TCONS_00055124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055124
Unique NameTCONS_00055124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055124 ID=TCONS_00055124|Name=TCONS_00055124|organism=Clytia hemisphaerica|type=transcript|length=437bp
ACTTTGTATATTAGGAGTTCTCCTGATTTCAGTGCAGTGCGCTTTTTGTT
GTTCATGCGAGAGGAATCCACTATCTTCATATTTTCGTCGAGTGAAACAA
TGGTACCGTAATTTCCCCTGTTCTCCCAACATCCATTATCATCTGCTGCC
CAGTCATTTGGGCTCTTCAATTTCttggtatcaataataaatgtAAAATT
ATCCTGAACTTTGACAGGCTTTTTTGTGGCCACCCTTGCACTTTTCCGAG
AAACAAGTATGTCGATGAGGGTTTGAGGAGAATATTCAATGTCCGAAGTG
ATCTTGAATATTGGAATGTTTTTGTTGTTCTTGTAATATTTCACATCTTC
ATCAGGCGGGCTCATGTAGCCAGCATCAATTTCGGCATTCTCAAAAGATT
CATTCACATTGTTTTCATTACTTGAAGATACAGTGTC
Run BLAST on NCBI

protein sequence of TCONS_00055124-protein

>TCONS_00055124-protein ID=TCONS_00055124-protein|Name=TCONS_00055124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
DTVSSSNENNVNESFENAEIDAGYMSPPDEDVKYYKNNKNIPIFKITSDI
EYSPQTLIDILVSRKSARVATKKPVKVQDNFTFIIDTKKLKSPNDWAADD
NGCWENRGNYGTIVSLDENMKIVDSSRMNNKKRTALKSGELLIYK
Run BLAST on NCBI

transcript from alignment at scaffold_250:222669..223105

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055124 ID=TCONS_00055124|Name=TCONS_00055124|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at scaffold_250:222669..223105 (Clytia hemisphaerica)
GACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGAA
TGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAAT
ATTACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGACATT
GAATATTCTCCTCAAACCCTCATCGACATACTTGTTTCTCGGAAAAGTGC
AAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacattta
ttattgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGAT
AATGGATGTTGGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGA
CGAAAATATGAAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCA
CTGCACTGAAATCAGGAGAACTCCTAATATACAAAGT

Coding sequence (CDS) from alignment at scaffold_250:222669..223105

>TCONS_00055124 ID=TCONS_00055124|Name=TCONS_00055124|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_250:222669..223105 (Clytia hemisphaerica)
GACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGAA
TGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAAT
ATTACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGACATT
GAATATTCTCCTCAAACCCTCATCGACATACTTGTTTCTCGGAAAAGTGC
AAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacattta
ttattgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGAT
AATGGATGTTGGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGA
CGAAAATATGAAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCA
CTGCACTGAAATCAGGAGAACTCCTAATATACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034732XLOC_034732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055124-exon-scaffold_250-1491911889:222669..223105TCONS_00055124-exon-scaffold_250-1491911889:222669..223105Clytia hemisphaericaexon
TCONS_00055124-exon-scaffold_250-1510915933:222669..223105TCONS_00055124-exon-scaffold_250-1510915933:222669..223105Clytia hemisphaericaexon
TCONS_00055124-exon-scaffold_250-1575043694:222669..223105TCONS_00055124-exon-scaffold_250-1575043694:222669..223105Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055124-proteinTCONS_00055124-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:222669..223105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.54437	2.9543	1.42445	1.64114	1.31283	0.530692	0.472944	0.221047	0.675148	0.386716	0.134919	2.76654	1.28164	2.21358	3.1515	1.62186	1.5609	0.995041	0	1.17039	0	0.276462	0.580781	1.01178	0.0627233	0.615596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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