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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055330 ID=TCONS_00055330|Name=TCONS_00055330|organism=Clytia hemisphaerica|type=transcript|length=1622bp
AAAAAGTTTAGTAACAGATTAATAAAAGTAgtatcatttttaaaaagata
ttatcaCTTTGAAAAAGATAGTGTCGCTTTGAGAAAGATAGTATCGGTTT
AACAAAGATAGTGtcgtgaaatgaaagatagtgtcgccaaaagatagtat
ttatttccgctttggcgcacCATATATATAAAGTCAATCAAAATCGCGTG
CAAACACGTCTTGTGAAGCTTCTCATTGGTCAAGCACGTAAACTTATTTA
GTTTCTCGAAGGCCGATATTcactagcgagtttatgtatttgctcttttg
aggacggtaaaagtgctggtttaccgtcgtcctcagctggtcaggatcta
gtcgaATTAGAACCTTATCGTCTCCgtcacagaaaaacacacatattaTA
AACTCGGTACTGTTGAGCCAAGCGGGGAAATTTTGCCCGGATAAAAGTTT
AGCCTGGATGTAAATTCtatcagccaatcagattcgagctTTACTTCTTC
CCCTTAACCCATCATCCAGTCTATCAGAAAGCTCTAAGCGGCCTTTAGGC
TACTATCTGCATACTTCCATAGAAATATACATAGATGGATGGATGaaaga
tacatggatacatagatactTAACGCAAAGCTTATAACAACAGAGGTTCA
ATgtccaaaaagttgcAATGAACTTCTATCAAGAAAAGTGTTTCTGTAGT
CGACACTCAAATATTCTAAGAACATGACTCATCGCTTAATAATAAATAAG
AACAACATTGAATAATGCTAATGACTGTTCATTATTCATTGGAAAAGGCT
GATAAAGGCAAATAAACGATGGAGCATTGAACAGAGTTTTTGCCAACAGA
CTTCAACCTATTCGGCTATAGGTATCAAACAAAGTATATCTCAGAAATCA
ATCNGACTTCAACCTATTCAGGCTATAGGTATCAAACAAAGTATATCTCA
GAAATCAATCAAGAAATGAACAAAGAAACTAAAAAAACATCCTGTAACTC
AAAAGAAGGTGTTGGTGAAgaatctttcaaaagaaaagaaaatgagcTGG
ATGACGAAGACAAAAGCAGTAGCTCCTCCTCAGGAGAACATGTTCCAGAG
AGGTCCAATAACAAAACCGAAATGTatttatgaaaacaaaattcgAGGTT
CACACAAGTTAAAAACGCAAAAGTAAAAGTCGTCGAAATACCAGATTGGA
CGGAAGTAATGCCTCAATATTGACACCAGGGAAATACATTTATCCTTTGC
TTATTAAGGATTGCTTGCTTAGGATCTCACTAAATATAGACATAAGGTTA
GCTACCTATTCATCGTTCCAACAATCATATTGTTTTTTGGAGAACAGGTC
ACAGGGTCCATTGTTAAAATATCTATTTCGTTATAGTTACCCTTTTCCAT
TGCATGAAGTTTTCTATCTAAATCAACCAATATCATGCTGTTTTTCCCTT
GAATGTTGTATTCACTCAAAGGGTTATTGTTTGTTTGGTCCGCTGAATGC
GCCAAAATATGATAGAAATCAGGTTCCAAACACTTGAATTTTGTGCTCTT
TGGATATAGAATGTCTGTTGTTGACCGAATGCCACCATAACAACAAGGTG
CAATAACGAATGAAGACCTATG Run BLAST on NCBI transcript from alignment at scaffold_253:240405..242440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055330 ID=TCONS_00055330|Name=TCONS_00055330|organism=Clytia hemisphaerica|type=transcript|length=2036bp|location=Sequence derived from alignment at scaffold_253:240405..242440+ (Clytia hemisphaerica)
AAAAAGTTTAGTAACAGATTAATAAAAGTAgtatcatttttaaaaagata
ttatcaCTTTGAAAAAGATAGTGTCGCTTTGAGAAAGATAGTATCGGTTT
AACAAAGATAGTGtcgtgaaatgaaagatagtgtcgccaaaagatagtat
ttatttccgctttggcgcacCATATATATAAAGTCAATCAAAATCGCGTG
CAAACACGTCTTGTGAAGCTTCTCATTGGTCAAGCACGTAAACTTATTTA
GTTTCTCGAAGGCCGATATTcactagcgagtttatgtatttgctcttttg
aggacggtaaaagtgctggtttaccgtcgtcctcagctggtcaggatcta
gtcgaATTAGAACCTTATCGTCTCCgtcacagaaaaacacacatattaTA
AACTCGGTACTGTTGAGCCAAGCGGGGAAATTTTGCCCGGATAAAAGTTT
AGCCTGGATGTAAATTCtatcagccaatcagattcgagctTTACTTCTTC
CCCTTAACCCATCATCCAGTCTATCAGAAAGCTCTAAGCGGCCTTTAGGC
TACTATCTGCATACTTCCATAGAAATATACATAGATGGATGGATGaaaga
tacatggatacatagatactTAACGCAAAGCTTATAACAACAGAGGTTCA
ATGtctaacaagcaacatgctgaatggacctacctgatgataaaagttag
atagcaatgcgagaagaaaaatgaaaaaaatcagtcagtcaatagttccg
gcttcaaaaatcaattttaatgaaagtttgaacctgtttgatggtgggca
ttgctattaataatgtttttgaatgaaaaaacaaccaattataaggaaaa
agcccaatgaaaatccagaaaaacggcgatttccggcatatttccggaaa
aaaaatttttctcaaaaatcggactcggccatgttttgggcattgttaat
acgcatctttgagcaaaaaatcagaaaaaactaatgagccaatcctgaga
aaagctggtaacagacggacgaacggacgaacggacatcggttaatttat
aggacctccgaggtaggtccaaaaagttgcAATGAACTTCTATCAAGAAA
AGTGTTTCTGTAGTCGACACTCAAATATTCTAAGAACATGACTCATCGCT
TAATAATAAATAAGAACAACATTGAATAATGCTAATGACTGTTCATTATT
CATTGGAAAAGGCTGATAAAGGCAAATAAACGATGGAGCATTGAACAGAG
TTTTTGCCAACAGACTTCAACCTATTCGGCTATAGGTATCAAACAAAGTA
TATCTCAGAAATCAATCNGACTTCAACCTATTCAGGCTATAGGTATCAAA
CAAAGTATATCTCAGAAATCAATCAAGAAATGAACAAAGAAACTAAAAAA
ACATCCTGTAACTCAAAAGAAGGTGTTGGTGAAgaatctttcaaaagaaa
agaaaatgagcTGGATGACGAAGACAAAAGCAGTAGCTCCTCCTCAGGAG
AACATGTTCCAGAGAGGTCCAATAACAAAACCGAAATGTatttatgaaaa
caaaattcgAGGTTCACACAAGTTAAAAACGCAAAAGTAAAAGTCGTCGA
AATACCAGATTGGACGGAAGTAATGCCTCAATATTGACACCAGGGAAATA
CATTTATCCTTTGCTTATTAAGGATTGCTTGCTTAGGATCTCACTAAATA
TAGACATAAGGTTAGCTACCTATTCATCGTTCCAACAATCATATTGTTTT
TTGGAGAACAGGTCACAGGGTCCATTGTTAAAATATCTATTTCGTTATAG
TTACCCTTTTCCATTGCATGAAGTTTTCTATCTAAATCAACCAATATCAT
GCTGTTTTTCCCTTGAATGTTGTATTCACTCAAAGGGTTATTGTTTGTTT
GGTCCGCTGAATGCGCCAAAATATGATAGAAATCAGGTTCCAAACACTTG
AATTTTGTGCTCTTTGGATATAGAATGTCTGTTGTTGACCGAATGCCACC
ATAACAACAAGGTGCAATAACGAATGAAGACCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055330-exon-scaffold_253-1491911889:240405..241056 | TCONS_00055330-exon-scaffold_253-1491911889:240405..241056 | Clytia hemisphaerica | exon |
| TCONS_00055330-exon-scaffold_253-1510915933:240405..241056 | TCONS_00055330-exon-scaffold_253-1510915933:240405..241056 | Clytia hemisphaerica | exon |
| TCONS_00055330-exon-scaffold_253-1575043694:240405..241056 | TCONS_00055330-exon-scaffold_253-1575043694:240405..241056 | Clytia hemisphaerica | exon |
| TCONS_00055330-exon-scaffold_253-1491911889:241471..242440 | TCONS_00055330-exon-scaffold_253-1491911889:241471..242440 | Clytia hemisphaerica | exon |
| TCONS_00055330-exon-scaffold_253-1510915933:241471..242440 | TCONS_00055330-exon-scaffold_253-1510915933:241471..242440 | Clytia hemisphaerica | exon |
| TCONS_00055330-exon-scaffold_253-1575043694:241471..242440 | TCONS_00055330-exon-scaffold_253-1575043694:241471..242440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:240405..242440 + |
Blast
BLAST of TCONS_00055330 vs. Swiss-Prot (Human)
Match: GSTCD (Glutathione S-transferase C-terminal domain-containing protein OS=Homo sapiens GN=GSTCD PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 3.433e-17 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -1
Query: 1314 RSSFVIAPCCYGGIRSTTDILYPKSTKF-KCLEPDFYHILAHSADQTNNNPLSEYNIQGKNSMILVDLDRKLHAMEKGNYNEIDILTMDPVTCSPKNNMIVGT 1619
R+SFV PCCYG I++T+ +PKS +F K L + IL ADQT + + GK M LVDLDR A E+ Y+ + +++M+P +CSPKNNMIVG
Sbjct: 531 RASFVTCPCCYGFIQNTSKFNFPKSEQFKKTLSYKEHMILCRFADQTAVQLPPQRRLIGKQCMCLVDLDRA-RAAEECGYS-VQVISMEPESCSPKNNMIVGV 631
The following BLAST results are available for this feature:
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