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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055125 ID=TCONS_00055125|Name=TCONS_00055125|organism=Clytia hemisphaerica|type=transcript|length=1829bp
aaagcaacaacaacaacaacaatgatAGTCAACAGCTGAATGCATCTATC
CTTATGTCTATGTCAACACCATCCCAAGAATTCTTACCAACTCATCTAAA
ATCACCACCACTGGCTCTGTCCCCTGCTGTCGTGGATTTAAACGAAGAGT
TCGAATCGATCCTCAACACTGAAGGCTTAGATGGTCTACCTGACGTATTC
ACTACACCTGTACAATCTCTTGATCGAGGACAAGATGGAAGTGACAAAGA
GGTGACATCTGACATGATTCTTTCAAtctacaaaataaacaaatgtaTCA
TGGGTAAGATCGCCAGTCTCGAACACTTGCATCAAAGTACATTTGACCAA
ATAGTCAGTGGCATGAAGATCTTAAAGGACGAAGTTGAAGACATCACAAA
ATCCCAAAGTCTTATTAATTCTAAATTTGAGACTCAAGCAAAGGAGATTA
AAAACAtccagaataaaataaaatctatggcaactgaaaacaaacaaaag
gaTAATGAGATtgatcgaattaaagaaagactACGTAAACTAGAAGAGAA
GAATAAAGAAAGTAGATCAAAGATAAACGAGCTTGAGCAATATGGTAGAA
GGGAAATGCTCAACATTTTTGGGGTCCCCAGGAAAGACAATGAAAACACT
GATGACATTGTTTTTAACANAGAATAAAGAAAGTAGATCAAAGATAAACG
AGCTTGAGCAATATGGTAGAAGGGAAATGTTCAACATTTTTGGGGTCCCC
AGGAAAGACAATGAAAACACTGATGACATTGTTTTTAACATTGCAGACCA
ACTTGGATTTGACCTTTATGAAGACGACATTGAGGTAACCCATCGAACCT
CTACCAAACCAACCGCTCCGATTATTGTTAAATTCAATAATAGGAGACTT
AGAAATCTAATGTATGAGGCTCGTTGGGACCTCAAACGTATAACAACAAA
AGATCTTGGCTTTCTAGAGGAAAATAGCATCTTTTTTAATGAGAGTCTCA
CTGACacaaacagaacaatttttaaagatGCCTGGAGAAATCTCAAACAG
ACTAAATTATTTGATCGAGTTATTACTCAAAATGGAATCACGTATGCTTG
GAAAACTTACAATAAGAACACTAAAAGCGAAAAGAAAGTCATTCTCTCGC
AAAGTGATATCATAAAGTTAGTTCCAACCTCCTGattttctaatgttttt
attACACTTtgagtatatatttttttctttttacattatgCTATCTTCAC
ATTATTCCTATTTTTTAGCTCAGAATGGCCAGCCCTAATCTTGACTTTTT
ACGTGAGACATCAATTTGCCACGTCTGTAGGACCTGCGTCTTTGACAATG
GGGTTTTTTGTGAGATCTGCTACACGTGGCTTCATATTAAATGTATTAAA
ATCACACATAAACATTATAATCAACTTGCTAATTCACCACTACCTTATTA
CTGTCAAAGTTGTATTTCTAAAACCCTACCATTAACTGATGTAACTAATC
ATAGCCTTCCACTAGAAACCCTTAACTCCAATACAGTTAAAATCAACAAT
AAGACCTGTGAAGAATGCACTAAAATCATTGGTTATGATAAATTCATTCA
CTGTAAACTTGGTAACCATCTTTTTCATATAAAATGTTTACGTGACAGTA
AAAACNCGAAACGTcttataataaatttttaacaaaaataaaaaatgctt
ctGTTAAAAACATTAATGAAATCAACCGTAAAATTTGGTCATGTGATGAC
TGCTTAAACTTTCCTTTCCAGTGTTTAGAATCTAATGACATCATAAATGA
ACTCAAACCTATAACAAAGCCAATAACCC Run BLAST on NCBI protein sequence of TCONS_00055125-protein >TCONS_00055125-protein ID=TCONS_00055125-protein|Name=TCONS_00055125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
SNNNNNNDSQQLNASILMSMSTPSQEFLPTHLKSPPLALSPAVVDLNEEF
ESILNTEGLDGLPDVFTTPVQSLDRGQDGSDKEVTSDMILSIYKINKCIM
GKIASLEHLHQSTFDQIVSGMKILKDEVEDITKSQSLINSKFETQAKEIK
NIQNKIKSMATENKQKDNEIDRIKERLRKLEEKNKESRSKINELEQYGRR
EMLNIFGVPRKDNENTDDIVFNXE Run BLAST on NCBI transcript from alignment at scaffold_250:240430..242258 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055125 ID=TCONS_00055125|Name=TCONS_00055125|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at scaffold_250:240430..242258 (Clytia hemisphaerica)
GGGTTATTGGCTTTGTTATAGGTTTGAGTTCATTTATGATGTCATTAGAT
TCTAAACACTGGAAAGGAAAGTTTAAGCAGTCATCACATGACCAAATTTT
ACGGTTGATTTCATTAATGTTTTTAACagaagcattttttatttttgtta
aaaatttattataagACGTTTCGNGTTTTTACTGTCACGTAAACATTTTA
TATGAAAAAGATGGTTACCAAGTTTACAGTGAATGAATTTATCATAACCA
ATGATTTTAGTGCATTCTTCACAGGTCTTATTGTTGATTTTAACTGTATT
GGAGTTAAGGGTTTCTAGTGGAAGGCTATGATTAGTTACATCAGTTAATG
GTAGGGTTTTAGAAATACAACTTTGACAGTAATAAGGTAGTGGTGAATTA
GCAAGTTGATTATAATGTTTATGTGTGATTTTAATACATTTAATATGAAG
CCACGTGTAGCAGATCTCACAAAAAACCCCATTGTCAAAGACGCAGGTCC
TACAGACGTGGCAAATTGATGTCTCACGTAAAAAGTCAAGATTAGGGCTG
GCCATTCTGAGCTAAAAAATAGGAATAATGTGAAGATAGcataatgtaaa
aagaaaaaaatatatactcaAAGTGTaataaaaacattagaaaatCAGGA
GGTTGGAACTAACTTTATGATATCACTTTGCGAGAGAATGACTTTCTTTT
CGCTTTTAGTGTTCTTATTGTAAGTTTTCCAAGCATACGTGATTCCATTT
TGAGTAATAACTCGATCAAATAATTTAGTCTGTTTGAGATTTCTCCAGGC
atctttaaaaattgttctgtttgtGTCAGTGAGACTCTCATTAAAAAAGA
TGCTATTTTCCTCTAGAAAGCCAAGATCTTTTGTTGTTATACGTTTGAGG
TCCCAACGAGCCTCATACATTAGATTTCTAAGTCTCCTATTATTGAATTT
AACAATAATCGGAGCGGTTGGTTTGGTAGAGGTTCGATGGGTTACCTCAA
TGTCGTCTTCATAAAGGTCAAATCCAAGTTGGTCTGCAATGTTAAAAACA
ATGTCATCAGTGTTTTCATTGTCTTTCCTGGGGACCCCAAAAATGTTGAA
CATTTCCCTTCTACCATATTGCTCAAGCTCGTTTATCTTTGATCTACTTT
CTTTATTCTNTGTTAAAAACAATGTCATCAGTGTTTTCATTGTCTTTCCT
GGGGACCCCAAAAATGTTGAGCATTTCCCTTCTACCATATTGCTCAAGCT
CGTTTATCTTTGATCTACTTTCTTTATTCTTCTCTTCTAGTTTACGTagt
ctttctttaattcgatcaATCTCATTAtccttttgtttgttttcagttgc
catagattttattttattctggaTGTTTTTAATCTCCTTTGCTTGAGTCT
CAAATTTAGAATTAATAAGACTTTGGGATTTTGTGATGTCTTCAACTTCG
TCCTTTAAGATCTTCATGCCACTGACTATTTGGTCAAATGTACTTTGATG
CAAGTGTTCGAGACTGGCGATCTTACCCATGAtacatttgtttattttgt
agaTTGAAAGAATCATGTCAGATGTCACCTCTTTGTCACTTCCATCTTGT
CCTCGATCAAGAGATTGTACAGGTGTAGTGAATACGTCAGGTAGACCATC
TAAGCCTTCAGTGTTGAGGATCGATTCGAACTCTTCGTTTAAATCCACGA
CAGCAGGGGACAGAGCCAGTGGTGGTGATTTTAGATGAGTTGGTAAGAAT
TCTTGGGATGGTGTTGACATAGACATAAGGATAGATGCATTCAGCTGTTG
ACTatcattgttgttgttgttgttgcttt Coding sequence (CDS) from alignment at scaffold_250:240430..242258 >TCONS_00055125 ID=TCONS_00055125|Name=TCONS_00055125|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_250:240430..242258 (Clytia hemisphaerica)
TTATTCTNTGTTAAAAACAATGTCATCAGTGTTTTCATTGTCTTTCCTGG
GGACCCCAAAAATGTTGAGCATTTCCCTTCTACCATATTGCTCAAGCTCG
TTTATCTTTGATCTACTTTCTTTATTCTTCTCTTCTAGTTTACGTagtct
ttctttaattcgatcaATCTCATTAtccttttgtttgttttcagttgcca
tagattttattttattctggaTGTTTTTAATCTCCTTTGCTTGAGTCTCA
AATTTAGAATTAATAAGACTTTGGGATTTTGTGATGTCTTCAACTTCGTC
CTTTAAGATCTTCATGCCACTGACTATTTGGTCAAATGTACTTTGATGCA
AGTGTTCGAGACTGGCGATCTTACCCATGAtacatttgtttattttgtag
aTTGAAAGAATCATGTCAGATGTCACCTCTTTGTCACTTCCATCTTGTCC
TCGATCAAGAGATTGTACAGGTGTAGTGAATACGTCAGGTAGACCATCTA
AGCCTTCAGTGTTGAGGATCGATTCGAACTCTTCGTTTAAATCCACGACA
GCAGGGGACAGAGCCAGTGGTGGTGATTTTAGATGAGTTGGTAAGAATTC
TTGGGATGGTGTTGACATAGACATAAGGATAGATGCATTCAGCTGTTGAC
Tatcattgttgttgttgttgttgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055125-exon-scaffold_250-1491911889:240430..242258 | TCONS_00055125-exon-scaffold_250-1491911889:240430..242258 | Clytia hemisphaerica | exon |
| TCONS_00055125-exon-scaffold_250-1510915933:240430..242258 | TCONS_00055125-exon-scaffold_250-1510915933:240430..242258 | Clytia hemisphaerica | exon |
| TCONS_00055125-exon-scaffold_250-1575043694:240430..242258 | TCONS_00055125-exon-scaffold_250-1575043694:240430..242258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:240430..242258 . |
Blast
The following BLAST results are available for this feature:
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