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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055237 ID=TCONS_00055237|Name=TCONS_00055237|organism=Clytia hemisphaerica|type=transcript|length=912bp
CAACTAAAACAATTAAATATGAACCCAAGTCCTGCACGTTTCGAATTTAT
GATGAAAGTGATGTTTTACAGAAAACAATGGTCCAAGATACATGTGCTTA
TAtggAGGTTGAGAAGTTGGTTGGACGATACGATAAAGGTACCATCTTTA
AAAGTAAATTTGGTTTAAAAGATGGATTCAAAATGCAAGTCAAAGGAGCA
GAAGGCGTTATGTTGAATGGAGATATTGTAGACGATAACTCACTATCTGG
TCCTGATTCACTGAAGATTACAACCTTTCCTGGGAATATGTTTATGGTCG
GAGGAAATACAAATTGTACCATAACCCTTTGGAAACTCCCGATTACATCA
TTCGTGACCTCTATCTGGACCAGGAACGAATGTCTGCCAGCATCAACATG
ATCAAATATCACTCAGCTTATATAATAAACCCTGGAGGCAGTTTCTTAAT
CCccagcaaagaaaaatatttctttaaaagtAGTGGTACCCCTGATAACA
CTATTCGATACTTAGTGATGTAAATGCATcaagagcgctagatctacttt
tcctctgATACttgtgatgtagcgccgtttgactTTAAATtctaacactg
caatggcttctttgtggGTACAACTTAAAGGCCGATCTCCACTTGCGCag
gcttcgatcgcactttttcgagcaaagcttccacgccattagtcaaaaga
aaaatgaagcaactcaaTTGCCGCGATCTGACATAacgtttgaaaaaagt
tgaaatgtgttcaacttttttttcgagcgtgcgctacatttttatgacgt
aaaaAGGTGCGATCACAGCGCAcgcaagtggagaccagcctttaactttc
aaaactctgatcaaagCTGACAGATGTCATTTTGTCCATGGTTTATAATA
AGGTCAGTggat Run BLAST on NCBI protein sequence of TCONS_00055237-protein >TCONS_00055237-protein ID=TCONS_00055237-protein|Name=TCONS_00055237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TKTIKYEPKSCTFRIYDESDVLQKTMVQDTCAYMEVEKLVGRYDKGTIFK
SKFGLKDGFKMQVKGAEGVMLNGDIVDDNSLSGPDSLKITTFPGNMFMVG
GNTNCTITLWKLPITSFVTSIWTRNECLPAST Run BLAST on NCBI transcript from alignment at scaffold_251:670693..672362- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055237 ID=TCONS_00055237|Name=TCONS_00055237|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at scaffold_251:670693..672362- (Clytia hemisphaerica)
CAACTAAAACAATTAAATATGAACCCAAGTCCTGCACGTTTCGAATTTAT
GATGAAAGTGATGTTTTACAGAAAACAATGGTCCAAGATACATGTGCTTA
TAGTAAGTAAAGGCCGATCTCCACTTGCGCGCACTTTGATTGCACTTTGT
CGAGCAAAGCTTCCACGCTATTGTTCAAAAGAAAAATGAAGCAACTCCCG
TTCGGCGATCTGACGTAACGGTTGAAAAAAGTTGAAATGTGTTCAACTTT
TTTTTTGAGCGCGCTCTACACTTTTATGACGTAATATTTTTTCCATAAAG
CAAAAAGGATTGAAAGCCAAAAGGTACGATCGCAGCGCGCGCAAGTGGAG
ACCGGCCTTAACGCGGAAAATTTAGGTCATCTAATGACGTAGTCAGACCT
CCTTTACTTAGAGCGTAAAACTTGTATAAGATCTAAAAGTCAGCAAAATT
ACTTGATCAAAAAGACGATGTTATCGTCCCGTTACAGGGATAATAAAGGC
AGGAAAAAATATATATATGCGCAGAGTTTACAGCCGTTATGGTGGTATAC
GGAAAAAATCCACAGCTGCAAACTCTTTTCGGGAAAAAAACTATTGCGAA
TTTCCTCAGCTTTGGGATTTTATCTTAGTGACTTGTCTTCGAATATAGCA
TAGTCTAGACCAAGATATCCAATTTCACAAAATATTGCTTCCAAAACATT
AAATAAAACTAGCAGATTCGAGTTGAGGTAGAGTTTTTCAGGTTTAATTT
CTTACCTGGCAGAAACTTTCGCTAAAAAGAATAAAAATTGCGAAAATCGC
GAAAGTTTCTGCGCCGCGAAAGTTTCTGCCCTTAACCGATTCATCTTTTT
AATTTTTCAGTGGAGGTTGAGAAGTTGGTTGGACGATACGATAAAGGTAC
CATCTTTAAAAGTAAATTTGGTTTAAAAGATGGATTCAAAATGCAAGTCA
AAGGAGCAGAAGGCGTTATGTTGAATGGAGATATTGTAGACGATAACTCA
CTATCTGGTCCTGATTCACTGAAGATTACAACCTTTCCTGGGAATATGTT
TATGGTCGGAGGAAATACAAATTGTACCATAACCCTTTGGAAACTCCCGA
TTACATCATTCGTGACCTCTATCTGGACCAGGAACGAATGTCTGCCAGCA
TCAACATGATCAAATATCACTCAGCTTATATAATAAACCCTGGAGGCAGT
TTCTTAATCCCCAGCAAAGAAAAATATTTCTTTAAAAGTAGTGGTACCCC
TGATAACACTATTCGATACTTAGTGATGTAAATGCATCAAGAGCGCTAGA
TCTACTTTTCCTCTGATACTTGTGATGTAGCGCCGTTTGACTTTAAATTC
TAACACTGCAATGGCTTCTTTGTGGGTACAACTTAAAGGCCGATCTCCAC
TTGCGCAGGCTTCGATCGCACTTTTTCGAGCAAAGCTTCCACGCCATTAG
TCAAAAGAAAAATGAAGCAACTCAATTGCCGCGATCTGACATAACGTTTG
AAAAAAGTTGAAATGTGTTCAACTTTTTTTTCGAGCGTGCGCTACATTTT
TATGACGTAAAAAGGTGCGATCACAGCGCACGCAAGTGGAGACCAGCCTT
TAACTTTCAAAACTCTGATCAAAGCTGACAGATGTCATTTTGTCCATGGT
TTATAATAAGGTCAGTGGAT Coding sequence (CDS) from alignment at scaffold_251:670693..672362- >TCONS_00055237 ID=TCONS_00055237|Name=TCONS_00055237|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_251:670693..672362- (Clytia hemisphaerica)
TGGAGGTTGAGAAGTTGGTTGGACGATACGATAAAGGTACCATCTTTAAA
AGTAAATTTGGTTTAAAAGATGGATTCAAAATGCAAGTCAAAGGAGCAGA
AGGCGTTATGTTGAATGGAGATATTGTAGACGATAACTCACTATCTGGTC
CTGATTCACTGAAGATTACAACCTTTCCTGGGAATATGTTTATGGTCGGA
GGAAATACAAATTGTACCATAACCCTTTGGAAACTCCCGATTACATCATT
CGTGACCTCTATCTGGACCAGGAACGAATGTCTGCCAGCATCAACATGAA
CTAAAACAATTAAATATGAACCCAAGTCCTGCACGTTTCGAATTTATGAT
GAAAGTGATGTTTTACAGAAAACAATGGTCCAAGATACATGTGCTTATAT
GGAGGTTGAGAAGTTGGTTGGACGATACGATAAAGGTACCATCTTTAAAA
GTAAATTTGGTTTAAAAGATGGATTCAAAATGCAAGTCAAAGGAGCAGAA
GGCGTTATGTTGAATGGAGATATTGTAGACGATAACTCACTATCTGGTCC
TGATTCACTGAAGATTACAACCTTTCCTGGGAATATGTTTATGGTCGGAG
GAAATACAAATTGTACCATAACCCTTTGGAAACTCCCGATTACATCATTC
GTGACCTCTATCTGGACCAGGAACGAATGTCTGCCAGCATCAACATGAAC
TAAAACAATTAAATATGAACCCAAGTCCTGCACGTTTCGAATTTATGATG
AAAGTGATGTTTTACAGAAAACAATGGTCCAAGATACATGTGCTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055237-exon-scaffold_251-1575043694:672261..672362 | TCONS_00055237-exon-scaffold_251-1575043694:672261..672362 | Clytia hemisphaerica | exon |
| TCONS_00055237-exon-scaffold_251-1575043694:670693..671502 | TCONS_00055237-exon-scaffold_251-1575043694:670693..671502 | Clytia hemisphaerica | exon |
| TCONS_00055237-exon-scaffold_251-1510915933:672261..672362 | TCONS_00055237-exon-scaffold_251-1510915933:672261..672362 | Clytia hemisphaerica | exon |
| TCONS_00055237-exon-scaffold_251-1510915933:670693..671502 | TCONS_00055237-exon-scaffold_251-1510915933:670693..671502 | Clytia hemisphaerica | exon |
| TCONS_00055237-exon-scaffold_251-1491911889:672261..672362 | TCONS_00055237-exon-scaffold_251-1491911889:672261..672362 | Clytia hemisphaerica | exon |
| TCONS_00055237-exon-scaffold_251-1491911889:670693..671502 | TCONS_00055237-exon-scaffold_251-1491911889:670693..671502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:670693..672362 - |
Blast
The following BLAST results are available for this feature:
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