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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055098 ID=TCONS_00055098|Name=TCONS_00055098|organism=Clytia hemisphaerica|type=transcript|length=1028bp
CAGATTGTGAGGAAACCATTGAACAGATGACACTTGCATACCACAGTTAT
CTTTTGAAGAATCCTGAAAAAACGGAAgagataaataaaatatttgagcC
AAACACTACACTGAAAGACTGAAGGAAAAGATGGATGAGATTGACAGCTT
GgagaaagaaaacaaacttAAGAAAAACGATGGACCCTTGGTGCAAAATT
TGGATGACACGCTCAAACAACTCCATGTTCACCGTAGTAGCTTTCATGGA
AGGTCCTTTGTAGGAAATCATGTAAACACTCTTTTGAAGGATAAGAGCCT
GGTGAAATTGTGCAACTCCATTCCAATTCTCGTGCACAAAATGGGGTTTG
CTGGCACCTACCTTCACAGAGAGTCAATTGAAATTgcagaacatttcaaa
ttacttttcaaaaagtatGCTGTGTGTCACAACTATATGAACTCGTCAGA
TTATTTTAGCGACGAAAAGATTGGTAAACTAGATGAAGCCATCAAAGACT
TAATGACGTACTATCGTACAGGATTTCCCGAAGAGACAATAACACCAAAA
TTGCACATGTTGGAACATCATGTTTTGGACTTTATCAAGAGATGGAGGAT
TGGGCTTGGAATGTCTGCTGAGCAAGGGGCAGAAAGTATACATCCTGAAT
TTAATGCTCTAATAAAAAGATTTGCTCTGACGAGGAACGAATTCGCAGTT
TTTTTGGTGAGCATCATACAAAAGTTCGACCGCAAGCAAAAATCTTGGCC
CCTGAaatcgaaaaaagaaattttaaagtgccAAGAGAAGAATAAAAACT
CACCTTTGTTTTGAGGTATCCAATTAGAACAGTTTATGAGATGATTCAAG
TTGCATTTTCCACTGAACAATGTTCCAGATGTCCAGCTGTTCCCATGATA
TGTTTGCGAAAATTTGTACAAGTTGACCTACTTTAACATTCCATTTCTTG
TTTCTCTAGAGTTGACAGGAATTTAAGTTTGGTGTTTTTGGAAGCCATAT
TGTTTGTACTttcatgagaaaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00055098-protein >TCONS_00055098-protein ID=TCONS_00055098-protein|Name=TCONS_00055098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MDEIDSLEKENKLKKNDGPLVQNLDDTLKQLHVHRSSFHGRSFVGNHVNT
LLKDKSLVKLCNSIPILVHKMGFAGTYLHRESIEIAEHFKLLFKKYAVCH
NYMNSSDYFSDEKIGKLDEAIKDLMTYYRTGFPEETITPKLHMLEHHVLD
FIKRWRIGLGMSAEQGAESIHPEFNALIKRFALTRNEFAVFLVSIIQKFD
RKQKSWPLKSKKEILKCQEKNKNSPLF Run BLAST on NCBI transcript from alignment at scaffold_250:163752..165210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055098 ID=TCONS_00055098|Name=TCONS_00055098|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at scaffold_250:163752..165210+ (Clytia hemisphaerica)
CAGATTGTGAGGAAACCATTGAACAGATGACACTTGCATACCACAGTTAT
CTTTTGAAGAATCCTGAAAAAACGGAAgagataaataaaatatttgagcC
AAACACTACACTGAAAGACTGAAGGAAAAGGTAAAACACATTTGACATAA
TTAAATTTTAACCTTGAGACATTTTCTTGTACATAAATGGAAGACTTGAA
ACTTGCTCAGTTTTCAAGTGCCTGATTATTTAaagatttaatttatttta
ctATATTTGCCAGATGGATGAGATTGACAGCTTGgagaaagaaaacaaac
ttAAGAAAAACGATGGACCCTTGGTGCAAAATTTGGATGACACGCTCAAA
CAACTCCATGTTCACCGTAGTAGCTTTCATGGAAGGTCCTTTGTAGGAAA
TCATGTAAACACTCTTTTGAAGGTGGGTATATGAATGATTCTAACCTGAT
CACTTATGTATCTTTCAAGAATAATCATTGTTTTAGTTACGATACTTGaa
acctaaaaataaaaaaatcaattataCGTACAAAAATTGTACTATATATA
CATTTCTTAACTTATTTTCTCTACATAGGATAAGAGCCTGGTGAAATTGT
GCAACTCCATTCCAATTCTCGTGCACAAAATGGGGTTTGCTGGCACCTAC
CTTCACAGAGAGTCAATTGAAATTgcagaacatttcaaattacttttcaa
aaagtatGCTGTGTGTCACAACTATATGAACTCGTCAGATTATTTTAGCG
ACGAAAAGATTGGTAAACTAGGTGAGTATATTTCAAAACTTATGAAAGAC
TACTTGAGGACGAAAATATACCTGAGAATGACAAAATCTACATTAGGTAT
TAGGTAGATACTTACATTATTTGAATCAGTATGTAATCTCTTTGTCGTTT
GTGTGTTTCATAGATGAAGCCATCAAAGACTTAATGACGTACTATCGTAC
AGGATTTCCCGAAGAGACAATAACACCAAAATTGCACATGTTGGAACATC
ATGTTTTGGACTTTATCAAGAGATGGAGGATTGGGCTTGGAATGTCTGCT
GAGCAAGGGGCAGAAAGTATACATCCTGAATTTAATGCTCTAATAAAAAG
ATTTGCTCTGACGAGGAACGAATTCGCAGTTTTTTTGGTGAGCATCATAC
AAAAGTTCGACCGCAAGCAAAAATCTTGGCCCCTGAaatcgaaaaaagaa
attttaaagtgccAAGAGAAGAATAAAAACTCACCTTTGTTTTGAGGTAT
CCAATTAGAACAGTTTATGAGATGATTCAAGTTGCATTTTCCACTGAACA
ATGTTCCAGATGTCCAGCTGTTCCCATGATATGTTTGCGAAAATTTGTAC
AAGTTGACCTACTTTAACATTCCATTTCTTGTTTCTCTAGAGTTGACAGG
AATTTAAGTTTGGTGTTTTTGGAAGCCATATTGTTTGTACTttcatgaga
aaaaaaaat Coding sequence (CDS) from alignment at scaffold_250:163752..165210+ >TCONS_00055098 ID=TCONS_00055098|Name=TCONS_00055098|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_250:163752..165210+ (Clytia hemisphaerica)
ATGGATGAGATTGACAGCTTGgagaaagaaaacaaacttAAGAAAAACGA
TGGACCCTTGGTGCAAAATTTGGATGACACGCTCAAACAACTCCATGTTC
ACCGTAGTAGCTTTCATGGAAGGTCCTTTGTAGGAAATCATGTAAACACT
CTTTTGAAGGATAAGAGCCTGGTGAAATTGTGCAACTCCATTCCAATTCT
CGTGCACAAAATGGGGTTTGCTGGCACCTACCTTCACAGAGAGTCAATTG
AAATTgcagaacatttcaaattacttttcaaaaagtatGCTGTGTGTCAC
AACTATATGAACTCGTCAGATTATTTTAGCGACGAAAAGATTGGTAAACT
AGATGAAGCCATCAAAGACTTAATGACGTACTATCGTACAGGATTTCCCG
AAGAGACAATAACACCAAAATTGCACATGTTGGAACATCATGTTTTGGAC
TTTATCAAGAGATGGAGGATTGGGCTTGGAATGTCTGCTGAGCAAGGGGC
AGAAAGTATACATCCTGAATTTAATGCTCTAATAAAAAGATTTGCTCTGA
CGAGGAACGAATTCGCAGTTTTTTTGGTGAGCATCATACAAAAGTTCGAC
CGCAAGCAAAAATCTTGGCCCCTGAaatcgaaaaaagaaattttaaagtg
ccAAGAGAAGAATAAAAACTCACCTTTGTTTTGAATGGATGAGATTGACA
GCTTGgagaaagaaaacaaacttAAGAAAAACGATGGACCCTTGGTGCAA
AATTTGGATGACACGCTCAAACAACTCCATGTTCACCGTAGTAGCTTTCA
TGGAAGGTCCTTTGTAGGAAATCATGTAAACACTCTTTTGAAGGATAAGA
GCCTGGTGAAATTGTGCAACTCCATTCCAATTCTCGTGCACAAAATGGGG
TTTGCTGGCACCTACCTTCACAGAGAGTCAATTGAAATTgcagaacattt
caaattacttttcaaaaagtatGCTGTGTGTCACAACTATATGAACTCGT
CAGATTATTTTAGCGACGAAAAGATTGGTAAACTAGATGAAGCCATCAAA
GACTTAATGACGTACTATCGTACAGGATTTCCCGAAGAGACAATAACACC
AAAATTGCACATGTTGGAACATCATGTTTTGGACTTTATCAAGAGATGGA
GGATTGGGCTTGGAATGTCTGCTGAGCAAGGGGCAGAAAGTATACATCCT
GAATTTAATGCTCTAATAAAAAGATTTGCTCTGACGAGGAACGAATTCGC
AGTTTTTTTGGTGAGCATCATACAAAAGTTCGACCGCAAGCAAAAATCTT
GGCCCCTGAaatcgaaaaaagaaattttaaagtgccAAGAGAAGAATAAA
AACTCACCTTTGTTTTGAATGGATGAGATTGACAGCTTGgagaaagaaaa
caaacttAAGAAAAACGATGGACCCTTGGTGCAAAATTTGGATGACACGC
TCAAACAACTCCATGTTCACCGTAGTAGCTTTCATGGAAGGTCCTTTGTA
GGAAATCATGTAAACACTCTTTTGAAGGATAAGAGCCTGGTGAAATTGTG
CAACTCCATTCCAATTCTCGTGCACAAAATGGGGTTTGCTGGCACCTACC
TTCACAGAGAGTCAATTGAAATTgcagaacatttcaaattacttttcaaa
aagtatGCTGTGTGTCACAACTATATGAACTCGTCAGATTATTTTAGCGA
CGAAAAGATTGGTAAACTAGATGAAGCCATCAAAGACTTAATGACGTACT
ATCGTACAGGATTTCCCGAAGAGACAATAACACCAAAATTGCACATGTTG
GAACATCATGTTTTGGACTTTATCAAGAGATGGAGGATTGGGCTTGGAAT
GTCTGCTGAGCAAGGGGCAGAAAGTATACATCCTGAATTTAATGCTCTAA
TAAAAAGATTTGCTCTGACGAGGAACGAATTCGCAGTTTTTTTGGTGAGC
ATCATACAAAAGTTCGACCGCAAGCAAAAATCTTGGCCCCTGAaatcgaa
aaaagaaattttaaagtgccAAGAGAAGAATAAAAACTCACCTTTGTTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055098-exon-scaffold_250-1491911889:163752..163881 | TCONS_00055098-exon-scaffold_250-1491911889:163752..163881 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1510915933:163752..163881 | TCONS_00055098-exon-scaffold_250-1510915933:163752..163881 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1575043694:163752..163881 | TCONS_00055098-exon-scaffold_250-1575043694:163752..163881 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1491911889:164015..164173 | TCONS_00055098-exon-scaffold_250-1491911889:164015..164173 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1510915933:164015..164173 | TCONS_00055098-exon-scaffold_250-1510915933:164015..164173 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1575043694:164015..164173 | TCONS_00055098-exon-scaffold_250-1575043694:164015..164173 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1491911889:164330..164522 | TCONS_00055098-exon-scaffold_250-1491911889:164330..164522 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1510915933:164330..164522 | TCONS_00055098-exon-scaffold_250-1510915933:164330..164522 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1575043694:164330..164522 | TCONS_00055098-exon-scaffold_250-1575043694:164330..164522 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1491911889:164665..165210 | TCONS_00055098-exon-scaffold_250-1491911889:164665..165210 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1510915933:164665..165210 | TCONS_00055098-exon-scaffold_250-1510915933:164665..165210 | Clytia hemisphaerica | exon |
| TCONS_00055098-exon-scaffold_250-1575043694:164665..165210 | TCONS_00055098-exon-scaffold_250-1575043694:164665..165210 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:163752..165210 + |
Blast
The following BLAST results are available for this feature:
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