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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055120 ID=TCONS_00055120|Name=TCONS_00055120|organism=Clytia hemisphaerica|type=transcript|length=1736bp
gttctttggaatagactaaaaatggctaggtcgtagaaaagatgtcacgg
aaccccaggcttggccccctactaaatgaaaattcctctgaaaaaacttt
ttcggccatctgccaaattaaattcccgccaaaatttcctaCTGTAAGGT
AGAGTGAGAATGTGACAAAATTGAATACAATTGTTTATGAAGCCGCTGTA
AGTGACTGATGAAATAAAATATACAAGCTAAACATAATATAAACTAaacc
aaaatattcaaaacctGAAGTCCCAGGCTGGTGATTTTGTTGAGTACCCA
ACAGCACTCAGTATCCCGCTTGGACACCAGAAGATACCAAAAAACAAAAG
TTCTAAACACTGAAAAACTGAATACTGAAATAAAAATTGGAACAGGAggt
aaatgttcttataaaaagaagagTGAATCTTCTTTATAACAgcaactgga
aaagaaaaacgaggctcaaaatggctaaaaaataagaacagttctGATGC
TCGACTAGGTTTAAAAAGTAAACATAGGAGCAGTTGGAGACTCAAATTTA
CTGGCTCTTATTTTTTTCTGGACATAAAGACGGAAAATATGATCATTTAT
TTGTATATACAACTATAGAAAGCTACACGTTCAAAAAAGATTCTTCAAAA
ATAATAATCTGAAGGAAAAAGAATCCTCACAAAATGAAGAATTCGTTTCA
ATTACAAATCTTTTTTGGAAGAGCTCATTTTAGTAAGGGAAGTTTTGCAG
CAAATCAATAGACtaattttgagtaaaatttaGTGTCAAACGTTAAAGAT
TTGAATACTAAACATGCAAAGTAGGTTTTAGATGtttaaattttgccttt
ccATTTCCGTAATGTCATCTGACCATGTGACCTCTCCACAAAATTTGACG
TTCGTCCAGGCTGGAGCCTTTCTTAAGCATTCTTTCATTGGACAGAAATA
CATGGCTGGTTTCAAGACTGCCCTTTCTGTGCCAAAAGGCACCCTCAGTG
CCCCTGAAACTTTAATGGTTAATTCACCAGGATTGAGCGATGCTTTACAT
CCCTGACACCTTGCAGTACGTAGCTCCTTGTGATGGATCAGGAATATTTG
AGGATTTGTAAACTGATGATGCATTCGAAGAATGGTTTTGTAATCTTTGC
CTGATGACGAGGGCTTTGTTGTGAAATATCTTTTATCGACAGTTGTCGAA
AGAatcgatgctaagttttggtcATTGATATGACGAGCAAACTGACATTC
ACCTTCCTTTTGGAGCGGAAACAAAATTACAAATATTATGTGCTTGCAGT
ACACCTTCATCCCGTTTTTCTTGAAGTCTGGGTAAGTACACGAGGGAACT
CTACAAATAATTACGGTATAGGAAACTTTGCCACTGGTGCTGCTTCGTAC
TTCAAAGACCCATTTCAAGTCTGTCTCCTTTTGTAAGGATAGCACCTTCA
TGGTTTCTTTCAGAGCTTTGGCCGTCTCGGTTCTATTTTTAAGCATATTG
CTTAAACGACTTTTCTTTGTAGGTGGATTTTTTGGGTTGCATGGTTCATT
GCTGGTACTTGGTGTCCTTTTTGTTTCTGGTTGTTGTAGACTGGAAACAC
CATAGTCCAGAATGTCGCCGCCAACCCTATTCGCTGCCTCGACTTGtctt
tgcttttttctttcCTCTAGTTGGCTTAATGATGGCCCGCGACCTTTTTT
ATAGACTCCACCTTCGAGGTCTTTAAGGTCTTGAAC Run BLAST on NCBI protein sequence of TCONS_00055120-protein >TCONS_00055120-protein ID=TCONS_00055120-protein|Name=TCONS_00055120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
VQDLKDLEGGVYKKGRGPSLSQLEERKKQRQVEAANRVGGDILDYGVSSL
QQPETKRTPSTSNEPCNPKNPPTKKSRLSNMLKNRTETAKALKETMKVLS
LQKETDLKWVFEVRSSTSGKVSYTVIICRVPSCTYPDFKKNGMKVYCKHI
IFVILFPLQKEGECQFARHINDQNLASILSTTVDKRYFTTKPSSSGKDYK
TILRMHHQFTNPQIFLIHHKELRTARCQGCKASLNPGELTIKVSGALRVP
FGTERAVLKPAMYFCPMKECLRKAPAWTNVKFCGEVTWSDDITEMERQNL
NI Run BLAST on NCBI transcript from alignment at scaffold_250:191201..192936 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055120 ID=TCONS_00055120|Name=TCONS_00055120|organism=Clytia hemisphaerica|type=transcript|length=1736bp|location=Sequence derived from alignment at scaffold_250:191201..192936 (Clytia hemisphaerica)
GTTCAAGACCTTAAAGACCTCGAAGGTGGAGTCTATAAAAAAGGTCGCGG
GCCATCATTAAGCCAACTAGAGgaaagaaaaaagcaaagaCAAGTCGAGG
CAGCGAATAGGGTTGGCGGCGACATTCTGGACTATGGTGTTTCCAGTCTA
CAACAACCAGAAACAAAAAGGACACCAAGTACCAGCAATGAACCATGCAA
CCCAAAAAATCCACCTACAAAGAAAAGTCGTTTAAGCAATATGCTTAAAA
ATAGAACCGAGACGGCCAAAGCTCTGAAAGAAACCATGAAGGTGCTATCC
TTACAAAAGGAGACAGACTTGAAATGGGTCTTTGAAGTACGAAGCAGCAC
CAGTGGCAAAGTTTCCTATACCGTAATTATTTGTAGAGTTCCCTCGTGTA
CTTACCCAGACTTCAAGAAAAACGGGATGAAGGTGTACTGCAAGCACATA
ATATTTGTAATTTTGTTTCCGCTCCAAAAGGAAGGTGAATGTCAGTTTGC
TCGTCATATCAATgaccaaaacttagcatcgatTCTTTCGACAACTGTCG
ATAAAAGATATTTCACAACAAAGCCCTCGTCATCAGGCAAAGATTACAAA
ACCATTCTTCGAATGCATCATCAGTTTACAAATCCTCAAATATTCCTGAT
CCATCACAAGGAGCTACGTACTGCAAGGTGTCAGGGATGTAAAGCATCGC
TCAATCCTGGTGAATTAACCATTAAAGTTTCAGGGGCACTGAGGGTGCCT
TTTGGCACAGAAAGGGCAGTCTTGAAACCAGCCATGTATTTCTGTCCAAT
GAAAGAATGCTTAAGAAAGGCTCCAGCCTGGACGAACGTCAAATTTTGTG
GAGAGGTCACATGGTCAGATGACATTACGGAAATggaaaggcaaaattta
aaCATCTAAAACCTACTTTGCATGTTTAGTATTCAAATCTTTAACGTTTG
ACACtaaattttactcaaaattaGTCTATTGATTTGCTGCAAAACTTCCC
TTACTAAAATGAGCTCTTCCAAAAAAGATTTGTAATTGAAACGAATTCTT
CATTTTGTGAGGATTCTTTTTCCTTCAGATTATTATTTTTGAAGAATCTT
TTTTGAACGTGTAGCTTTCTATAGTTGTATATACAAATAAATGATCATAT
TTTCCGTCTTTATGTCCAGAAAAAAATAAGAGCCAGTAAATTTGAGTCTC
CAACTGCTCCTATGTTTACTTTTTAAACCTAGTCGAGCATCagaactgtt
cttattttttagccattttgagcctcgtttttcttttccagttgcTGTTA
TAAAGAAGATTCActcttctttttataagaacatttaccTCCTGTTCCAA
TTTTTATTTCAGTATTCAGTTTTTCAGTGTTTAGAACTTTTGTTTTTTGG
TATCTTCTGGTGTCCAAGCGGGATACTGAGTGCTGTTGGGTACTCAACAA
AATCACCAGCCTGGGACTTCaggttttgaatattttggttTAGTTTATAT
TATGTTTAGCTTGTATATTTTATTTCATCAGTCACTTACAGCGGCTTCAT
AAACAATTGTATTCAATTTTGTCACATTCTCACTCTACCTTACAGtagga
aattttggcgggaatttaatttggcagatggccgaaaaagttttttcaga
ggaattttcatttagtagggggccaagcctggggttccgtgacatctttt
ctacgacctagccatttttagtctattccaaagaac Coding sequence (CDS) from alignment at scaffold_250:191201..192936 >TCONS_00055120 ID=TCONS_00055120|Name=TCONS_00055120|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_250:191201..192936 (Clytia hemisphaerica)
GTTCAAGACCTTAAAGACCTCGAAGGTGGAGTCTATAAAAAAGGTCGCGG
GCCATCATTAAGCCAACTAGAGgaaagaaaaaagcaaagaCAAGTCGAGG
CAGCGAATAGGGTTGGCGGCGACATTCTGGACTATGGTGTTTCCAGTCTA
CAACAACCAGAAACAAAAAGGACACCAAGTACCAGCAATGAACCATGCAA
CCCAAAAAATCCACCTACAAAGAAAAGTCGTTTAAGCAATATGCTTAAAA
ATAGAACCGAGACGGCCAAAGCTCTGAAAGAAACCATGAAGGTGCTATCC
TTACAAAAGGAGACAGACTTGAAATGGGTCTTTGAAGTACGAAGCAGCAC
CAGTGGCAAAGTTTCCTATACCGTAATTATTTGTAGAGTTCCCTCGTGTA
CTTACCCAGACTTCAAGAAAAACGGGATGAAGGTGTACTGCAAGCACATA
ATATTTGTAATTTTGTTTCCGCTCCAAAAGGAAGGTGAATGTCAGTTTGC
TCGTCATATCAATgaccaaaacttagcatcgatTCTTTCGACAACTGTCG
ATAAAAGATATTTCACAACAAAGCCCTCGTCATCAGGCAAAGATTACAAA
ACCATTCTTCGAATGCATCATCAGTTTACAAATCCTCAAATATTCCTGAT
CCATCACAAGGAGCTACGTACTGCAAGGTGTCAGGGATGTAAAGCATCGC
TCAATCCTGGTGAATTAACCATTAAAGTTTCAGGGGCACTGAGGGTGCCT
TTTGGCACAGAAAGGGCAGTCTTGAAACCAGCCATGTATTTCTGTCCAAT
GAAAGAATGCTTAAGAAAGGCTCCAGCCTGGACGAACGTCAAATTTTGTG
GAGAGGTCACATGGTCAGATGACATTACGGAAATggaaaggcaaaattta
aaCATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055120-exon-scaffold_250-1491911889:191201..192936 | TCONS_00055120-exon-scaffold_250-1491911889:191201..192936 | Clytia hemisphaerica | exon |
| TCONS_00055120-exon-scaffold_250-1510915933:191201..192936 | TCONS_00055120-exon-scaffold_250-1510915933:191201..192936 | Clytia hemisphaerica | exon |
| TCONS_00055120-exon-scaffold_250-1575043694:191201..192936 | TCONS_00055120-exon-scaffold_250-1575043694:191201..192936 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:191201..192936 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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