TCONS_00055287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055287
Unique NameTCONS_00055287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055287 ID=TCONS_00055287|Name=TCONS_00055287|organism=Clytia hemisphaerica|type=transcript|length=461bp
ACAACTTGTTGTTTTTTCTCTTGCGTTATAATAGAGATGTTAGAATCGTG
TTACGTGTTTCATACATGTTATCTTGTGTAGTAGAATATTCTTGAAGTAG
AATCTTGTTTGCATACATGTGCGTGGAAGTAtggttcaatgaagtataat
CCCGAAGggacctttctcaggcaagaaaaagtgaagccttaaaatatgcg
ccgtattttttaccacggattgtatctagcgattcctttgtttttgagta
aCATCTTTTTCGAAATGCAGATGTGAATTTTAGCTTAGATCTGTCATCTG
TGTAAAAACCAGATGGACTGCactaggccgcgcaactttggtaggatttg
gtaGGCTTGAAATCCTAACAAGGAGATccgattctagcccttcagtctta
tacttcattggtatGGTTGTgtctaggctgcacgcatcttCAGAATTAAT
TTTAATGTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_251:746822..747282

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055287 ID=TCONS_00055287|Name=TCONS_00055287|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at scaffold_251:746822..747282 (Clytia hemisphaerica)
CCTACATTAAAATTAATTCTGaagatgcgtgcagcctagacACAACCata
ccaatgaagtataagactgaagggctagaatcggATCTCCTTGTTAGGAT
TTCAAGCCtaccaaatcctaccaaagttgcgcggcctagtGCAGTCCATC
TGGTTTTTACACAGATGACAGATCTAAGCTAAAATTCACATCTGCATTTC
GAAAAAGATGttactcaaaaacaaaggaatcgctagatacaatccgtggt
aaaaaatacggcgcatattttaaggcttcactttttcttgcctgagaaag
gtccCTTCGGGattatacttcattgaaccaTACTTCCACGCACATGTATG
CAAACAAGATTCTACTTCAAGAATATTCTACTACACAAGATAACATGTAT
GAAACACGTAACACGATTCTAACATCTCTATTATAACGCAAGAGAAAAAA
CAACAAGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034830XLOC_034830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055287-exon-scaffold_251-1491911889:746822..747282TCONS_00055287-exon-scaffold_251-1491911889:746822..747282Clytia hemisphaericaexon
TCONS_00055287-exon-scaffold_251-1510915933:746822..747282TCONS_00055287-exon-scaffold_251-1510915933:746822..747282Clytia hemisphaericaexon
TCONS_00055287-exon-scaffold_251-1575043694:746822..747282TCONS_00055287-exon-scaffold_251-1575043694:746822..747282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:746822..747282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.142728	0.239701	0	0	0.618052	0	0	0	0	0	0.657219	0.468157	0	0.0809612	0.438913	0.109667	0.108437	0	0	1.40342	0.215571	0.161421	0.601146	0	0.134902	3.58758	2.26624	5.84672	6.27661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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