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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GGTTAGTTAACCTTGATAATCCCTCCTTAAGCTAATTTAATCTATATGTT
AACACATTACGTCACCTTACAAAACCTATAAATTGACAACACTTTCAGGA
GTTGGGAACCATAACTGATTGAACTACGAGCAAGTAAACGTCTCATTCGT
ATCATTTTTTTTAGAACAATTTAGAAAAGGAACATGAATACGTCAAATGT
CCTCAAATTATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGAC
CAATGCTAAGTGGACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCC
ACACATGCTTGTGCTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACT
GAAATGTACTGTCGACCAGTCTGATGATTCAGTTACTTGCTTAATGGACT
GTGATCAAAACTTTTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAA
CACTTCCCAACTTTTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCT
TGATCAGAAAAAAGTCATTGATACCTCCCTTCTAACGTGCCAACCACACA
AACAATaaggtattttacagaccagaatataaAGCACTTACCTTGGATAT
GGTTGCCATGGAGCATTTAATGACGTGACCATGCAAATGGCTAAaatgaa
acaattaaaaattgcGTTGACAAATACAGGAGGTGACGAGGAATCAGACT
ATTCAATTTACAACTCACTTCAAAATCCGAGACAGCAGTTTTCTTTGCAT
AAAGTTGGATTTACACACACCAATTTGTCGGCCGACTTCCAAGTAACTAA
AGGCATAATGCGACGACAACGTAAATGAGGCATCTGTGAATCTTCTCATT
TAGCTGAACTGTTGACCGATAAAACTAGTGTGTGTGAAGAAGTATTAGTA
TTTAGAAGAAATGTCCTTGTGAAATATGAATTTTTTCCATTGGCGATAGT
AGATCTTTAAGAGGATTCGTTTATTTCATCAAGTCAtgttattgtaaata
tttttatttatgtgtaacacaaacaccaaaaaacGGATGAAG Run BLAST on NCBI protein sequence of TCONS_00055331-protein >TCONS_00055331-protein ID=TCONS_00055331-protein|Name=TCONS_00055331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MNTSNVLKLFLCGILMGIVLSRPMLSGLGDHLLTDGVLSTHACAKTPKFP
PTNGKLKCTVDQSDDSVTCLMDCDQNFSHDFGGQATGFKHFPTFICDKNS
VWRHFLDQKKVIDTSLLTCQPHKQ Run BLAST on NCBI transcript from alignment at scaffold_253:264973..266151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_253:264973..266151+ (Clytia hemisphaerica)
GGTTAGTTAACCTTGATAATCCCTCCTTAAGCTAATTTAATCTATATGTT
AACACATTACGTCACCTTACAAAACCTATAAATTGACAACACTTTCAGGA
GTTGGGAACCATAACTGATTGAACTACGAGCAAGTAAACGTCTCATTCGT
ATCATTTTTTTTAGAACAATTTAGAAAAGGAACATGAATACGTCAAATGT
CCTCAAATTATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGAC
CAATGCTAAGTGGTAGGTACCGCTTTacatttatttgataaaatattttg
ttgtatCGACAAACGACCGATGAAGACCTAATTTTCTGGCCAGCATCGCA
ATAGaccactttttttaattttttcgatatatctttttcttttccaaaGG
ACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCCACACATGCTTGTG
CTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACTGAAATGTACTGTC
GACCAGTCTGATGATTCAGTTACTTGCTTAATGGACTGTGATCAAAACTT
TTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAACACTTCCCAACTT
TTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCTTGATCAGAAAAAA
GTCATTGATACCTCCCTTCTAACGTGCCAACCACACAAACAATaaggtat
tttacagaccagaatataaAGCACTTACCTTGGATATGGTTGCCATGGAG
CATTTAATGACGTGACCATGCAAATGGCTAAaatgaaacaattaaaaatt
gcGTTGACAAATACAGGAGGTGACGAGGAATCAGACTATTCAATTTACAA
CTCACTTCAAAATCCGAGACAGCAGTTTTCTTTGCATAAAGTTGGATTTA
CACACACCAATTTGTCGGCCGACTTCCAAGTAACTAAAGGCATAATGCGA
CGACAACGTAAATGAGGCATCTGTGAATCTTCTCATTTAGCTGAACTGTT
GACCGATAAAACTAGTGTGTGTGAAGAAGTATTAGTATTTAGAAGAAATG
TCCTTGTGAAATATGAATTTTTTCCATTGGCGATAGTAGATCTTTAAGAG
GATTCGTTTATTTCATCAAGTCAtgttattgtaaatatttttatttatgt
gtaacacaaacaccaaaaaacGGATGAAG Coding sequence (CDS) from alignment at scaffold_253:264973..266151+ >TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_253:264973..266151+ (Clytia hemisphaerica)
ATGAATACGTCAAATGTCCTCAAATTATTCTTATGTGGTATTCTGATGGG
AATTGTTTTATCTCGACCAATGCTAAGTGGACTTGGCGATCATTTACTAA
CAGATGGCGTTCTTTCCACACATGCTTGTGCTAAAACACCCAAGTTCCCT
CCAACGAACGGAAAACTGAAATGTACTGTCGACCAGTCTGATGATTCAGT
TACTTGCTTAATGGACTGTGATCAAAACTTTTCGCATGACTTTGGTGGTC
AAGCAACTGGCTTCAAACACTTCCCAACTTTTATCTGTGATAAGAACTCA
GTTTGGAGACATTTCCTTGATCAGAAAAAAGTCATTGATACCTCCCTTCT
AACGTGCCAACCACACAAACAATaaATGAATACGTCAAATGTCCTCAAAT
TATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGACCAATGCTA
AGTGGACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCCACACATGC
TTGTGCTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACTGAAATGTA
CTGTCGACCAGTCTGATGATTCAGTTACTTGCTTAATGGACTGTGATCAA
AACTTTTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAACACTTCCC
AACTTTTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCTTGATCAGA
AAAAAGTCATTGATACCTCCCTTCTAACGTGCCAACCACACAAACAATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055331-exon-scaffold_253-1491911889:264973..265234 | TCONS_00055331-exon-scaffold_253-1491911889:264973..265234 | Clytia hemisphaerica | exon |
| TCONS_00055331-exon-scaffold_253-1510915933:264973..265234 | TCONS_00055331-exon-scaffold_253-1510915933:264973..265234 | Clytia hemisphaerica | exon |
| TCONS_00055331-exon-scaffold_253-1575043694:264973..265234 | TCONS_00055331-exon-scaffold_253-1575043694:264973..265234 | Clytia hemisphaerica | exon |
| TCONS_00055331-exon-scaffold_253-1491911889:265372..266151 | TCONS_00055331-exon-scaffold_253-1491911889:265372..266151 | Clytia hemisphaerica | exon |
| TCONS_00055331-exon-scaffold_253-1510915933:265372..266151 | TCONS_00055331-exon-scaffold_253-1510915933:265372..266151 | Clytia hemisphaerica | exon |
| TCONS_00055331-exon-scaffold_253-1575043694:265372..266151 | TCONS_00055331-exon-scaffold_253-1575043694:265372..266151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:264973..266151 + |
Blast
The following BLAST results are available for this feature:
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