TCONS_00055108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055108
Unique NameTCONS_00055108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055108 ID=TCONS_00055108|Name=TCONS_00055108|organism=Clytia hemisphaerica|type=transcript|length=792bp
GAACTCCGATTTCATCCTTTGCAAGCATTTTTAGGGCGGCATTTACTTTC
CCTTGCATCATAAGGTTTGAAAAGGCTTTGCACTGTCGGTTGTCGGTTTA
CGTTTTGATTCCACAAGCTTTTTCTGTATGTTTTCCCTTCAATGAGAAGG
TCTGTGAAGTTTCCTTTTTTCCACCAATCTAACCTTGTTTCTAGTTTAGC
TGAGTGGTCTCTAGCTTTACTGTCCTTAGATGGCTTCTGTAGCAATAAAG
CTGCTAAAATCATGAACACTTTCATAGCTATACAATGTAAATTGTCTTTG
GAGTTGTAAATTTCAAGCCAACGTGTCAATTCAGTTATAAATTCCTTGCC
GGCTTTCCCTGTTGGAAGTTTGAATAAATTCTTTCTCCATCGAACGATGA
TCTCATAGGTATCATTGACTGATTTGAACTCATTAACATTTACGGTGTTT
ACGGTCTGGTATGGTTTGTAATGTTTGCTCTGGTAAATGACTCTAAATTC
GGTTCGAAAACAACATCCTCTCTAACTAGCTCCAGTTCATCTGCTTCCAA
TAAAATGTTCAAAACGGTTTCTTCACTATTTATACTATTAACAGTCACTT
TATCTACATGTCTTGGGATAGGTATGGGTTCATTATTTACATTATTTACA
TTTTGGTTGGTGGGGTTTTGTCTGGTTTTGATGACGGTTGTTTGATATTT
ACAGAAAGTTCTCTTGTTTGTGTTTACGTTTTTGTATTTACAGTTTGTAT
ACATGTGGGTTTCAAGTTCATTCTTCGTTTGAAAACGCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_250:146477..154183-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055108 ID=TCONS_00055108|Name=TCONS_00055108|organism=Clytia hemisphaerica|type=transcript|length=7707bp|location=Sequence derived from alignment at scaffold_250:146477..154183- (Clytia hemisphaerica)
GAACTCCGATTTCATCCTTTGCAAGCATTTTTAGGGCGGCATTTACTTTC
CCTTGCATCATAAGGTTTGAAAAGGCTTTGCACTGTCGGTTGTCGGTTTA
CGTTTTGATTCCACAAGCTTTTTCTGTATGTTTTCCCTTCAATGAGAAGG
TCTGTGAAGTTTCCTTTTTTCCACCAATCTAACCTTGTTTCTAGTTTAGC
TGAGTGGTCTCTAGCTTTACTGTCCTTAGATGGCTTCTGTAGCAATAAAG
CTGCTAAAATCATGAACACTTTCATAGCTATACAATGTAAATTGTCTTTG
GAGTTGTAAATTTCAAGCCAACGTGTCAATTCAGTTATAAATTCCTTGCC
GGCTTTCCCTGTTGGAAGTTTGAATAAATTCTTTCTCCATCGAACGATGA
TCTCATAGGTATCATTGACTGATTTGAACTCATTAACATTTACGGTGTTT
ACGGTCTGGTATGGTTTGTAATGTTTGCTCTGGTAAATGACTCTAAATTC
GGTTCGAAAACAACATCCTCTCTAACTAGCTCCAGTTCATCTGCTTCCAA
TAAAATGTTCAAAACGGTTTCTTCACTATTTATACTATTAACAGTCACTT
TATCTACATGTCTTGGGATAGGTATGGGTTCATTATTTACATTATTTACA
TTTTGGTTGGTGGGGTTTTGTCTGGTTTTGATGACGGTTGTTTGATATTT
ACAGAAAGTTCTCTTGTTTGTGTTTACGTTTTTGTATTTACAGTTTGTAT
ACATGGTGAATTGATAATATGCGAGTTGCGAGTTGGTCATGCGAGTTGCG
AGTTGCAAGTTGCGAGTTACGAGTTACGAGTTGCTATTTTAAGTAAATAA
AAGTGCGAGTTGCGAGTTGAAAATTTCACGTTAAGACATCANNNNNNNNN
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NNNNNNNNNGACTTTAGTCATGTTTAGACTCAGACAGCAGGTCCTAATTT
CAGCCCTGAATTTAGTTGCTGTTAATTATGAGCTTTTTGTTCTTTATTTT
TAGAGAAGTTGTTAGCTAGAATAAAACAAATCTCAGGCTTATTATTTTCC
AATGGCAATTTGAAGAGTAGCTGATTGACTACTATGTCTTATATAACCAG
CCCCACCAGACAGCCCATGCAGTAATGTCAACCGAGTAANNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGATGTGCAACACTGGCGAAC
TGAAGAATGAATTTATCAGATGAGATTTAACGTAGCATCAACCAATTTAT
GGAATAAACTTCATTTTCGTTGAATTGAGTTACTAGTGTATATGTATAAA
AGTTGCGAAGCGATCGAGGCAGGTCACTAAATTCGCAAGTTGCAAGCAAA
AAGAAAGAAAGTATTGAATGAGCCCGATGAGTTCTTTTTTCTAACGTTAT
AGGGGTCTCACCAAACAAAAATGATTTATACCTTATTACATGAGTCTAAG
TATGGAATTTAACGGCCTTGAAATTAACATGAAATTTCTAAATTCGCGCT
AAATTCAACTCTGTTAATTACACGTCTCCTAATACTCATGCAAGGTAAGT
AAAAAATATTCGAAGAAAATTTTAAAATCGCGTCTNTCTCCTAATACTCA
TGTAAGGTAAGTAAAAAATATTCGAAGAAAATTTTAAAATCGCGTCTTTT
GTTCGGGAAAGCTTTTCCACCTAAACCTAAAAAGTAAATCATTTTTAATT
TTGGTTTTTATTTTGACTCATTTTACTTCCGGTTTTAAATTCCTTGTGTT
CGAAAATCGAACTTTCGAATTTTTCGAATTTCGAATGTTTCAATAAAAAC
AAACATTCGAATCCCCCTTGCCATAAATAGTTTTTTATTTGTTAGAACTC
CAGGGTAGACAGACTTTCCTCAGTAAATGATTGGTGACTCGGCGATGATA
GTATTCATGGTTTCGAAGATTTTTACATGTAAATGTTGATATCAAATCTA
GTCTTTATTTTAGAGTCCCTTGCATACAACCAAAACCCAATCAAAACAAA
AGAATCCTCGGGGTCAAGCACTATCCGGTTTAAACACCAGTCGGTCTATT
GAGACAGGGATGTGAAATACTGAGGAATTTAATATTTAATATAACCATAC
CCTACGGTGGCCTACAAGGGCAAAAATCTTACTTTCTTTTTTTTGGGGGA
ATCTTTGTTTTTTTGGGGGAATCTTTGTTTTTTGGGGAATTTTTCTTTTT
TTCGGGGAATCTTTGTTTTTTTGGGGGAATCTTTTTTTTTGGGGGGGGGG
GAATGTTTTTTTGAGTGTAAATACTGTATGAAACTAACGTAATTATGATT
TAAAACCATGGTGTATTATTCGAATACCTTAAGGGAACTATTTTTTGCGG
GAACTAATTTTTGCGGTTTGCAGTTTTGCGATTTTTTGCTGGAACCTAAT
TTTGCGGATTTCTCACTCACTTGAAAGAAAATTAGAGCCTCGTGAATTAT
TCGACCCTGTTTAACGCATTGAAAAATTTTGCGTTTGGCCCAAATCCACA
AAAACCACAAAATTCAGTCTCGCAAAAACTAGTTCCCTTAAGATATTATT
TGCTTCTCTGTTTTCCCATTCCTGTCTTCCAATTGTGGATGAGAATTTTG
CTTGTCCTCCCTGAAGATGTCATGTCAATCCCCACTTTCTTCATTTTCCG
CAATTTAAACTCCCTTAAGTAGACTCTTTGCTGGTTGAAGTGGTGCATCT
GCGTTGTATCCATTGAGTTTAAAGCCCGAAGGGCTAGAGGAGAATCTTTA
ACCTTTCTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCACTTGGGTAAGGCATCAGGTTACGCACACAAAGTT
ATACAAGGACATAAAAAGTAAAGCCAAGTTCAGTTGTAGGTATACACAGA
TTATCATCTTATAATACTTTATTATTCAATCCATATATAAGTCCATTTCA
TTTTATGGATATAAATGTCATTAAAACTCCCACTTCTAAAGAAGGCAACT
TCCAATTCATCCAACCAGATCGATGAACACAATTGGCATTCAGCCATTGA
GTGCTAGCTGACATCAGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTTGCATAACTTTTGATCTAGAAAAGGTATGGACTTTAAATTTGGCACAA
ATGTCCTCTGTCATAAAAGGAGTTCATAGAAAAAAATTTGGGTTGATGAC
GTCATCATAAAGGTGATGACGTCATCACAAAGTTTCACAATTATCGCTCG
CCAATGAAAAAGTACTATTCAATAAAATAGCAATTAAAGTTGAACAAATG
GAGATTTTTCCATTCTGTTTCGAATTTCTAAAAGCCAAAAAGAATACCTT
TAACATATTTGCCGGTTTTTAATATACTCTATTAAAATCGAGGCTTAAAA
TCTATGCAGAAAATGAGTAAATTTTTTCAAAAAACCAGCAGTTTTTGAAA
ATTTTTAAAATATTTTTGAAAATTTATCATTGATACCTAAAACCTGTCAA
AATTTGAAGTCAATTGGATGCCTGGATCAAAAGTTATGCTAAATTTAATA
TTTTGGGATCTTACCGCTGGTTTTAGCTGGATTTTATGATATGCCTGCAC
AAAAAAGTCATAAAACCTGATCTGGTCGGTGTATAATTGTAAAATTTGGT
ATACATGCTGCTACTAGGATTATATTAAAAGTCAAAAACTTTCAAAGTGT
TAAACAAAATTTTCAGTGAGCTATTAGCAAAAGGGTGCCAGCCTGGTGGA
AAACACCCCCCCCTGATAAAAATAGGGTTAATAACAATGCAATGACTTCT
TTTTCGAAATGACAAAAAAACACCCATTCAGCAGACGCTTGATGATGGTA
TAAAAAAAATATTTCTTTACCATCAAAATATACAATATTTCTGCAAAATA
AAGACAATAATCAAACTGCAAAAATGAGAAGTTCATGTAACTAAGAAAGT
ACGAAAACAAAATTTCATTTCAACTCTCGATTTTAATTTTCAACCCGCAC
TTTTGATTTTTCAACTCGCGATTTTAATTTGCAACTCGCGATTTTAATGT
GCAACTCGCATTTTTAATTTTTCAACTCGCGATTTTAATTTGCAACTCGC
ACTTTTGATGTTTCAACTCGCGATTTTAATTTGCAACTCGCACTTTTAAT
TTTTCAACTCGCGATTTTAATTTGCAACTCGCTCTTTTGATTTTTCAACT
CGCGATTTTAATTTGCAACTCGCACTTTTGATTTTTCAACTCGCGATTTT
AATTTGCAACTCGCGATTTTAATCTGCAACTCGTGATTNNNNNNNNNNNN
NNNNNNNNNNNNNGCTTGTTAGGATTAGGCTTTCAAGAGTCAAGAGATTG
GATTTAGCTGTTTTTACGACCCTTCTTTAGTGATTTACAACCCTGATTGG
TCCTTTATTTCTACTTATGCCAAAATGTCGCCAAAATTTTTTCAACTCGC
AACTCGCACTTTTATTTGGTTAAAATAGCAACTCGTAACTCGCAACTCAC
ATATTTGATAGCAACTCGCAACTCGTAGGACCAACTCGCAACTCGTATGT
TAAAAATCCACGTATACATGTGGGTTTCAAGTTCATTCTTCGTTTGAAAA
CGCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034716XLOC_034716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055108-exon-scaffold_250-1575043694:153432..154183TCONS_00055108-exon-scaffold_250-1575043694:153432..154183Clytia hemisphaericaexon
TCONS_00055108-exon-scaffold_250-1575043694:146477..146516TCONS_00055108-exon-scaffold_250-1575043694:146477..146516Clytia hemisphaericaexon
TCONS_00055108-exon-scaffold_250-1510915933:153432..154183TCONS_00055108-exon-scaffold_250-1510915933:153432..154183Clytia hemisphaericaexon
TCONS_00055108-exon-scaffold_250-1510915933:146477..146516TCONS_00055108-exon-scaffold_250-1510915933:146477..146516Clytia hemisphaericaexon
TCONS_00055108-exon-scaffold_250-1491911889:153432..154183TCONS_00055108-exon-scaffold_250-1491911889:153432..154183Clytia hemisphaericaexon
TCONS_00055108-exon-scaffold_250-1491911889:146477..146516TCONS_00055108-exon-scaffold_250-1491911889:146477..146516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:146477..154183 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304269	0.237368	0.137803	0.202229	0.492388	0.194546	0.938845	0.366223	0.205121	0.952784	0.739836	0.851094	0.121416	0.546396	0.691096	0.407908	0.68524	0.795996	0.776267	0.879999	0.411858	0.258287	0.488416	0.761213	0	0	0.834426	0.356209	0.135086	0.137631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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