TCONS_00055119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055119
Unique NameTCONS_00055119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055119 ID=TCONS_00055119|Name=TCONS_00055119|organism=Clytia hemisphaerica|type=transcript|length=335bp
CTTGACTTCCAAGTGCTGCTCCTAGGTGCCGCTTTCCTTCGGTTGTGTAT
TTGATTTCTGAGTTTTGAAATATCTCCTGGGCACTTTCCATCTTCTCTCT
CTCCTTCACAATCAACCAACTTTTGCTCTCATTTACAAAGTATCCATATT
TCTTGCCTTCCTCAATCAATGTCTCCCACCATACTTTTAAATCTGACAGT
TTTCCAGCTCCTGTAATATCATCCGCAAGAGAAACATTTTTCACAGACTT
TACTTtgtctttcaaaaaatcaataatgGGAGTGATACCCAAGGCGTAAA
AAGACATTGCAAGATTGTCACCTTGAGTAGTCCCC
Run BLAST on NCBI

protein sequence of TCONS_00055119-protein

>TCONS_00055119-protein ID=TCONS_00055119-protein|Name=TCONS_00055119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
GTTQGDNLAMSFYALGITPIIDFLKDKVKSVKNVSLADDITGAGKLSDLK
VWWETLIEEGKKYGYFVNESKSWLIVKEREKMESAQEIFQNSEIKYTTEG
KRHLGAALGSQ
Run BLAST on NCBI

transcript from alignment at scaffold_250:154891..155225

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055119 ID=TCONS_00055119|Name=TCONS_00055119|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_250:154891..155225 (Clytia hemisphaerica)
GGGGACTACTCAAGGTGACAATCTTGCAATGTCTTTTTACGCCTTGGGTA
TCACTCCcattattgattttttgaaagacaAAGTAAAGTCTGTGAAAAAT
GTTTCTCTTGCGGATGATATTACAGGAGCTGGAAAACTGTCAGATTTAAA
AGTATGGTGGGAGACATTGATTGAGGAAGGCAAGAAATATGGATACTTTG
TAAATGAGAGCAAAAGTTGGTTGATTGTGAAGGAGAGAGAGAAGATGGAA
AGTGCCCAGGAGATATTTCAAAACTCAGAAATCAAATACACAACCGAAGG
AAAGCGGCACCTAGGAGCAGCACTTGGAAGTCAAG

Coding sequence (CDS) from alignment at scaffold_250:154891..155225

>TCONS_00055119 ID=TCONS_00055119|Name=TCONS_00055119|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_250:154891..155225 (Clytia hemisphaerica)
GGGACTACTCAAGGTGACAATCTTGCAATGTCTTTTTACGCCTTGGGTAT
CACTCCcattattgattttttgaaagacaAAGTAAAGTCTGTGAAAAATG
TTTCTCTTGCGGATGATATTACAGGAGCTGGAAAACTGTCAGATTTAAAA
GTATGGTGGGAGACATTGATTGAGGAAGGCAAGAAATATGGATACTTTGT
AAATGAGAGCAAAAGTTGGTTGATTGTGAAGGAGAGAGAGAAGATGGAAA
GTGCCCAGGAGATATTTCAAAACTCAGAAATCAAATACACAACCGAAGGA
AAGCGGCACCTAGGAGCAGCACTTGGAAGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034727XLOC_034727Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055119-proteinTCONS_00055119-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055119-exon-scaffold_250-1491911889:154891..155225TCONS_00055119-exon-scaffold_250-1491911889:154891..155225Clytia hemisphaericaexon
TCONS_00055119-exon-scaffold_250-1510915933:154891..155225TCONS_00055119-exon-scaffold_250-1510915933:154891..155225Clytia hemisphaericaexon
TCONS_00055119-exon-scaffold_250-1575043694:154891..155225TCONS_00055119-exon-scaffold_250-1575043694:154891..155225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:154891..155225 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40885	0.27457	0	0.487862	0.00592219	0.904827	1.33661	1.11154	1.23439	0.589647	0	0.802846	0.749041	0.583414	0.159882	1.09527	0.637406	1.64053	2.6375	1.38703	1.4497	0.40457	0.592215	0	0	0	1.86809	0.0064262	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top