TCONS_00055276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055276
Unique NameTCONS_00055276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055276 ID=TCONS_00055276|Name=TCONS_00055276|organism=Clytia hemisphaerica|type=transcript|length=561bp
GCTAAATTACCCTTTATCGACAGACCATCAAAGCTCGCTCCCAACAAAGA
CATTGCTTCTCGTATCTATTATCAACAACTGAAGAAACTTGATCGTCCAg
agaacaacaaagacaaagCCGACATCCTTGAATCGGAAGCCAAGTTGCAA
AAGCTTGAGTACGTTGAGTATGTCGAAAACCTTACACCTGAGCAACAATC
AACACTGAGAGaaacaaccaaccaaaatttcattccaTGGCGTGCCGTCT
GGAAGGAGAGTTCTGTCAGCACTCCGTGCCGTGTTGTATTTGATGCATCG
CATCCAACATCATCTGGTGTCAGCCTCAATGACATCCTGGCCAAAGGACA
AAACAACTATAACAAACTACAAAATCTTCTCATCCGTTGGTCAACACACC
TGATTGGCATCCACACTGACATCCGAAAGATGTACAACACCATTAATCTA
CATCAAGAGCACTGGCAATTCCAGAGATACATATGGCAAAAAGACTTGGA
TCCATCAAAAATCCCtaaagaaaaaatcattaaGACGCTCATTTACGGAG
TCCGATCATCA
Run BLAST on NCBI

protein sequence of TCONS_00055276-protein

>TCONS_00055276-protein ID=TCONS_00055276-protein|Name=TCONS_00055276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
AKLPFIDRPSKLAPNKDIASRIYYQQLKKLDRPENNKDKADILESEAKLQ
KLEYVEYVENLTPEQQSTLRETTNQNFIPWRAVWKESSVSTPCRVVFDAS
HPTSSGVSLNDILAKGQNNYNKLQNLLIRWSTHLIGIHTDIRKMYNTINL
HQEHWQFQRYIWQKDLDPSKIPKEKIIKTLIYGVRSS
Run BLAST on NCBI

transcript from alignment at scaffold_251:640289..640849

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055276 ID=TCONS_00055276|Name=TCONS_00055276|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at scaffold_251:640289..640849 (Clytia hemisphaerica)
TGATGATCGGACTCCGTAAATGAGCGTCttaatgattttttctttaGGGA
TTTTTGATGGATCCAAGTCTTTTTGCCATATGTATCTCTGGAATTGCCAG
TGCTCTTGATGTAGATTAATGGTGTTGTACATCTTTCGGATGTCAGTGTG
GATGCCAATCAGGTGTGTTGACCAACGGATGAGAAGATTTTGTAGTTTGT
TATAGTTGTTTTGTCCTTTGGCCAGGATGTCATTGAGGCTGACACCAGAT
GATGTTGGATGCGATGCATCAAATACAACACGGCACGGAGTGCTGACAGA
ACTCTCCTTCCAGACGGCACGCCAtggaatgaaattttggttggttgttt
CTCTCAGTGTTGATTGTTGCTCAGGTGTAAGGTTTTCGACATACTCAACG
TACTCAAGCTTTTGCAACTTGGCTTCCGATTCAAGGATGTCGGctttgtc
tttgttgttctcTGGACGATCAAGTTTCTTCAGTTGTTGATAATAGATAC
GAGAAGCAATGTCTTTGTTGGGAGCGAGCTTTGATGGTCTGTCGATAAAG
GGTAATTTAGC

Coding sequence (CDS) from alignment at scaffold_251:640289..640849

>TCONS_00055276 ID=TCONS_00055276|Name=TCONS_00055276|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_251:640289..640849 (Clytia hemisphaerica)
TGATGATCGGACTCCGTAAATGAGCGTCttaatgattttttctttaGGGA
TTTTTGATGGATCCAAGTCTTTTTGCCATATGTATCTCTGGAATTGCCAG
TGCTCTTGATGTAGATTAATGGTGTTGTACATCTTTCGGATGTCAGTGTG
GATGCCAATCAGGTGTGTTGACCAACGGATGAGAAGATTTTGTAGTTTGT
TATAGTTGTTTTGTCCTTTGGCCAGGATGTCATTGAGGCTGACACCAGAT
GATGTTGGATGCGATGCATCAAATACAACACGGCACGGAGTGCTGACAGA
ACTCTCCTTCCAGACGGCACGCCAtggaatgaaattttggttggttgttt
CTCTCAGTGTTGATTGTTGCTCAGGTGTAAGGTTTTCGACATACTCAACG
TACTCAAGCTTTTGCAACTTGGCTTCCGATTCAAGGATGTCGGctttgtc
tttgttgttctcTGGACGATCAAGTTTCTTCAGTTGTTGATAATAGATAC
GAGAAGCAATGTCTTTGTTGGGAGCGAGCTTTGATGGTCTGTCGATAAAG
GGTAATTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034819XLOC_034819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055276-exon-scaffold_251-1491911889:640289..640849TCONS_00055276-exon-scaffold_251-1491911889:640289..640849Clytia hemisphaericaexon
TCONS_00055276-exon-scaffold_251-1510915933:640289..640849TCONS_00055276-exon-scaffold_251-1510915933:640289..640849Clytia hemisphaericaexon
TCONS_00055276-exon-scaffold_251-1575043694:640289..640849TCONS_00055276-exon-scaffold_251-1575043694:640289..640849Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055276-proteinTCONS_00055276-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:640289..640849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09147	1.95411	1.06454	0.558236	2.41109	1.47547	0.973432	2.0059	0.7067	0.926983	0.254062	0.84445	0.42747	0.587362	0.0654839	0.618154	0.302648	0.851597	0.336857	1.53185	0.22336	0	0.115563	0.323555	2.53962	2.81708	0.615779	0.189402	2.80773	2.84041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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