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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055351 ID=TCONS_00055351|Name=TCONS_00055351|organism=Clytia hemisphaerica|type=transcript|length=1837bp
caaaaatctTCTTCTTTTAAGTTATTGATACAATTCCGCATTCAAATTTT
GCGGATCAACTATGATTTAGACTGTAAACcttaaatgatttttgaaaatg
gagGCAAGGAAAAAGTCAGAAAGCAAAACTGAGAAAGAAAGAAGTAAAGa
GAAGAAAGAGGGTTCGTACGCAACAAAGGTTGAAGAATATTCGTCATCTT
TCACCATCCATGGTTTATCCAGAAGCATTCACACCAACTCTCGTCTCGAA
CGTATCTTTTGGGCTCTGACTCTCTCTTTAGCAATCGTTGTTGCATGTCT
TCTGGTGCAAACACTGATCAATAAATTCTGGAGACAAGATGTATACGTCA
AAAGTGAGACACGAGTCACTAAAAATAACACTTTTCCCGCTGTGACTTTC
TGTTTACGACCCATTGCGcaatttttcaagaagtatGAATTTTGTGAATT
AAGAGCTAATGATGCGTTGCCAGGGAAATTTCATCCTTCACTCAAATCTT
GTAATACAAAGGCTGCTTGGTGGGAAACGCTTTTTCATTTTGAGAATATG
TTAGAGTTCTCATATGTTCCTGGTCAGATAGAAATTGATGCTGTACCAGC
AAGAAATTTCAACATTATGTGCCCACGTTCTAGTGTCTCTAGTATGTGTG
TCCAAGACTATCTAGATGAGAAATATTTTCGGACGCTAAATGGTTCTTGG
GATTGTATACAGTGGAACTATAACGGAGATTTCTCAAATTCTCAGAACAG
AATTGATTTACAATTAACAGTGGATTCTTTTCACGAAGCAATTACTTCCG
TGGTCGCTTATGTACACGATCACCAAGAATCACCGATACCTTCCGATCGA
TTTGTTCGATTTGAACGTTTCTCGAACACCGAGATTCAAATAAAGAAATC
TATccggaaaaaaatcaaaagagaaTCACCAAATAACTGTGAAAATCAAT
ATTACAACaatcccaaaaatattttccctggTAAATATTCTGTTGAAGCT
TGCATTGAAACAAATACTTGTTTAGAGGCCTTGAAAAAATGTGGAGAAGT
GATCGATTTTTGTCGCTCGTTCATTCCTCATCCGTTGCTAGAGAGACATT
GGGTTGCTAACCAATCATTGGTTGATGTTCATGATTGTCTGTATGAAGGC
TATAGGAAAGGTTTATTTGACGCTGACGGAGAGATTTGCCCACCACCTTG
TGATCGAACCTTTTTCTCAACCTCGATGTCCGCCACGCGACGAATACCTC
CAACGTCAGCTGTGGTGAGTTTGCTATTTACTGAACGAAATGTGTATGAG
ACGCAAACTGAAACAGTCCTGTATACTTGGGAGGACGTGTTAGCAGGTGT
CGGTGGAATGATTGGCTTATTTTGTGGCTTTTCAATATTGTCTTTTGCTG
AATTGATCATTTACGctggtctgaaaattttattattcttCAGAAAGGAC
AAACAAAAGAGAAGGAGAGATTATGAAATGAACGACGATATACCTGGTAG
TGCAGTCAACCAAACGGTTAATCAGTGAAAGAGGAATGTTTGGTATTGGG
TTGTTAACAAAAATCACTAATATCACATCCCGAGAGGAGAGTGCGTACTT
GAATGCAGTGAAATCTTAATCTACTGAATGGAAGAAGAAATTTACTTCTA
GTTCCATCTCTTCGAGCTGGGTTTTCATTCTAGCTGAAAATTGTTTTCTC
CCTACACAAATTCTCCGACACCCCTGAAAACGCTACTGTCGTCTTACATG
TATAATTTATCACGTAATCGAaagtttaaaattcaaaattaattagAACC
TTATTTTTGACCTACTGAGCTCGGAGGTTCTTTAAAT Run BLAST on NCBI transcript from alignment at scaffold_253:558752..561114+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055351 ID=TCONS_00055351|Name=TCONS_00055351|organism=Clytia hemisphaerica|type=transcript|length=2363bp|location=Sequence derived from alignment at scaffold_253:558752..561114+ (Clytia hemisphaerica)
caaaaatctTCTTCTTTTAAGTTATTGATACAATTCCGCATTCAAATTTT
GCGGATCAACTATGATTTAGACTGTAAACcttaaatgatttttgaaaatg
gagGCAAGGAAAAAGTCAGAAAGCAAAACTGAGAAAGAAAGAAGTAAAGG
TATAATTTCTTTgaaggatttaaattttttgatctTTCAGTTACTCCCGA
GCTATCCATTTATCACCAgatcaattttatttatttatttcttgctttaa
aaaagtaaaaaggcCATTTGATTTCAGCTTCTGATGGGATATAAAGGGTT
TTCGAACCAATTACTCTCACCTATTAAATATGATATATATATTTATTTAG
ATATGCACGCTGATAAAACTAATCAAAGCTAAcctccaaataaaaaaaag
ttctcAAACTGGATTTATATTAGATTTAATGCTTGAAATTGagatttatt
tttgttgttaaaaatttaaacaaggTTATCAAACTTGGGATCTGAAATCT
GAAATGGGATCTTTAGAATTGAACGAAAAAACACCAAGGAATAAAAATAC
GAGAAACTTCGTAGAAGGTATGCTTTCTAAATTATACCTTCTTGAATACT
GTAGAAGTAGCTTCTCCCTTTCCCTCCTGTGTCTCGAAAATTTGCTTTCA
TAagatcttttttgtttcttttcagaGAAGAAAGAGGGTTCGTACGCAAC
AAAGGTTGAAGAATATTCGTCATCTTTCACCATCCATGGTTTATCCAGAA
GCATTCACACCAACTCTCGTCTCGAACGTATCTTTTGGGCTCTGACTCTC
TCTTTAGCAATCGTTGTTGCATGTCTTCTGGTGCAAACACTGATCAATAA
ATTCTGGAGACAAGATGTATACGTCAAAAGTGAGACACGAGTCACTAAAA
ATAACACTTTTCCCGCTGTGACTTTCTGTTTACGACCCATTGCGcaattt
ttcaagaagtatGAATTTTGTGAATTAAGAGCTAATGATGCGTTGCCAGG
GAAATTTCATCCTTCACTCAAATCTTGTAATACAAAGGCTGCTTGGTGGG
AAACGCTTTTTCATTTTGAGAATATGTTAGAGTTCTCATATGTTCCTGGT
CAGATAGAAATTGATGCTGTACCAGCAAGAAATTTCAACATTATGTGCCC
ACGTTCTAGTGTCTCTAGTATGTGTGTCCAAGACTATCTAGATGAGAAAT
ATTTTCGGACGCTAAATGGTTCTTGGGATTGTATACAGTGGAACTATAAC
GGAGATTTCTCAAATTCTCAGAACAGAATTGATTTACAATTAACAGTGGA
TTCTTTTCACGAAGCAATTACTTCCGTGGTCGCTTATGTACACGATCACC
AAGAATCACCGATACCTTCCGATCGATTTGTTCGATTTGAACGTTTCTCG
AACACCGAGATTCAAATAAAGAAATCTATccggaaaaaaatcaaaagaga
aTCACCAAATAACTGTGAAAATCAATATTACAACaatcccaaaaatattt
tccctggTAAATATTCTGTTGAAGCTTGCATTGAAACAAATACTTGTTTA
GAGGCCTTGAAAAAATGTGGAGAAGTGATCGATTTTTGTCGCTCGTTCAT
TCCTCATCCGTTGCTAGAGAGACATTGGGTTGCTAACCAATCATTGGTTG
ATGTTCATGATTGTCTGTATGAAGGCTATAGGAAAGGTTTATTTGACGCT
GACGGAGAGATTTGCCCACCACCTTGTGATCGAACCTTTTTCTCAACCTC
GATGTCCGCCACGCGACGAATACCTCCAACGTCAGCTGTGGTGAGTTTGC
TATTTACTGAACGAAATGTGTATGAGACGCAAACTGAAACAGTCCTGTAT
ACTTGGGAGGACGTGTTAGCAGGTGTCGGTGGAATGATTGGCTTATTTTG
TGGCTTTTCAATATTGTCTTTTGCTGAATTGATCATTTACGctggtctga
aaattttattattcttCAGAAAGGACAAACAAAAGAGAAGGAGAGATTAT
GAAATGAACGACGATATACCTGGTAGTGCAGTCAACCAAACGGTTAATCA
GTGAAAGAGGAATGTTTGGTATTGGGTTGTTAACAAAAATCACTAATATC
ACATCCCGAGAGGAGAGTGCGTACTTGAATGCAGTGAAATCTTAATCTAC
TGAATGGAAGAAGAAATTTACTTCTAGTTCCATCTCTTCGAGCTGGGTTT
TCATTCTAGCTGAAAATTGTTTTCTCCCTACACAAATTCTCCGACACCCC
TGAAAACGCTACTGTCGTCTTACATGTATAATTTATCACGTAATCGAaag
tttaaaattcaaaattaattagAACCTTATTTTTGACCTACTGAGCTCGG
AGGTTCTTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055351-exon-scaffold_253-1491911889:558752..558900 | TCONS_00055351-exon-scaffold_253-1491911889:558752..558900 | Clytia hemisphaerica | exon |
| TCONS_00055351-exon-scaffold_253-1510915933:558752..558900 | TCONS_00055351-exon-scaffold_253-1510915933:558752..558900 | Clytia hemisphaerica | exon |
| TCONS_00055351-exon-scaffold_253-1575043694:558752..558900 | TCONS_00055351-exon-scaffold_253-1575043694:558752..558900 | Clytia hemisphaerica | exon |
| TCONS_00055351-exon-scaffold_253-1491911889:559427..561114 | TCONS_00055351-exon-scaffold_253-1491911889:559427..561114 | Clytia hemisphaerica | exon |
| TCONS_00055351-exon-scaffold_253-1510915933:559427..561114 | TCONS_00055351-exon-scaffold_253-1510915933:559427..561114 | Clytia hemisphaerica | exon |
| TCONS_00055351-exon-scaffold_253-1575043694:559427..561114 | TCONS_00055351-exon-scaffold_253-1575043694:559427..561114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:558752..561114 + |
Blast
The following BLAST results are available for this feature:
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