TCONS_00055165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055165
Unique NameTCONS_00055165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=406bp
TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG
GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA
ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG
TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA
TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA
AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT
GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA
TTGGAT
Run BLAST on NCBI

protein sequence of TCONS_00055165-protein

>TCONS_00055165-protein ID=TCONS_00055165-protein|Name=TCONS_00055165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AKSPLNQTGVWENCDDEKRYICQVSNNIGNGSWTSWASTTNCSEPCGGGN
YTQQRTYKMNEQCEEESGFEERYPDCNTQSCQDVTHFMSTNEEMFNNASK
DCETKGGRLAIFPEKSDWESFINESRIEDDSQYW
Run BLAST on NCBI

transcript from alignment at scaffold_251:434430..438854+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=4425bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica)
TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAGTAAGGTCTTCTTCGCTAC
GGTCGTGATTAGATCTCGTTTAAAATGATGAATCTTCAAAGCAGATTTAG
TATCTGCGGCCTTCTATAAACATTTCGTATGTGTAATAGtcatcggacag
ttgcgagtacaataggagaaatattttacgagttccgatatttttccgta
caatatatataatattaaaatatacggaaaatccggaacgagtgaaatat
ttcttatattgtacgagcaaatgtctgataactagTTTATcggtagcgag
cacctcactaaaaaccgggatttttcatctcgtttcttagtgagttccac
tttgacgattttcgaaaaatagaagcctttcaagtgtttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNacattcgaaaaagtcgcaaagtggaatagacgttaat
tgcgtaaaaaaacgcggggTGACGGCTAGTATAGGCtagtttatcggtga
cccaaaaaactttttgtgttggaaaaaagcgcaggacacttttgtagcaa
agtgacatTAGATTGcctctaccgctacaatgcaacaacatcttttcgtc
aatttatattttgtacatgtaaaatacaagatatattgtactctttttaa
ccaatcaaattgctgatattttttggatcgccgataaaatgTCAtaatgt
acactttttttttataagaatacactttataagaatgttcatgatgaaaa
tggccaaaaaattaagaatatgctaagaatatcaccatcatggaattttg
ctactcaagctatataaagaatgccatttttagagcattttcaattataa
attatcaattacccccaagtaaggctcactcctttcaaaAAATGccatct
tatgcttgagacgtgtGTAccaaatgttaaatctagtctgagtTAGAACC
CTAGCCTAAGAATATGCTGTAGGATGAgtttaagatgattttcccaaaaa
agttaagaatatctatgatgaaatgggtttacaccattcttataaaaaaa
agcgtgtaaaggCTGTCTCTacaaatcataaaataaaaataaaaattgaa
cgTATAtacccaactggcacacaacgttgtttcaacgtttatctaacgtt
tgCCACGTCTATATAAttttagatgaacgttgaaacaacgttgtgtgtca
gctgggtaacAATTTCAAGAAAACTGCTTAGTTACTTTCCAATAGTTAGA
TTTGTTACCATTCAAAATAATTGCCAATTACGTTGAGTGCTATTTATTTC
GTGTTGATATAGACATTGGTAATGGTAGTTGGACATCATGGGCCTCCACA
ACAAATTGCTCAGAGCCCTGTGGAGGAGGGAACTACACACAACAGAGGAC
ATACAAAATGAATGAGCAATGCGAAGAAGAGTCTGGTTTCGAAGAAAGAT
ATCCTGATTGCAATACACAGTCGTGCCAAGGtcagttttattttcaacag
ttttttaACTcgctctctcttattcgatcttAAAGGGACCAAcaaatttc
ttcgaattagagaaggaTTGGAATTACAGAGAGAATGAAATACTACcttc
cagctgaggggaccaatgttttagtttgaattattcatgatatgtcttcc
aagattttttaaaaagttcaacccaatacgtcactttttctattgtttaa
gtgacgtattgggttgaactttatgaaaattctcagaagactctccagtg
ttgcatatcatgaatagaggtTTGGAATAGATAGAGTTGACTGTACTCCT
AAAGTGATATGAAAGCTGTCATTTCAGGGAACTTGCTGATGGTCACTTGT
CTCCAGACCGAGTTGATGTTTTCTGTTAATCTGGGGggactagggttgcg
agctgacggggggtaccgcctgactttcgaccctcggatcCTTACcgaga
ctaaaaaggagaaaacaaagaacaattttgtgaattttacgacccttacc
ggaccaaatttgaccaattttgaccaaattgcgctctttctgggggtaaa
aagttgaaattttcctatttctcctacccttagtgggactgaaatttgat
tttctgatttttccgacccttagcgggacttttgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttg
gtaggatttgaagccaacaaatcctaccaaagttgcgcggccttgagcga
cccgcctggtttttacacaaatgacagattgaaactaagatttaccgctt
aattttgaaaaatatatcactcgaaaataaaggaattgctagattcaatc
cgtcatcaaaaatacggcgcatgttttaaggcttcaatttttcttacctg
agaaaggttagagattgacctctagcccttcgggcttgaaactcaatggg
cggcacataccgtaccctccatttacccaagtacccccccccccgggNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcccccccccccggggttaaTCTCGAGTGAAATGAGATTTAAAATAA
AGTCTGTTAAAGTCTTATTTTAAAGGTCACTCTATGATACTTTCACATTA
TGTAATTCATGATAttgatgacgtaatgttttctacggaattACACCGGT
TTTTGCGCCAGTAGTGACAAATTTTAAACAACTTTTGtatagtttaaatt
tgccactactggctaaaaccggggtatttccgtagaaaacattacgtcat
gaatatcatgattAGACTTACTCtttatgattttctttttgggTTTTATT
AGCTTCTTTTACTTTCCCAATTTTAGATGTCACTCACTTTATGTCTACCA
ATGAAGAAATGTTTAACAATGCTTCGAAGGATTGCGAAACAAAAGGAGGC
AGACTGGCAATATTCCCTGAAAAGTCTGATTGGGAAAGTTTTATCAAGTA
CGTTTGTTCAGACTACGTGTTGTTCCTGTTTTTtagcactttgagcctca
aattgttctcatCCCCGTTCGtaggaaaattattattttcattcTACTCT
TACTGATTTGAACTTGAAATTTAGCAATTTCAGTCttaggattgttctta
aattgtccTCATTTTTGTCATTTCAAGCCccactgttcttataaaattgt
gcTAATAAAAAAAGGTTGTATTATGTTACCTTTAAAACGCATGAAATGAT
TGGTTGCATCATAAGGTATTTTGTTTGCCCCAAGTTAAAAGGGTTAAGGT
TTTTAGGTGAAAATGACTTTGTCTGTTACGCTATCAGTTTATACCTAGAT
CAAATTTCTCGTCATCTGTTATATTGgttgttaagttacgtaatctcgct
gacctttatatatccctggaccaagctataccCGCCATCTTTGaacgaag
tttttttgaaagttgatacccgaaaagaagccattgtagtgtttaaAACT
TTGCCTAgcgacaaacggcgctacatcattagtgtagaagcgaaactaga
tctagcgctctctccgcgggtaccaatttcaaaaaaaactccgatcaaag
attttgcttggccggcattgagtaacttgatccagggatatataaaggtc
agagCGTAATCTCCACCAtaatggaagcaaacgttcgatttgcgcctctt
cagattcgaacgtttgcttctaTAATGGCGGGAATCTTTCTCTATGGGCA
TCGTGTAACTTGAccaaaaattattattattggtTAATTATTATCCACCT
CTTTATCCTTTTGTTATTCTTATGTTATTCTTATTCCAGTGAATCAAGAA
TTGAAGACGATTCTCAATATTGGAT

Coding sequence (CDS) from alignment at scaffold_251:434430..438854+

>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica)
GCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGATGA
AAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTGGA
CATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGAAC
TACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAGTC
TGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGATG
TCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGAAG
GATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCTGA
TTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATATT
GGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG
GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA
ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG
TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA
TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA
AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT
GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA
TTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATG
ATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGT
TGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGG
GAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAG
AGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAA
GATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTC
GAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGT
CTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAA
TATTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGA
TGATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTA
GTTGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGA
GGGAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGA
AGAGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCC
AAGATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCT
TCGAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAA
GTCTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTC
AATATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034750XLOC_034750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055165-exon-scaffold_251-1491911889:434430..434510TCONS_00055165-exon-scaffold_251-1491911889:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:434430..434510TCONS_00055165-exon-scaffold_251-1510915933:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:434430..434510TCONS_00055165-exon-scaffold_251-1575043694:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:436092..436259TCONS_00055165-exon-scaffold_251-1491911889:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:436092..436259TCONS_00055165-exon-scaffold_251-1510915933:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:436092..436259TCONS_00055165-exon-scaffold_251-1575043694:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:437856..437976TCONS_00055165-exon-scaffold_251-1491911889:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:437856..437976TCONS_00055165-exon-scaffold_251-1510915933:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:437856..437976TCONS_00055165-exon-scaffold_251-1575043694:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:438819..438854TCONS_00055165-exon-scaffold_251-1491911889:438819..438854Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:438819..438854TCONS_00055165-exon-scaffold_251-1510915933:438819..438854Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:438819..438854TCONS_00055165-exon-scaffold_251-1575043694:438819..438854Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055165-proteinTCONS_00055165-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:434430..438854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.253326	0	0.485723	0.383825	1.15767	0.650279	0.910551	0	0.547366	0.959512	5.06895	7.26505	3.06783	3.91304	0.730704	1.07175	2.1577	9.83068	0.395964	0.465423	0.261428	0.375455	3.67374	1.20795	1.72857	0.26354	0.399772	0.372009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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