TCONS_00055161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055161
Unique NameTCONS_00055161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055161 ID=TCONS_00055161|Name=TCONS_00055161|organism=Clytia hemisphaerica|type=transcript|length=661bp
CGCATTAACACCAACTTCTCAGCGGCCATCCATCCGTCCTCCTTCAAACA
CGATTTGGATTCGTACCTCAAGACTCGTGCACCTGTCACCTTCCTCTCTG
AATTGAGAAGCCATTTGCAGACTGGAAACGACCAGAGCAACAGGTACAAC
GTGCCTCTGATGAACGCGCTTGTGTTATACGTTGGTACACAGGCTATCGC
TTACATCCAAAACAAGAGCAGTACGACCTCCATTGCTACCATCACTCATT
CATCACATATGGATATCTTCCAAAATCTTGCTGTCGATTTGGATACCGAA
GGACGTTACTTGTACTTGAACGCGATAGCCAATCAGCTGCGTTACCCGAA
CAGCCACACCCATTACTTCAGCTGTACACTGCTCTACTTGTTCGCCGAAG
CAAACTCCGAAGCTATCCAAGAACAAATCACAAGAGTTTTGTTGGAGCGT
TTGATTGTGAACAGACCTCACCCATGGGGTCTCTTGATCACCTTCATTGA
GTTgatcaaaaatcacaattacAAGTTCTGGAGTCACGACTTCGTACACT
GCGCACACGAAATTGAAAAACTGTTCGAATCAGTAGCTAGAAGTTGCATG
CAACAAAAACAACCCTCCTCGAGAACTGAAAACGAGGCTACTGACGGTTG
AACAAAACCTC
Run BLAST on NCBI

transcript from alignment at scaffold_251:368516..372852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055161 ID=TCONS_00055161|Name=TCONS_00055161|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at scaffold_251:368516..372852+ (Clytia hemisphaerica)
CGCATTAACACCAACTTCTCAGCGGCCATCCATCCGTCCTCCTTCAAACA
CGATTTGGATTCGTACCTCAAGACTCGTGCACCTGTCACCTTCCTCTCTG
AATTGAGAAGCCATTTGCAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggggtacta
cggAAAGTGTTCTCAAAGTCTTCAGTGAAATTTtttatcacaggaaaaaa
ttttgattcCCGAGGCTATTAAAATGTATACTTCCGGATCTGGAAATTTT
AAGGGCTCTTTTTAGCTAAAGGTGtaagaaaatttgttcgagtcgAAGAG
AACTCGTGGTATAGTGAGTATATGGAGACTCTTTTTCGTCTAGACTGGAA
ACGACCAGAGCAACAGGTACAACGTGCCTCTGATGAACGCGCTTGTGTTA
TACGTTGGTACACAGGCTATCGCTTACATCCAAAACAAGAGCAGTACGAC
CTCCATTGCTACCATCACTCATTCATCACATATGGATATCTTCCAAAATC
TTGCTGTCGATTTGGATACCGAAGGTATAGATTTGAATACTTtaagagca
gaaactttcgcgaggttgcaaaatcgcgaaatttcgcgaatttaactGTC
GCGAATTTTACTTTTGGAACGAATTCAGAGGATATAACTTTCGTGAGTTT
TAGAATGTTATTTCATTTTGCAGGCAAATAAGCgagaaaaatgcacaaaa
actgaaaactgagtATAAAATAGCAAAGGTGTACTTTTCgtggaaaaaac
tttcgcgaatttctcgtgtaatttcttacttggcagaaactttcacgaaa
aagggcaaaaatcgcgaaagtagATAGggttgatatttttaaataatagc
CCAATTAATCTAGGGCTTTAAAACAGTGATTTGATTATTTCTGGCAAAGA
CTGGgtgtttccgtagaaaacattacgtcattaatatcatgaattggtCC
AATCAATAAAACGTTTACATTTTCTATATTTAGGACGTTACTTGTACTTG
AACGCGATAGCCAATCAGCTGCGTTACCCGAACAGCCACACCCATTACTT
CAGCTGTACACTGCTCTACTTGTTCGCCGAAGCAAACTCCGAAGCTATCC
AAGAACAAATCACAAGGTAAGAacaagatattcatgttttctTCATAAGT
AttgcgcttataagcatatctaggctcagatatggcaaaCATTTAAAAGC
ATTGTTAAGCATTACCTAAACTTACATTTCCTGATTTTGCCTGTtttttt
acggattttcagaaTCATCTAACCACCTTTCATAAGCATCCTTATAAGCA
TATTTCAGCCTTGTCAAGCCCTCGACCTGAGCATCTCCGAGCCTGTTTTT
GAATTTGTGTAGCGATTTACCAATTCAACTGCCAATTGTTAAAAGATCCA
TGGAAAGGGGTTGACTGGCTAGAGTTTACCAGGGTCAAGTGCTATCAAGT
TTCTTAACTTTTGCATACATGCGAGACACAGGCGTATCATTTATCCTGGT
GAATTTGAGCTTAATCACCCTCTGGTGTTAGGATTGAATTAGATCATCAG
GGTTAATATAGTATGTTTATTGTTATGAACGCTCGAATGATTTTGGTTTA
AATGAATGATCTTAACGATCATATGCTATGTTATGTTTTCTGTTTCTCGA
GCTCTTCTTGATATCCTTTCTGATTCAAATGCAAGAATTTCTTTAAATGA
AACAGGTAAATGTAAATGGAACAAGGATTGTCTTTTTATTAAAGAATGGC
TCgtcttctttgttttctttccaGAGTTTTGTTGGAGCGTTTGATTGTGA
ACAGACCTCACCCATGGGGTCTCTTGATCACCTTCATTGAGTTgatcaaa
aatcacaattacAAGTTCTGGAGTCACGACTTCGTACACTGCGCACACGA
AATTGAAAAGTAAGTGGCTTTATTCCATACCAGTATTTTATGGATATTTA
TTTTGAGGATAGGTTTTGGCTGAGATAAATTAAATCCTCTGTAACTTTTG
AGTAAGTGATCTGAAAAAACATATTGAAATTATACCATGTAAGAAATTTT
GTCAAGGTTTGTGAGGTCTTTTATACAACTTTGGTTGAATCAAGTTCACT
TTTTGAAATCAATCTTTTTGTAAAACCAAGTTTGTCAAAATGTGTTTGCG
TCTCAATCTTACAGCTAATTGTTAACTTATTGTATTCTCCTTTCAGACTG
TTCGAATCAGTAGCTAGAAGTTGCATGCAACAAAAACAACCCTCCTCGAG
AACTGAAAACGAAGCTACTGACGGTTGAACAAAACCTCGAAAAATCCTCG
AAAAACCTCGAAAATGTAAAAAGTCCTTCGTAAGCAAGAAGGGAGCAGAT
TACCAGAGCCTTGTAACCTCGTAACTGAATGAAATAAATATCGAAACTTG
TCGTTAGTAACAAGTCGATTCACAAATTTCTTGTGGATATTTTGTAAATA
GTATAAAAGAAACAGACAATAGACAAACATTACACTGGTTGACTACATGT
AGAATATTATAGGATTGAAGTTCTGATTATTTTGACACAATCTTGTGGAT
GAACCCTACCGTTGTACCGTCTTGGACAAATATTACACAGGTTGATTACA
TGTCGTACCGTTGTAGTCCTGGTCATTACACAATGTTGGAGGAATCGTAG
CGTACCGTCTTGGAAATCGATCATGTAttcagattgacttcaatgGAGAT
TCATCAATCCCTCTATGGAGTGGAAAATGGAATTATCTCCAAAAGTTATT
CAaatcatttttactttttatcacACTTTGGAATCTTCTCTCTTAAGCCT
GTTAATTCAGTAAAATGACACTTCTAAGAAGATTGTGCCAATGTTTCGTT
CTTATTTCTAAGCTTCTTACAATCAGttgcattttaatttttgtgttgGA
CTGAAAGCAAATAGAGCTTTATGGGCTACAGTACGGAACCAAAGTATTTT
ACGGTGAATTTGAATATTATATGAAATATATTatgactttcatttttttt
tgatttgtaaaaAACTGGCTTTTTTTACAGATAGTTTGTCACATTGTTAT
ATTGGTATGCAGTTAGTTAGAggttattttttagaaaaacttcaaaagaa
aCCAAGAGCTACTATTATGCATGAgtagttttttttcattcagtttatga
cataatttttatcaaaaataaaactttttctcttATTAAATATTCCTTTC
TTTTTCATTGTTTAGTAGTAGAGTAACGCTTCCCCTCGACATTTGACTGC
CCTAAACATTTGACTGAAACTTGGTACAGGGACCGTTTAGGTCCGAAGGA
AGAACGCCCACAAAGCCCTCAACAGACAGTTATTATTTTCGCACATGGGA
GGTGAAGGATACATAGGAAATATTGTCCGGGTTagtgaaaaatttacaaa
atgaatgttcggggggtcaaaagtcacaatttCCGAtaggtaatttttca
aaaaatgttatatccccacccccaatattcaattttttttctgcaagAGC
CCATAATGAAAGTTCTATAGTTTTCTACCAGAATCCTAGAAAAAAGGTTT
ATACACTTTTCAATAATCAATGAAAAAGGCGTaagtaaaactttcaaaac
ctaTTTTTACTCAATCcaatattgttttatttttatttagtgagtttgtt
tcaacattcaatttGGTGGTgcttttttgcaaagttttcgGACCTTTTTT
TANTGGGGTCTCTTGATCACCTTCATTGAGTTgatcaaaaatcacaatta
cAAGTTCTGGAGTCACGACTTCGTACACTGCGCACACGAAATTGAAAAGT
AAGTGGCTTTATTCCATACCAGTATTTTATGGATATTTATTTTGAGGATA
GGTTTTGGCTGAGATAAATTAAATCCTCTGTAACTTTTGAGTAAGTGATC
TGAAAAAACATATTGAAATTATACCATGTAAGAAATTTTGTCAAGGTTTG
TGAGGTCTTTTATTGAACTTGTTACAACTTTGGTTGAATCAAGTTCACTT
TTTGAAATCAATCTTTTTGTAAAACTAAGTTTGTCAAAATGTGTTAGCTT
CTCAATCTCACAGCTAATTATGAATTTATTGTATTCTCCTTTCAGACTGT
TCGAATCAGTAGCTAGAAGTTGCATGCAACAAAAACAACCCTCCTCGAGA
ACTGAAAACGAGGCTACTGACGGTTGAACAAAACCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034747XLOC_034747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055161-exon-scaffold_251-1491911889:368516..368635TCONS_00055161-exon-scaffold_251-1491911889:368516..368635Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1510915933:368516..368635TCONS_00055161-exon-scaffold_251-1510915933:368516..368635Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1575043694:368516..368635TCONS_00055161-exon-scaffold_251-1575043694:368516..368635Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1491911889:369009..369189TCONS_00055161-exon-scaffold_251-1491911889:369009..369189Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1510915933:369009..369189TCONS_00055161-exon-scaffold_251-1510915933:369009..369189Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1575043694:369009..369189TCONS_00055161-exon-scaffold_251-1575043694:369009..369189Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1491911889:369649..369781TCONS_00055161-exon-scaffold_251-1491911889:369649..369781Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1510915933:369649..369781TCONS_00055161-exon-scaffold_251-1510915933:369649..369781Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1575043694:369649..369781TCONS_00055161-exon-scaffold_251-1575043694:369649..369781Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1491911889:370440..370574TCONS_00055161-exon-scaffold_251-1491911889:370440..370574Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1510915933:370440..370574TCONS_00055161-exon-scaffold_251-1510915933:370440..370574Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1575043694:370440..370574TCONS_00055161-exon-scaffold_251-1575043694:370440..370574Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1491911889:372761..372852TCONS_00055161-exon-scaffold_251-1491911889:372761..372852Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1510915933:372761..372852TCONS_00055161-exon-scaffold_251-1510915933:372761..372852Clytia hemisphaericaexon
TCONS_00055161-exon-scaffold_251-1575043694:372761..372852TCONS_00055161-exon-scaffold_251-1575043694:372761..372852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:368516..372852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6864	6.24016	33.5521	29.4927	33.1611	20.3989	13.8647	21.1771	7.78162	11.7246	12.8301	8.78405	12.3724	18.983	16.1101	22.0159	13.993	18.4482	6.70622	8.71323	9.73712	7.07005	12.1163	14.3018	15.9319	15.5462	3.30235	4.83289	14.6114	15.5103
Blast
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BLAST of TCONS_00055161 vs. Swiss-Prot (Human)
Match: CNOT1 (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.734e-100
Identity = 165/214 (77.10%), Postives = 185/214 (86.45%), Query Frame = 1 
Query:    1 RINTNFSAAIHPSSFKHDLDSYLKTRAPVTFLSELRSHLQTGNDQSNRYNVPLMNALVLYVGTQAIAYIQNKXXXXXXXXXXXXXXMDIFQNLAVDLDTEGRYLYLNAIANQLRYPNSHTHYFSCTLLYLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNHNYKFWSHDFVHCAHEIEKLFESVARSCMQQKQPSSRTENEAT 642
            RI TNF+  + P  FK DLDSYLKTR+PVTFLS+LRS+LQ  N+  NRYN+ L+NALVLYVGTQAIA+I NK ST S++TITHS+HMDIFQNLAVDLDTEGRYL+LNAIANQLRYPNSHTHYFSCT+LYLFAEAN+EAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN  +KFW+H+FVHCA EIEKLF+SVA+ CM QKQ     E    
Sbjct: 2163 RILTNFTG-VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGA 2375
The following BLAST results are available for this feature:
BLAST of TCONS_00055161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT11.734e-10077.10CCR4-NOT transcription complex subunit 1 OS=Homo s... [more]
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