCATGCTAAGAATACC
TCTAGATGGTGtcttttcatttgttttattttccacTTTCAGACGGCTAA
GCCAGCGTCCATCAAAAGAAGAGTTGGAACAAAGAAACATTTACCGCAGT
AAGTCCCCCTTCTTTCTTTTCCGCTTTTCGATGATGCTGTATTCCAGCAG
TTGATGCTCTCGACCAGAAATGACGTCTTTTACCAATTAGTTTAGGTCTA
TACAGTTGGAAGTAAAGATTACCAAATAAGTCTATTAGTAAAAAAGTTgt
gttttggatttttttatattaagtGTACTTAGGACAAAGAACAAATGAAC
GTAAAGTCTGTCCATCTCTTCTGGCGACTGGACGACAGACGAAGATTAGA
CGATAATATTATAAATTTCAATATTATTTCGTAGATGTCAATaaatagac
ctgtgaaatataaagGGATATgatataccgtattacttcgaataaacacc
ccggccttttattaattttttcggACTTAAGGAGAGGCGTTTATTTGAGA
GGGCGTTTATTTAATAATTTATAAACGAGGTCATATTAGTAATGTGAATG
AGCCTTATTTTGTCTTTTCATTATTATTCGAGTACAAATATGTCAGTTTA
AGGATGTAGAAATGGGTCAAAACCAGGTCGAATACAAGAAGAATACGTTA
TTGCTGTATATCTAAGTTTATCTTCATATTATACTTCCTTATTGCTACTT
GTTTTAAATAAACACCCCTCGGAGCTcgtttattcgaagggggcttttat
ttgagggggcgtttattcgaagtaatacggtaagtCTTatcgaattttgg
ccctttaaTCTTGATTACCTAATTAGACAGGTAAACTGAAATAAGCAGTG
GGTCGGAATAAGATTTTCGAgggtgaaaatttttgaaaaggagacAATTG
TAGCATTAGGGTAGGGAGAAAAGAGACTTTGAAACCATCTTGTAGAGGAA
AAGAGCAAATACGGAATAAAAGTGAAAAGGCCTCCTCTTGGAGAGAAAAT
ACCAACGGTATTAACCAAATCAAATGGACTTTGAATCGGAGCAGTCAACA
TGTGTTTCAACATGATCCATTTGGGAGAAACAAGCGCTTGGAAGTTTGTT
TGCTGCTTTAGCTGTATTTTGTTTCCTTCTCTTTGGGTGGATCTTAAAAG
GTGAACTTCACAAATTACTTTTCCCTTTGTGTAAAGTCACTTCGGCTATT
TTTGTGTCATTGTTTCGAAATATGGAGtaatcaatttttaaatattttgg
cgAAATTTATAGGCGGACTTGAGGTcaaatattctaaaattttgTAAACC
TAATTGCGTAATTTCGAAATTGAAATTCCCAAGTGTCCGCCTCGAAGCAT
TATAAATATAACACAAGTCTGGTTGGTAAGGAAATCGAAGCATAACTAAG
GGAAGAAAGTGAATCCATTCAACTTGTGGCTCGACTTCATTTTCGTATCC
AATAACTCCCAATAATAACACTTTATAGAATTTCACATAATAATAAAGAT
TTCTTAACTTTCTTAGATTTCGAATAATAccaaaaatcgataaaaatagG
AACTGCCTTACTTTGAGCAAGTGGAGCAGTGGATTGAACAGAAGTGGTGG
TCTTTTCACTACAATAACTATAATGACACACATGGAATATCAATATTAAA
TATCTCAAATCTGGCAGTAGATTTTTGATTTCTCGTGTCATTTCAAGGAG
AGCGCTATTTAAAATTTCTAACACTTCCTTCTACACTAGCTATTCTTGTC
CTCTTGTAAATTTTGAGAGATTAGCATGGACCAGACTAAATCTTTTCTTT
ACTTTGTCTATTTCGACATTTTCTTGTCATGTCTTGTCAAGAGCACTTTA
TCTTCATATTTTATCATATTGTTGTACGAAATTATATCTAAAACGCAAGG
GTACTCTATTTGAATATGACTTTTTGAGAACTTACCACCATTGTGGGTTG
GTAGTTTAAATTTGCATTTCGATAAGATAAGATAATGCATCTTCTGTAAC
ATTCTTTCTACACTCCAACGTGCCTTTCACTCTGTTTGTATAATATGTTC
GGTTTTAACTGTCGACACTCTATGTTGACACTAAGCAGTATTTGTGATTA
GAGTGAAATTATATTCTTGAACGTGTCAGGTCTTATGAAACGCTCAATAA
ATGTCATTATGATGAAATAACCATTTCCTTCTCGGGGTTTAAAGTCTACT
AAAAAAAACGTGAAATGCTTGAGATCCGAGCTCAGGGTCTGTTTTTGTCT
GTGTATATCTTTTTTGATGCTAAGTACCTAAGCATGACTGTGAGCTATGC
TTTTAGTATCAGCTAATTTCTATCTGTCAAAAGAGCAATGAAGAAAGATT
CATGAataagtgattttttttgtgacatTAAAAGGGTATTGACCAAAGAC
GAATGAAGAATACTTCATGCTCGCTGAATGGTAAACATTGCTCATTCCCT
CAAATATAAAGTATTAAAATATCCTGAATGGACTGATTGATGGAGAAAAA
CCTTCTGAATATTTGATGAAGCTGAAAAGCTGGTCAATTGGTCATGGACA
TTTTTATGGAAGATGATATTGTATGGTGATGTGTCATGTATTTCATTCTA
TCCATTCACGTTCTCCTTCCTTCTCCCATCCCTACTTCATTATGCAttca
gattttctttttttgggaAGTGAAAAAGAAATGTCTTTCGTCATAAGGAT
TGATACACAAATACAGAATGATTTCATTTCGTTAGTTGTTTCTTGACTTG
ATTGTACGCAGGATGACGGAgtcttgtttttattatttcgatgttttatt
tttgagtcttcacattttgtttcttttggtTTATTGTTCAGAAATATGAG
CAACTCCTCCGATCGAATCTATCATTCTGAAAACGAAGccggaaattatt
tttgaacaaGGAACTTGTTATAAAGTGTCTCTGCTTTTTTGTCATACTCA
CAAGGCCCCAATGCCTCAACTCTTAACTCTTTTTCTTTTGCCGTTTTACC
AATTAAGGAGAAAGAAGTGTACAATGTATCGACCACTACCGGCTATCCTT
TCTAGGAAATCACGAATAATGATGTTTTCCATATCCCGTTGTCTAATAAT
TTATAACGGAAGTCGTCAAACAATAATTGAAANTGATGTTTTCCATATCC
CGTTGTCTAATAATTTATAACGGAAGTCATCAAACAATAATTGAAAAACG
AGATGTAGATAAATGATGTCATCTTTCTAAAATTGGTTAACATTACGTAT
TGTTTTGTAATCGAATTTGTGAGATATTAAAGACGTGGTAACATCCTTTT
CTAAACGttcacttttcattttcagcGCTCTCAGTGTCTCCTCAAAACAC
AAATAAAAATACCACATAAAAAATACATAATTGACTTTGTGTGCTTCCAC
CAAGTACACATAAAGAACATTGCACAAATTTCTCCTATGAAGAACTTTAT
GAAGACCACTCGTGACAAATTGGCGACAATGAGTTTATCTGCATACAACA
CGAACCGACTGCGCATGTACAACACAATCTCACTGAAATTGTGGTACTCG
CTTTTCACACCTTTCGCAGGTAATCCCTCAATCCTCGCTCATCCCTACTC
AGACTAAGCATAAGAACCTCTTCCTTGATATTATCACCCTAGTTAGTATT
CAGATTAATATAGACTACGAATTGACACGAGTGTCAGACAGAAGTTCCTG
CTTGGAACAGTTTGTTAATCAGTCAGTTTAATATTGAGTAGCGGTTACAC
ATCCTATATAAAACACACGGATAAGCAGTATCTCTTTTTATAGATTACAT
AATGCGAACCCTGATCTTACGTTTATATTTTTCGTCGGATTCCAGTAATC
GAAATTGCTTTACTGACGCCGTTTAATATCGCCACGCATTTCCTGCGGTT
GAAAATCTAATTATTGACCTCCCTTTCAGTCGACATTAAATTGGGAAAAA
TGCGTTGATAATATTTGCAAAGGTCTGCCTTACCATATGGGAATGTAATT
GGGACAAATGTTAATTTACGATCAAGCAATTTACGATCCAGTAGATTTTT
AATGAagcaatttattttttgaaatcaatcACAGCTAACCATTACGTCAT
CATGACATGGTTCCAGGTGGGCGAACGAACAATCTGAAACTGTTGATACA
TACGTGCGTTTCTTTGACCCCTTTGAAAGTTCAGATACCCACTATAGAAC
GTGGCCTTTATATTCTTCCTTATAATAGCACTCTTACTCAAATGCAACCA
AAAACTACCTGAATTATATCTCTCGTCAAGAAATTTTCTCTAATACTTAC
TACAGATTTAGAACTTTTTGACAGAAAGTTTTTATAGTTATGTAGTGTTA
TTAGCTTTCAGTGGttttttttcaaagcttttatTCGTTTCTTGTCATTG
AACGCTTTGATGTCAACTATGTCTGTGAGTGTCTACAACGCACAAAACAC
TGTTTCAACTCTACTCTTTGCTCACTATGAAATGTATCGCGTGTTTTTGA
ATCGCGTTGTGTTGCCGGTATTGGAGTCGTTAGTGACGTTGAAATTCCTT
CTCCTTATTCTAGCCACCACAGACGAGGAGACACACCAAAAGAACTTGGA
AGAAACCAAACGACAACTCTCTAGAAAGGTGAGGCTTCTTTCTATCCTTG
GTACAGAAAACTATCCAATTAGCAGATAAAATTCTTTTTATCATTCCCTA
CTGGTTTCTGTTAATTGGAGTAAAGTCTTTCAAAAACGGTCGGTAAAATG
GTGGTTACTTATGTGTAAATCAGTTCTATTTGCAGCCCCTATAGCTTTAA
AGTCATTAAGCAAGAATCCACGAGCTAAATTCTTTTGAAGACGGGTTGTT
TACGTTGAAATGGTACTAGTTGTCTCGTTGTCATGGTGCTTTCAAAGTGG
TCTCTGCTTGGTTTGGCATTTATTAAAAAGTGTAAGATATGTAGAGGACC
CTTTGGAAGAAACGTGAGATCTTATTGAGAGTGACTGTAGTAGTAATAGT
TGTTTATCTATCGATGAATACCTTCGCTCTCTCTCTCCGTCGCCTCAAAG
ATTTAGTCCTTCTAATTTTTCCAATCACATGCATAACGGGTATGACAAAC
CTCTCTTCGTTTCAAACACTCACTGTGTGGCCCATGATTGATATAGGTGC
CGATATAGGGTGATGTCTGTTGAAAATATCTTATCCTAACACGTGCGGAA
ATTGAGAAGAGATGCAGCACTTTTGTGGCGACACGGCAGTTTAGGGGTTG
AGTTTGATACGATGCCAGACGGTACTTTCAAACCActtgttgatattttt
aacGAAACCTGTTGACGTTTATGTTCAAAATGACCACCCTTGCTTACGAA
ATGATCTTCACATTTGACCTCCCCTTAGAGCCTTTCTAATCTAGATTAAT
TTCGCTTTCAAGCCACGTGCTTTGAAACCCTGGAATTTTGCTCCAATGAA
AAACTCGTCTAAATAGCTGTCTAATTAGAGTCGGTTAACTTTATTCTTGT
ATGTTCGTTCACTTATATACTCTTAAAATCATTGGCGCATTTGAGGGTAC
AATAGCCAACCCAAATTGAATCATCTCAACAAAAAAGTGTTAACTCGTCG
TGTTTTTTAGAATTTCCTCTGTAACCTGGGTCTGTCTGACATTGACAAAT
GCATACCACGCACTGTGATTGTTTTCTTCCAGTATTTTTACACTgtattt
aaaaagtttatttcGAAATCCGTTTAAAAAGTAGTAATTCAGAGAAAAAG
AAGAGGAAAAAATGCATTGATGAGTGGTCCTATTAGACTTCTATTTTTGC
TGGCGACAGCACTTTCGGTTTACGGTTTGTTAGAAGTTATAAGTATATCC
GGAGTACCGTTTTCTTGTTATaagtaaaaagaaatttgatacTCTTTCAA
GGTTTGCTGAAGGCTTTTTTCTTGTTGAAAGTGTGAAGTGGGACGATTAT
TATGAAAGCNAAAGAAATTTGATACTCTTTCAAGGTTTGCTGAAGGCTTT
TTTCTTGTTGAAAGTGTGAAGTGGGATGATTATTATGAAAGCTTTTCATA
ACACCTACAACTTTTTCGATACGATGTTTAAaataaagtaatttcatttt
gaACTTTTCCTGGACAGGCGCTGTTTTTCAGAAGGCTTTTCCTTTTTGAA
TCctacttattaaaaaaaatgaccCCCTTTCTTATTGAAAAAGAAGTTCG
TCCCATACGCAAAAAGTAAAACGGCTTTTCGTCAAAACACTAATAACCGC
GAAAAGTGAGAAAAATGTAATTGGATCAGTTTACAGTATCACGCTCATTT
GATAAATACAGCAAATCGTAAAAgtaaatagaccttatcggagtttttga
tttttctaaaaaagcgatgtattgtgggattgtttcgagtgtattacaat
agaattccctcgaggaattcctaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaggaattcctaa
gagatttctattgtaatacactcgaaacaatcccaaaatgcatcgctttt
ttagaaaaatcaaaaactccgataaggtctattgataaaaaaattctttc
atcGCGTGATTTTAAAGGAACACTTTTTCAGGAATCCAGTTTCATTAGCT
CCGCAGGAGTAGGAAGATTTCTTTTCACGTTACTTTCAGATAGTAAGAAA
ACACGTAGTGAATTGTCTGTCATTCTTTTGTTGTCTTTGTCAATGAAATC
CTTAACGATCTTCGAAAAGTGACTTTAGTAAGCGAATTCTATTGTCAAAA
GAAACCTCGAATTACAATTAAAAATGTTGTGATGTCATCATGTATGTAAA
CGACATACATATAAAGCGAAAGTAGTGCTTATTGTCAATCAATTGATTTG
AATTACGACTGATATAAAAGgaaaacagaaagaaagagGAGAGAAAATTT
ATCGTACCACTATTTAGTAGTGTGGAGATTGAATCATTCGGAAGTCATAA
GGAGGAAGGATAAGAACACGAATAGTAGTTGTAGAGCGATTCACATTGCA
TCCAGTTGATCTTTACGATGGCTGTTCAAAAGATGAAGCAGTGTTACAAC
CTTACCATCTCATCAATGTAGAAAACAATACCTTTCTCCATCTTCTTTTC
AACACACCGCTTTTCTTGATCACCCAACTTTACACCATCCTTCATCTACC
TTCAACTGTGACACAAACACACTTTGTAATGTCCGACATTGCGACATGTC
CTGTTTATCAAACTGCTCTACATTTCTCTCGAAATCTAGCAACAGCAAGG
ACATACATATGGAACACTTTAGCAATTTTGAGTCGTGGACCGTTCGGTTA
TCTCAGCGAGACACACGTTTTGGATTTCCTTATACTGACTTTCTATGTTA
TGACGGACATTCTATATGCTTTTTGCACGGACACTAATGCAAGGAAGCTT
GATGTAAATgtaaataatgatgaaaataataataatgtgaATAGTGTACA
TATAACTGCTGCAAGTAGACACCACAAGAAATTAAGTACTGTAAATATTT
ATGTAAATAATCGCAAACAGGATTTAAGTTATTCAGAGTTTATCGAACGA
ATCAAGATTGTATATAAACGTCAAAGGGTGAGTGTTTGCTGCTTTGTTGC
TGGTCCGACTTCTATTTTGGGTATTTGATTTTGGTATTGTGATACTTTTT
AAGAGTTTAGGAGTATTTTGGTCCTGTTGGTTATTCTAAAGAGTTCCCCT
GTATTCTAATACCTGGTTCGCTATTCAAATCACTATTCGATCtttcatga
aaattgaattttcttttctttcattttcagttatcTCGTCGACCTACCAT
CAAAGAGTtacgaaagaagaaaattatcgGTTTTAACGAATATGTCGAGG
TTTTCGAAGTCCAAGAATACGATCGAAGGTACTGATTCGTTTTTTCCTAT
ATTACATAAATCGCATTTTGGGAACATACTGTTAATCTCTTTTAATTTTA
GCATCTATTCAACAATTTGGTATTTTGTTGTTTGAAGAATTTTAATGATC
CTCACTAATGACCTGCAATTTAAAAGAATACCTATTTTGGTGCCGTGTGC
AAATAAATCTAACTTCATAAAGACTCCCTAGCTCTCTCTCTTTTCATTGA
GTGATAAGGTTttgatttaagggctctgaccatagtgaatttttcataat
tgccgtgtttaaaatgtgttttcagaCTGatataaccaacaaaactatgg
catgttatacattttctgttagaaaaactattcctgaatctgaaaattca
aaaattgcattgaaaaaatttgatNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
aaggcaattctttgttaaaagtgttaaggaacctgaaatataacttttat
gttcaaataccaaaatcaacttttggactatggtcagagcccttaaagct
ttttgattaATCTTTTTTATCCCACTTTTCCTCTATTCCGTCTTTCattt
aacaaaatcttttaattcaTTAAAATCAATCTCTCGAACTTCTTTGACTT
CACGATCAGTCAGCTTTTTTTGATAGTGGAACGATTCCCTCAACTTTATT
CCCAGGCTCTTTCCTCTTTCTGAGTAAAGCTTTTCTGAGTCAGGTTGCTA
AGCGATTGTAATTCTATCATTTGCGAAACAGACTGTCTGAAACCATGTTT
TGAATGTTAGCACGATTTCCAATCGTTTGATAGGGCGATATATTTTAATA
GCATCTATGTgccaatatttaaaaaaataactatCAATGATAAAACTATG
ACATTTATGTCTACCCTCTATTTGCCCTTTCGCTATGTATGAGTTTGCCC
ACTGTCTTGAATCGATTTCTTTCCCCATCTGGTTGAATCATTATACTATA
ACCCTGAAAACGTTGCATTTCAACACTTTGACTATCTTTCTCTCTTGTAC
AGAGCTGACAAACCATGGACACGTCTGACACCCAAAGATAAAGCTTCCAT
CCGTAAAGAATTGAACGAATACAAAGAGTATGAAATGGATGTTCACGAAG
AAAGCAAAATTTATACTAGGTAACAATCTTCCCTTGCTTTGTGTCCACTT
CCTTCAATGCTCAAGGGTTCAGTCAACCCTAATTAGAAGGgaattcttgg
tcccttgaaNCTTTGTGTCCACCTTCTTCAATGTTTAAGggtacagtcaa
ctctctctcttattcgaagtTTTCTGTGATTCGAACCAAAACATTGGTCC
CCTCAAGTgaaaaattgtataaaaaaCTATCCtaattcaaatctctctaa
ttcgaagggAATTCTTGGTAGAATTGGTAGGGAATTCTTGGATCGAATTA
GACAGGGTCAACTGTATTTGTAATGTTCCCCATTAATGAAAGCAAATATT
TTTAATGAGGCTACGAAAAAAATCTTTCGACAGCTTAAAGATTACTTTCA
CGAAGGGTTCCATACTGTATTATTTGTCAGTTCCATGGCTAGGGACAACA
GTTTTTGATTGaacattttctcttttttttgcttCAGGTTTCATCGGCCA
TAACACAACATTTGAACTTCCAAACTGGTACACGTGTCATTTAAAATGAT
GGTTGCTCGTGTGTTTGGTATCATCGGTGAATAGAGGAATTGTTAACGAC
CGTTCCACTATTTACCCCCAAACCCAAATCATAACATACTTATCAATCCA
CCTGTCAACAACCGTTGTTATTTAGTAACGTGATATAAATATTATattta
aatgaaacttttttGCACAAATGTAAAACGAAAGCCAGATGGATTATTCT
CAAATGCATAGTTGTAATGCATGATGGTCCGGAAAGGGGGTTGCTGTCAA
CCCAAAATGCTGTTTGTCCTACCATCGAATGATGCGAATGTGCAGTTATG
ATAATATTAGCGCCTGATGTTTTAGCAGATATTGGaataaaagattattt
ttgtattgaatttcaagaactttaaaaagtaaaagttaaaataCGAGTTA
CTTTGCTCTGTTAGTAAGTTCAAATGGATGCTGTTGTCTATTGACTGTCA
GACGGTACCTTAATTATAACTCTGAAATGACTGACCCTTATGCTTTTACT
TTATAAATGGGTTATATTGTTCGCCtttattattttcttaaatTATTTTA
CATCAAGCTTCATCCTACCTGAAAGATATCTTtaacatttaaaatttaaa
acttcCTATACATAATGTAATTCCACTATGAATATGTTTTGGCCTTTCCT
TGAGATAAGAGTTTTCTGTGCCACTATCGTTCAGTGTTAGTATTTGACCT
GTTTTGGTGCTAGCTCGTCGATTTATGGTTTACGGATTTTAAAAGTTGGC
CAATTTTATTGTGCAATCATTTGTTTAAACCGTTGTAACATagtttgaac
tttttttaaaaaaataaatactttgttcttttttgcATGTAAAATTACTT
TTTGACCAGTATTTTATTATACTATAAAGACTGGAAGAGATTTTTTGTAC
CTTTTACTCAACGAAATCACTATACCATTACGAGTGTCTTTTCATCGATT
ACGGCATGGACAACATTTGACTCCCTTTCTTGCGAAGTAATCTACGACAA
TTTATTACTAAAGGAATCCATATCGAATGTNCATTTGACTCCCTTTCTTG
CAAAGTAATCTACGACAATTTATTACTAAAGGAATCCATATCGAATGTTT
TGTTCCTCAAGTCATCTTTGAAAAGGGGCATTCCATTTTTGTTCCGTAAT
CAATGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034874XLOC_034874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055359-exon-scaffold_253-1491911889:651978..652241TCONS_00055359-exon-scaffold_253-1491911889:651978..652241Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:651978..652241TCONS_00055359-exon-scaffold_253-1510915933:651978..652241Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:651978..652241TCONS_00055359-exon-scaffold_253-1575043694:651978..652241Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:652627..652722TCONS_00055359-exon-scaffold_253-1491911889:652627..652722Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:652627..652722TCONS_00055359-exon-scaffold_253-1510915933:652627..652722Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:652627..652722TCONS_00055359-exon-scaffold_253-1575043694:652627..652722Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:654983..655040TCONS_00055359-exon-scaffold_253-1491911889:654983..655040Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:654983..655040TCONS_00055359-exon-scaffold_253-1510915933:654983..655040Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:654983..655040TCONS_00055359-exon-scaffold_253-1575043694:654983..655040Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:655270..655325TCONS_00055359-exon-scaffold_253-1491911889:655270..655325Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:655270..655325TCONS_00055359-exon-scaffold_253-1510915933:655270..655325Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:655270..655325TCONS_00055359-exon-scaffold_253-1575043694:655270..655325Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:659791..659855TCONS_00055359-exon-scaffold_253-1491911889:659791..659855Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:659791..659855TCONS_00055359-exon-scaffold_253-1510915933:659791..659855Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:659791..659855TCONS_00055359-exon-scaffold_253-1575043694:659791..659855Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:663108..663205TCONS_00055359-exon-scaffold_253-1491911889:663108..663205Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:663108..663205TCONS_00055359-exon-scaffold_253-1510915933:663108..663205Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:663108..663205TCONS_00055359-exon-scaffold_253-1575043694:663108..663205Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:664580..664696TCONS_00055359-exon-scaffold_253-1491911889:664580..664696Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:664580..664696TCONS_00055359-exon-scaffold_253-1510915933:664580..664696Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:664580..664696TCONS_00055359-exon-scaffold_253-1575043694:664580..664696Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1491911889:665165..666387TCONS_00055359-exon-scaffold_253-1491911889:665165..666387Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1510915933:665165..666387TCONS_00055359-exon-scaffold_253-1510915933:665165..666387Clytia hemisphaericaexon
TCONS_00055359-exon-scaffold_253-1575043694:665165..666387TCONS_00055359-exon-scaffold_253-1575043694:665165..666387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:651978..666387 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41874	2.66165	1.5936	9.62255	0	0	1.33311	1.78066	5.12246	2.64784	4.47741	5.99186	0.782114	0.518136	0.39478	0.131995	0.344119	0.181986	0	0.259271	2.4726	0.564503	0.983136	2.71459	1.01743	1.55559	0.000288145	4.56781	3.27692	1.12578
Blast
[Close]
BLAST of TCONS_00055359 vs. Swiss-Prot (Human)
Match: PHAR2 (Phosphatase and actin regulator 2 OS=Homo sapiens GN=PHACTR2 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 2.114e-55
Identity = 103/167 (61.68%), Postives = 133/167 (79.64%), Query Frame = 3 
Query:  267 LASKVKRSDSLALKLGARPSRSELEGKNIIPTQSDDEKLALRSKVGTNLVRRLSQRPSKEELEQRNIYRTTTDEETHQKNLEETKRQLSRKLSRRPTIKELRKKKIIGFNEYVEVFEVQEYDRRADKPWTRLTPKDKASIRKELNEYKEYEMDVHEESKIYTRFHRP 767
            LASK++R D+LA+KLG RPS+ ELE KNI+   S++E+  +R ++GT LVRRLSQRP+ EELEQRNI +   +EE  +  +E  KR+LSRKLS RPT+ EL+ ++I+ FNEYVEV +  +YDRRADKPW RLTP DKA+IRKELNE+K  EM+VHEES+ +TRFHRP
Sbjct:  469 LASKIRRRDTLAIKLGNRPSKKELEDKNILQRTSEEERQEIRQQIGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKME-LKRRLSRKLSLRPTVAELQARRILRFNEYVEVTDSPDYDRRADKPWARLTPADKAAIRKELNEFKSTEMEVHEESRQFTRFHRP 634
The following BLAST results are available for this feature:
BLAST of TCONS_00055359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHAR22.114e-5561.68Phosphatase and actin regulator 2 OS=Homo sapiens ... [more]
back to top