TCONS_00055070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055070
Unique NameTCONS_00055070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055070 ID=TCONS_00055070|Name=TCONS_00055070|organism=Clytia hemisphaerica|type=transcript|length=588bp
CTTCAATTAAAACGAAATCATTCCTCTCTAAACTTATCTAAAAACGAAAG
TACAAAAAGAATAGATGGCTATAAAGAAAGTAACAAATAGCACTGAAGCC
ATACTTTCTGCCTTCCTTCCGTTAGGTTAAAAGATGGTTGAAAACCTTAG
TAGAAAGTCAATATTCTGCcaaaattagaatgaattcaatCGTATATAAA
CCAGCTGTATTTGAAAAAACCCCTTCTATCAGTTATCTAAACCCAATATC
TTACCCTTTCTAGAAATGTGTCTATGAGTTCTTGATACTCAGCCAAATCT
TCATCGCTTTGAATCCAGAAATATCGCACATATTTCAACCGGTATGATGA
ACGTCNGCTTTCATCATCTTCACAAGCCACGACGCTGATCTCaactttct
cttctttttcaatcaaattctCCATTTCAAATACAATTAGCTatatattt
catttcaaaaagcTCAACAGTttaaatttcatgctttaatcgccgccatt
ttgaattttgcttTGAATTCAAGAATCGTGGCGCCGACGTTTTTGCCACG
CCTAGGGGCTAAATCACGACGACGTGGTGCCGTATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_249:51228..58748-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055070 ID=TCONS_00055070|Name=TCONS_00055070|organism=Clytia hemisphaerica|type=transcript|length=7521bp|location=Sequence derived from alignment at scaffold_249:51228..58748- (Clytia hemisphaerica)
CTTCAATTAAAACGAAATCATTCCTCTCTAAACTTATCTAAAAACGAAAG
TACAAAAAGAATAGATGGCTATAAAGAAAGTAACAAATAGCACTGAAGCC
ATACTTTCTGCCTTCCTTCCGTTAGGTTAAAAGATGGTTGAAAACCTTAG
TAGAAAGTCAATATTCTGCCAAAATTAGAATGAATTCAATCGTATATAAA
CCAGCTGTATTTGAAAAAACCCCTTCTATCAGTTATCTAAACCCAATATC
TTACCCTTTCTAGAAATGTGTCTATGAGTTCTTGATACTCAGCCAAATCT
TCATCGCTTTGAATCCAGAAATATCGCACATATTTCAACCGGTATGATGA
ACGTCNATTAGCATAGGGCCTAGAAAAGCTACTACACTCATTTTTTTTAT
AAGCATACGATAAATTTGGGCTGAAGCATTCTCAAACGCTCTGAAAGGCT
GAACAAAAAAAAGTTAAAAAAAAAAAAAAAGTTACCGTTTATTTAGAGAA
GGGGCGTTATTGAATGGTTTGCCTTTTTGGAGGAGCATTATTAATCCGAA
AGCGGGCGTTTATTCAAAGTAATACGATCGGTATGAGATTTGGCGAATTC
CAGAAATTTTCTTTACTTCATTAAATACCTTCAGTACAGTCAAGTATCAA
TATTTGAGGTATTACGAAAATGGCTACTTTTTGCCGTAATTGCTTTCGTT
TTTAACACAAGGTCTTAGCAACGGGTACCCCGGGCATAGTTACGGGGCAT
TGAAAAAAAATCCTGACATAGAATTTCAAAAAGATTTACACTATCATATT
CTACATTACAAAATACACCTGTTCTATGTTAGGTTTTTTTTCTCGGTGTT
TTCTAGGCTTAATTATCGTCATGCAAAGTAAATAAAACACCCTGGAAATC
TTTAGGTTTTGATAAGCAAAATACTTACATACTATTTTTTACTTTTCAGG
TATTCATCCAATCAGAATTCACGCTCAGAAACTTTCAACCAATCAAAGTT
CAACCGTGACGCGGGAGATGATCCAATCAGAATCCCGAAGCTAAAGACTT
ACCGCCAATCAGAATTTGTTAGCGAGCAGTATTCATCCAATTGGAATCGC
GTAACACGAAAGCGAAAGTGAAAGTCAAGGCGGAAATATATTCTTTTTTC
GACATGATTTGCATATATTAGAACAGAAAGAAACGCCAACTTAACTTGTC
AAAGATTTGTTTAAAACCACCTTATTTTTTGTTGGGTATCGCCTAAATTT
ATCGAAAAAATATGCTTTTCAACATTAATCTTAAAATCTCTTTTATTGCT
AAGTATCCCCAGGGCGCTCAACGCCAAAAGAAAAATAAGCGGGTGGAACC
GCCCTCGTAGTTTAATCCCGGGATTGAAAAAACCTGGAGAAAACCTTTTC
CGTACATATAATGTAGCTAAGGAATTTTAAAACACGGCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTGTAATTAGACAGCATGACAAAGG
TTTGTTATATTTTAGCATAACAAAGACAAACTCAGGAGGTAAGGTAAATT
GCGTTTTGACTGCTTTTAACTGTTTTAGCTTATTAGCGTTATTTTTGGGC
TCGTTGGTGGAATAAGGGCCTGCGTAAAAAGGGCCGGTAATGTAGTCAAT
AGTCGGTCACGATCGATATATAAACGATACGTGATCGAAGATAAGTAAAT
AATTGATAAGTAATCAATGCATGAACAGTAAGTAATCGATGATTGTTAAC
AATCGATACATGATTGATAAGTAATCGTTAGGTTGTATGTAGTCGATATG
TGATCGATAAGTACCGTAAGTTGGTCAAATCTCGACACACGTCTTCCAAT
CTCGACACCGGATCTGTAAAATAATCAAAACAAACCTTGAATGAAATTCT
TGGTATCATTCTTATCGAACAAGTTCATCCATCAAACTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAAGTTCAGTAAACATTGCAATCCTTTCAATTAAAAAAACAGCCAAATT
ATAAGCAGTTTTACACAACACACGAAACGCATGCAAACTTCCTCGTAACT
TTCTCTTGTACATTCTCATTGTAAATTTTACAACTTTATTACGCTTCAAG
TCACGTGATAAAATAATTCGCGCGCTTAGTCGACCTGGTTTCCATTTCCT
TATTATTTATTGCAAGCACACGCTCTAGGCACTAGGAGGTCGCGTTAAAC
TTCTAGGCGCCGCACCTAGCACACCCAGTCCCTTTTCAAATTCATAAGGA
AACCGGGTTCTTTTAATTATTTTCGGTTCACGGTAAAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCTAAAGTTAGGGGGGGGGTTCCCA
CTATGAATTGATTGATAACTTTGGTATGTATTTGTTTATGTTTGATTTTT
TATTTCGAAGACCAGCCTACAGCTATGCCGAGATTATTGGAAGACGTATG
TCGAGATTAGACCAACTTACGGTAATCAATAGCTTGGAAATAATCGATCG
CTGATCGATACTCAAGATTTTTTGAAGGTCTGATTACCTATTGATTACCT
ATTTATCGATTACTCAAGATTATCGATTAACTACGCCTGGTTCAGAGGGT
TTGAGAATGCTTCAGCCAAAATTTACCGTATGCTTATAAAAAAAAATGAG
TGTAGTAGCTTTTCTAGGCCCTATGCTATCAGGGGATTGAATTCAATTCA
AAAGTACTGTACATCCCAATCGAGATCAGCGAAAAATGTTGCTTTTAATT
TCGCGAAAATGGCGAAAATTCGAGAAATCGAGAAATTTAATCTCGCAAAG
CAAGGCGAAAGTTAATCCAATTAAAGTACCACTCCCTAAAATCTGATAAA
TATCGATCAAAAGCTGTGATCGATAGCCGATCGATTTTTAATCGATACTT
AATTTAATCGAAGTATAATCGATCTATAATTGATAAGGGGAGCCGTCCAT
ATTCATTTGACAACGCAAACATTGACGTTATGAGGGGGTGGGGGGGTTTT
CAAAAGTTAGGTTTGACGTTATAAAAAATCAAAGGTACCGTAAGACGGGG
TGAATCGGATACCCGGGGTGAATCGGATACTTTGTTTAATCGCCTCTCAT
ACTTCACTGACGATGTCTTTTTCCATTCTGTTTTCAGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTCTTATC
ATTTTGTCGACAAATCTTAGAGTCAACCAGAGCGTTATTGATAATCTTCC
TCCTCTCTCAAGTATCTAAGATTGTTCAGTACCACCTAAGAAAAACAAAA
ATATACGATGATCAGGTAAATTTCTCTACTCTTTTTATCGGCCCAGCTAT
ATCACACCCAGTATCGCTGCGAAACTGGAAAAAGTTAGCTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTTTTCATGGGGCATTAGTAGAAGTTCA
GTGGATACTTGAGACAGGGGTATTCTATGGACGCTAAACGTCAAAACAAC
GTTCTTTTATAACGTCCTAAAACAACGGGATATGTACACTGGTTTTTATC
AAGCGAATTTTCTATTAACCTAACCTAGCCAATGAATGTGAAACAGAGGT
GTGGGTATGCTAGACTCTTCTGGGATTAAAAGAAATACGCACCTGCTGGG
TATGATATTTTTCTGCTTTTAAATTCAATGCTATCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCCATCTAATGAATAATTACTTTGTGAGAATTGCAT
GAATTCAAATTATAACTTCGGCAAAACGTAATTTTTGAAAAATGGTATTG
CTCCACCACAGAATATATATAGAGAGTGTTTGTTTATGTTCCGAATGGCG
CCCCGTCAATTTCTATCCACTTCACCCCGAAACGAGTGACTTGATTTTCT
TGTATTCGATTGAAGATTGTTCCTCGTAGAAGAAACTTTTGAAAATGAAA
TTTTCTACACTCGCGAATTAGACCCCAGTGGTCAAATAAAACGACTTCAT
TTAGAGGTAGACTCATTTTGGAAGAACAAATTTTTGGAAAACAGTCGAAA
TCTATCCGAATCACCCCGTCTTACGGTATACCTTTTTGTGAAAATCGCGG
ATACTTGTAACCACCAACCACACTATACTTTATAAGCTTTCCAAAACATA
TTCGTGTATGAAATACATGAAAATTTGCTGCTCCCATAATCCCATTGGTT
CGCGCTATGTTATCATTACATCATATTTTCATTGTTTGCGCGATCGAGCG
AACCACATCGCACAAGTTGGCAAAGAAGAGGTGGTACGCCTAAAACACGG
CACGGACCTAGCGCCAAGTGGAGCTTTTAATTTCTTTTTAAATAAAGGTC
ATTAGTTAAAAGAACAAGTCATACACAGAGGATAACGTCAATTTGACGTT
TTGCGTTGTCAAATGAATATGGACGGGTCCCCTAAACAATCGATGACAAA
ATTGACCAAAAAATTGATCCATAAAATGGGCTCTTCCAGAAAAAATTTGA
TATAGGGGGTGGATGACGGGAATTTTCAGATAAAAGAAGCACTCGGAAAT
CCAGTCAATTTTTCAAAGTGCTTCGGAAATTCTGCTCAATTTTTTATTTC
AACCCTTGGAAATTCCACATAATTTGTCAAAGTTTTGAAAAAGGTATCGG
AAATTCCAGATTTTTCCACCAAAAAATTGATTTTGTATCGGAAATCAAGG
AGTTTCAATTGCTTTTGTATTGGAAATCCAGGAATTTCAAAAAAACATTT
TGCCTTGGAATTCCGCTGTCGTCCACCCCCCTACAACGGACTTTAACTGG
AAGAGCCCAATAAAATAATCGAGCTTTGAAAAAATCTTGAGTATCGATTA
CCTATCGATTCTATCGGTTAATCGATATCTAATCCATCGATTAATTATCG
ATTATTTATCGATTACTCAAGATTATCGATTATATCGATTAACTATGCCT
GGTGCTGGTGGTGGGAGGAAAGCATATTCAAAATTTAGTTAAAATATTTT
TTATTTTTGGTATTGCACTATTGGATTCAAAATACTTACGCTTTCATCAT
CTTCACAAGCCACGACGCTGATCTCAACTTTCTCTTCTTTTTCAATCAAA
TTCTCCATTTCAAATACAATTAGCTATATATTTCATTTCAAAAAGCTCAA
CAGTTTAAATTTCATGCTTTAATCGCCGCCATTTTGAATTTTGCTTTGAA
TTCAAGAATCGTGGCGCCGACGTTTTTGCCACGCCTAGGGGCTAAATCAC
GACGACGTGGTGCCGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034694XLOC_034694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055070-exon-scaffold_249-1575043694:58393..58748TCONS_00055070-exon-scaffold_249-1575043694:58393..58748Clytia hemisphaericaexon
TCONS_00055070-exon-scaffold_249-1575043694:51228..51459TCONS_00055070-exon-scaffold_249-1575043694:51228..51459Clytia hemisphaericaexon
TCONS_00055070-exon-scaffold_249-1510915933:58393..58748TCONS_00055070-exon-scaffold_249-1510915933:58393..58748Clytia hemisphaericaexon
TCONS_00055070-exon-scaffold_249-1510915933:51228..51459TCONS_00055070-exon-scaffold_249-1510915933:51228..51459Clytia hemisphaericaexon
TCONS_00055070-exon-scaffold_249-1491911889:58393..58748TCONS_00055070-exon-scaffold_249-1491911889:58393..58748Clytia hemisphaericaexon
TCONS_00055070-exon-scaffold_249-1491911889:51228..51459TCONS_00055070-exon-scaffold_249-1491911889:51228..51459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:51228..58748 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6372	12.871	7.5252	5.28836	15.1484	14.9631	8.06338	8.45019	7.33606	9.86856	9.57867	5.23681	6.66142	6.53003	6.05958	8.15709	7.80017	7.92289	4.57738	3.43623	5.24937	5.16506	12.6649	14.4416	5.92971	7.35516	4.74918	3.28765	11.6366	12.9144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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