TCONS_00055068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055068
Unique NameTCONS_00055068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055068 ID=TCONS_00055068|Name=TCONS_00055068|organism=Clytia hemisphaerica|type=transcript|length=1200bp
aaacaacaaaagaaGAGAAATGGATTTTCAAAACCGTGCAGGAGGGAAGA
CAGGTAGTGGCGGTGTCGCATCATGGTCGGAAACCAATCGTGATCGTCGT
GAAAGGTTGCGACAACTGGCTTTGGAAACCATCGATCTAAATAAGgatCC
ATACTTTATGCGAAATCACTTGGGATCGTATGAATGCAAATTGTGCTTGA
CCCTTCATAACAATGAGggAAGCTATCTGGCCCATACACAAGGAAAGAAA
CATCAACAGAATTTAGCACGACGTGCGGCCAAAGAAGCGAAAGAAGCACC
GAATCAACCGGCACCGGAGAAAACAAAAGTTTCGTTGAGGAAATTCGTGA
AGATCGGTCGCCCTGGTTACAAGGTTACCAAGCAACGAGACCCGGACACC
GGACAACATAGTTTACTTTTTCAGATTGATTATCCAGAGATAGGCGAACA
TGACCCAAAGCATCGCTTCATGTCAGCTTATGAACAACGCATTGAGCCTC
CAGACAAAGCTTGGCAATACCTCTTGGTGGCTGCCGAACCCTACGAAACC
ATCGGCTTCAAGATTCCAAGTCGTGAGATTGACAAACATGAGCAGCGCTT
TTGGACGCACTGGAACAAAGACACAAAACAGTTTTTCCTCCAATTCTCCT
TCAAACTGACTCATTCACAAATCAGCGCCATGCAGCGAGAAAATGACCAA
ATGCATCACAATAAGAACAATCGAAACAGCCGCCCGCCACCTTTACGCCC
ACCGCCCAGACACGAAGGTGGTGGTTTCGGATTTCCTCCTCGTGGACCAC
CTCCGATGAGAGGCATGCCACCGGGTGGAATGATGAGAGGACCGCCACCA
CGCCCTCCGCCTAACATGAACCAAGGAATGCCGCCCAGAGGACCGCCCCC
GCAAGGTCCACCTCCACCTATGAGAGGAGGTCCACCCCCACCTATGGGAG
GAGGTCCACCGCGCCCACCGCCCTCATTGATGTCTCTTCCTACACCACCT
TTACCTATGGGTGCAGCGGAGTTTGCTCCGCCTGATAACGCCCCACAACA
AGATGATGACGTCATGGACGAGGGAGAATGAAGATGATATTATGTTTTTA
ACGAAAGAAAGaacttttttaattgaaattctTCGCTGCGTTCATAGTTT
TTCTTATAAACCAGGTTTTTAGGAGATTTCGAGTCATAGGTTATAGAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_249:65884..84548+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055068 ID=TCONS_00055068|Name=TCONS_00055068|organism=Clytia hemisphaerica|type=transcript|length=18665bp|location=Sequence derived from alignment at scaffold_249:65884..84548+ (Clytia hemisphaerica)
aaacaacaaaagaaGAGAAATGGATTTTCAAAACCGTGCAGGAGGGAAGA
CAGGTAGTGGCGGTGTCGCATCATGGTCGGAAACCAATCGTGATCGTCGT
GAAAGGTTGCGACAACTGGCTTTGGAAACCATCGATCTAAATAAGGTACG
AAACAcacattttttgtgttttattaTGGCCTCTTTTACATTGTTATAAA
TTTTCATactcttttattattattatataaaaaaagatcaGGAGTTTCTC
AGATGTGAATTTGAGCAAAATCTGAAGGTTATAACTTCAACCACATGATT
CTTACAGACGATGCTTTTTAACATTGAAGTAAAATGAGATGGCTAACAGC
ATgtccaattcatgatatgcaccactgcaatgacttcacgaaattatgca
acttttctggtttttattttcacccaatacgtcactttttatacgtgacg
tattgggtggaaaatcttaAAAGTTCTCCGAAGACTCTCCAgagtgcata
tcatgaattgttaaATCTCTTCTAATCAAAATAGTTCTTCTTCTAGACCA
ATAAGGCCAATTCAATATACATTAAAGGaagtccgccaaattaagtgccc
gccaaaatttattttttccaccatctgccaaattaaattcccgccaaatt
aatttcattgccgatccgccaaattaaattctcgccaaaatttcttcctt
taatgtaccTGCTATCAACCCTTAACTGCGTTGTCGGCTTTTGAGGAGTC
TGGTAATGAATATACAAAGAGTAATTAAGAGTATATCGGTGTATCCCCTT
TCCTATTTGCGCCAAACCTGGGACGttgaatgctgaggtggagcgccaca
cctactctcagctcctaGTAACTTATTGTCCAATCCAAGCTACTCATTCG
CTGAGTTGGCNtggcgtgtttttatagaataactggccaaattcgatatt
tttttataagcacattatcaattacttaggtattagcttttctcgagatt
ggctctttcattctttactattttttgaacaaagatgcataactataaac
cctcgaatgtgacggagcccgattttcaaaaaaaaattttgggcaaattt
gggtcaaaaaacGGCTAAAAAATGGGTTTTTTGGACTTTGTGAAAAATTG
GATCATTAATTTTTTCTGATTTTTtgcaggaaagtaaggtaccatcatag
gtaaaatacggttcaagcagatttttgcaaaaaaattgtagttggctcaa
aaaacgcatgtttatttataagaatcactattaataagcatacatcaatg
ttcttaatcaaatttttttatgagatagNNaaattttggttgcttggctt
gtttttatagaaaaactggccaaattcaatatttttttataagcacgcta
tcaattacttaggtattagcttttctcaagattggctcttttattcttta
tgattttttgcacaaagatgcataactataaaccctcgaatgtgacggag
ctcgatttttggaaaaaaaatttgggggtaaatttcagctaaaaaacggc
taaaaaaagggttttttggacttttcagctcaaaaaacgcatatttatct
attagaatcactattaataagcatacatcaatgttcttaaaattactgaa
ttttttgatgagatgtttttttgctctcaaagtcttgaatatgaaagaat
atttcaagagcatgaaattttggtttctaaacgtgttttttttataagaa
acaaacgactaattttgatagatcgtcactatttgtgttctgaatgattg
tttaatggtcacgcttatgtagatatcaattatatatgtgttaaatgcat
aaccaggtaggtccataaaagtatcacttgtttatattgtttttaagtga
cgtattgggtggaaaattctaaaagttctccgaagactctccagtggtgc
atatcatgaattgttaaATCTCTTCTAATCAAAATAGTTCTTCTTCTAGA
CCAATAAGGTCAATTCAATATACCTGCTATCAACCAGTCAACTCTTAACT
GCTGTCGGCTTTTAAGGAGTCTGGTAATGAATATACAAGGAGTAATTAAG
AGTATATCGGtgtatccccttttctatttgcgccaAACCTGGGACGttga
atgctgaggtggagcgccacacctactctcagctcccggTAACTTATTGT
CAAATCCAAGCTACTCATttgctgagttggcggtgaccggagATCGAAAC
CATGAAAGACCATgaattgtaaggcgaatgcctGCTGACTCAGCCAGCCG
GTACAAACTTCAAATATAAGTTCTTCAAATAAGTCATCTTTCCTGGTAAA
CTCAAACCCAGTCTTAGCACACATAAGATGTTTATAGTTGTGTTTCCTTG
GTCGTGATTTAGAAACTTGGTCTAGGGATATAGTATTAATaaaggtgtgg
cgctccacctcagcattcaaCGTTTCAGGTTTGGCGCCAATAGAAAAGGT
GATACTATTGGCCTTTATATTTCTATTATATTAATTATATTATAAAGGTC
GGTAGTTTGTAGGTGTATTTATgaatttgaatgatttttttcttttcagg
atCCATACTTTATGCGAAATCACTTGGGATCGTATGAATGCAAATTGTGC
TTGACCCTTCATAACAATGAGGTTAGTTTCAAATTCACTCTGTTTATCCA
CCaactacccagctggcacacaacgttgttttaacgttcaaataacgtta
tttggacgttatgaatgtaacatggacgttgttttgacgttgtgtgccgt
ctgggtaAATGTGAAGAATGGACCATTCCATCTTATATCCAAACAGGTGG
TGCTGGTGGACGTACATTTCCAGGGGAGAATCTGAGAACAATTTCCACCG
GATCTAAAGAAGTgtttttatttctcttttttctgattttttgtacaaag
atggagggcaagattctctatagaatggctgaagtggtttttcccggaaa
tttctcattcgccttaaaaaacggattttcgtattttggggaaattccct
tcaaccaaataagaaaatatagcttttctcaatgttgactcgttattttt
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaaaatatatttgggcaaatttgggccaaaaactgccc
aaaaatagggttttttggactttgtgcaaaatcctgtcattacttttttc
tgatttttttgtacaaagattaagggcaagattctctaaagaatggctga
agtggtttttcccggaaaattcttattcgccttaaaaaacggattttcgt
attttgggcaaattccctttaaccaaataagaaaatatagcttttctcaa
agttgactcattatttttttctgattttttgaacaatgatgcaaaatggc
aatgcctaaaatgtgacggagcccgattttcgacNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTcgacaaaaaatatatttgggcaaatttgggccaaaaactgcctaaaa
atagggttttttggactttgtgcaaaatcctgtcattacttttttctgat
gtttttgtacaaagatggagggcaagattctctaaagaatggctaaagtg
gtttttcttggaaaattattattcgccttaaaagacggattttcgtattt
tggggaaattccctttaaccaaataagaaaatatagcttttctcaatcaC
TACTAGGTCTGAAAACATCAATTGTGGACACGGTTGATGTTTTTATCCAC
AGTCGatcatttttatggacagtttttactttttcttgacAGTCAATGCC
TGGAAATGGACAGTCAATTCTTTTCATTAACTGTCGAGATTATTTAATTG
ACTGTTTGTTGATATCTGATAGTGACTGTCGATAGCTTTTAACTCAACTG
TCGATGGATAATGTTTTATATCAGTTATTGTCAGTCAATCTCAGTTATCA
ACAGTCAATCTCAGATATCGACAGTCGATCTCAGATCAATATCACAGTTC
ATTAAGAGTATTGCCTGTCTATTTCCAGGCATCAACTgtcaagaaagaga
aaaaactgtccttaaaaatgattgactgtggataaaaaacatcaaccgtG
TCCACAATTGATGTTTTCAGACCTAGTAGtgaatgttgactcataatttt
tttctgattttttgcacaatgatgcaaactGGCAATGCCCgaaatgtgac
gaagccagattttaaaggaaatttttttggcgcaaatttgggccaaaaac
agcttaaaaggttttttgggcctgaatggtttaagtgatttttgtaaacg
gggaaattcctttttaccattttacattattcaacacacaagctttattt
ttccattctgaatttttgtacaatcaTTGTCacgtttttcttattttcat
ctgatgttaatcattaggtaggtccattcagcatgttgcttatTTTTAAT
AAGGAAAACATTTTGGTAGTTAAATTATTTTAAGGATTGCTCTAAATAta
ctgtttatttttttttgattgagaCCGACGGGGCTCGATGATTCGATCTT
Aacgtttaaattcaaaatgaatggaaaactctgaatgtttcattttctga
aattttagggAAGCTATCTGGCCCATACACAAGGAAAGAAACATCAACAG
AATTTGTAAGTACTTTCTGACAAGCAAGTATTTCATGTAAATTCAGGGAT
GGAGCAGGGTGGAGTTGATTCCTGATGTAAACAATGCTGGGAATAATAGT
TACTAAATTCAATACTGGTATCGCTGATCTATCATACAATATAGAAGTCA
ATATATAGAGCCAATGTTCCTTGTTTTCATTGAGTGTTGTTACAACTTAT
AATTCGTCAagaaaaaacacatttttaatGAATATTTTGGACTTACAGGc
ctttttcaacataaaaatgaaTTGTTTTGACAAGGTTCTTTACCTAGTTG
AGTCTCTATAAGTCGAGCACacacacggggaacacaaatttgtttgagtt
aacctttccagcgcgcaacatttttataTCTTCAGCCCGTCTGCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNccttatatttttggaaagccctACCTTTCCCCTTTCTA
AATATGTTTAACTGAGTACTTCAAACAATTTTGGACAGAAATTATGAAGC
CAGACAAAAGGTATATGAAGAAACTATGTCGCGAAAAGTCATTTTTTggt
gcaaaacttcaaaaaattatagagaactgaaaaattaataaaaccactta
cttttttctttagaaggtTTCTTTATAGTTAGGTAATACAattccatact
tttgaaaagccaaataaaactctaaaacactttTATAAACCCTTACTTTC
ATAGCTAAATTTCTGCCTCTTCCAGTTTCACAAAATCACGCAACACAGCT
TGGTCTaccatttctatttttgaaaaatgttgcgtCATACCAAAACAGAC
CCCGATTGTTTCTTATCGGAAAATTCACGCTGATTCCGATTTTTTAATCG
GTTTTACCTTACATCTGACGGTTGGGGAGTAATCCGACCAAATATAAAGG
TCACCTTAAAaacgtatcagatacgtctttcggaacgtatggcgaacgta
tcagatacgtctttcgggGCGGAAaggttaaggaaatttcgaattatgga
gTAAAGCATTGTTGGTTGAAGGGgtgagaaaacttgttcgagttgagGAC
AAGAATAAGCAATTCTATCAAATGTGCCAAAGTCAACGCTACGTGGTTTC
TAAGGAAAGACACCCAACAAAATTAACCtcatttttgcatatttttagaA
TCAAATGGCAGAATTCCGGCTATTTAGGGTTGATGCCGATAAGAAAGGTT
TCTTGATCATCCGCTCTAAATGAAACTTTAATAATCTGTCATCTTTatga
aacagaaaaaaaagttaaacagtTTCATGTACTACCTTAAGTTATAttaa
cttattttggcgggaactaattttggcggatttggcgaatttagacgaat
taaatattttgctcacttgccaaaattaatttttttgtttgcttgcctaa
ataacccctgaaattcatcaaaattgctcaaaattaggcaaaatagaaca
gatttacgctgtcattcaccaaaattagttcccgccgaaattaaatcatt
tttaggatatttgctgCCCGCCAAAATTACTATGCGttcttctgtttttg
ttttttgttctgTTTCATATAAATAAACCATAGAGAACGAAGATTCACCA
CAAgacaaaacttagtcggccttaattattagtcggccctaattttagtc
acatcctcaaaatttagtcactaataagggccgactaataattaaaaTCG
ACTAAAAAATggggccatttctaaatttacaacaagatggaaaaaaggag
aaaacttaaaatactggaaaataaggaaagcGTAATTATAAACTATTAGT
TTGGCCCAAacttttagtcggccttaattttagtcggtccaaatttttag
tcggccctaattttagtcatcaagccaaaatttagtcacttagggccgac
taagttttggccgataaggtatctgtGATCTATTAGTTTTTCTGATAAAG
AAACTGGTTGGTGCAAATAATCTTATTCTGTTAcctgtttttaacttttt
ctctCAGAGCACGACGTGCGGCCAAAGAAGCGAAAGAAGCACCGAATCAA
CCGGCACCGGTATTTTCTTACGTTTCTATTCTTTGTGAATGCTAatctaa
aatttgaaagaagTCCCGACGCTCCTAAAGTGTGTCTCAAAAGTGTGTCT
CAAAAGTGTGGAcactttagttttttttgacattttctcagcAATCATTC
ATGCAATGTTAGAAAGTTATACATCGTTATTTCCAAGGAGAATAATCTAA
AATAAtctaaaagataaaatattttggaaaattgaaaaatcgtttatttt
ttagattattctccttgtaaatatttttccaaCGGTGTATTTCCTGAGAG
TATTCTTGTCAACTATAAGAGCTGTAATGTTTTCAttgtatttataattt
ttacCTTACATGTGcagtagactcccggttattcgaaccTGCACTTATTC
GAATAGTCCGGTTATTCGAAGCGAGATGGCGTTCCTCTTGGCTCTGCTTA
CCCAACCCAGGCAAAAACACTCTCGGTTATTCGAACTTCAACTATTCGAA
CTTTCAGTTATTGGAAGCGATTTTGTTTCCCCTTAGGGCCATTTACAATC
TTCAAGCAGAATCTTGTGTTTATTACGCTCAATTGAACTAAAAGCGCCTT
AAATACTGACCTAAAAATGCCTCAAATACTTCAGAACAGTCTATCACAAA
CTGAAAATCTTGAGGGGAAACGAActtttcagttattcgaactcCCAGTT
ATTCAAAGTAAATTCTTATCCTCCATATCCCGAatacacttctttttttt
ttataagaaccagtaaatttttgttgaggctcggctgttcttattttttt
ggcacttcgagcctcaaattgttcttatcctgttcttatttttagggcaa
atttgggggtatttttgggtttgaaccctaatttcattaatttggcCCTT
ATTTTACCTAAAACTCAGCAACTCCAGGCtcgattgttcttaaattgttc
ttatttttggcatttttgagcctcattgttcttataaaattgttcttata
aaaaaaaaagtgtaaccGGCATAATTCAGCATAACCATAAGTGTATTTTT
CCTTGTTtcgtttgaaaaaactttaacCTTCCATTCCAGGAGAAAACAAA
AGTTTCGTTGAGGAAATTCGTGAAGATCGGTCGCCCTGGTTACAAGGTTA
CCAAGCAACGAGACCCGGACACCGGACAACATAGTTTACTTTTTCAGGTC
AGCATTGCATCATTTTACgaaaaaaactgattatgatttgccttccttta
aaaaaatttccggtTCTCTTATTTTGCGCGAAAGGAacgaaatcttttac
atgaatTGAGCGGCATGAAGCGCTTATCGCCATGTACAATTGATAAATGT
TATCCTTACTGAATGTCATAAGGCGccgttttttccaaaatgaatTGTCA
AAGTGCTGCTTTTTCAAAAGCTGATATACAGTTTATAGCTACAACTTAAT
GAATGAAAGGGAGAAAGTGCCTACTTCGCAACATTAAAAAACacgacaaa
tttcaaaaataacgaaaaatttcactccgaccgaaagtgactgtacttAC
ATTCCTTTTTGTGTATAACGACTAACAGTTTATAAatacgcatgcgtttt
aactTGTTtcgaaaatgaaacaatagatgcCAAGTAGACACTTTCTCTAT
GTAATGTTGGgccaaaaatcattaaaaagtcgTAAACAATTCtgattttg
ttttcattatcGGTTTATTTACTAAATATAATCTTGGCTTATTTGGCTaa
tggggccgtccacatagtacgtactaTGTACATGGTATTATTTCGCCCAA
TATTTCTTTCTAGATTACATAATTCAATAGAAGCTCTTCCTGTTCCTGAT
AATGGGCTAATTTTAGGTTGTTCCTGACTtaatttgaagaagtttgagtt
tatcgatccagtgatattcatattggaagtttatcgtcgCTACGAGATTt
atacgtttggctacgtttcgagagattttTCTCCAATCATTGGGCTAATT
TGAAGTTGTTCTTGACTTTATTAGAATTTCTTCATCTTCTTATTGGATTG
ATTAGAGATCGGTTAGCTTTACTTAACATCAATTTTAGaaatatatagct
tccatgaAAGATATGCATTCGACCATATTGATCAGTAAACAatccaatca
aatgtcgctatttacgcgccacggataaaaaaataaaagaagttcttctt
cttcttgttcaTAGATTGATTATCCAGAGATAGGCGAACATGACCCAAAG
CATCGCTTCATGTCAGCTTATGAACAACGCATTGAGCCTCCAGACAAAGC
TTGGCAATACCTCTTGGTGGCTGCCGAACCCTACGAAACCATCGGCTTCA
AGGTGCGTCTCTTTTCTCCTATCATAGcttatactagacgtcacccgcgt
tatttctacgcaattaacgtttattccactttgcgactttttcgcaTGTT
TTGAGCCAAACATTGAGCCAAACATAACatttttgacttcatttttaacT
TTCGAAACTCCTTCcgtagcaaaaaaaaatcgaatttgccgttcgttcgt
tcgtccgtccgtccgtctgttacctgcttttctcaggattggctcattag
ttttttctgatttttggcacaatgatgcaaaatgacaatgcccaaaatgt
gacggagcccgattttcgaaaaaaataattttccggccgaaaatgccgga
aaaactggtttttggcattttctcgagattttatcattagttattttaga
ttttttgctcaaagatgcgtattaacaatgcccaaaacatggccaagtcc
gatttttgacaaaaacatttttccggcggaaattgccgtttttctgggtt
ttcatttgacttttttcttataattggttgttttttcattcaaaaatatt
attaatagcaatgcccaccatcaagcatgtttcgaTATTTTTCCGGATAT
TTTTCTGGTCTGCATTTCTGCTCTTTCACAtctaaaggttcaatctcaaa
atcagtgtctttgaaaattggagattttgaaattctgttatgtctttgag
attggcctttttgtcatatgaaaacATTGAATATTCCTCTATACNCCTTt
gagattggcctttttgtcataATATGAAAACATTGACTATTCCGCTACAT
GAAAAAagggcaatctcaatctcaaagatgaccaTCACTCACAGTAAAAc
tttgtaagtttttattttgtaaggtactaattttgagattgaacctttag
tcatgtaAACGACGACATGGAAATGTGGTTTTGTTCCGAATCTTAtaatt
gtctttttcttttttctttgaatacaGTTGATTTTCAAGGGAAATAGAAT
TTTGATCGTATAAGGGAATtcatcgaatagtagaatgtcgtTTATAAAAG
TCATTTTTGCTGCCTTTCCTTTAGATTCCAAGTCGTGAGATTGACAAACA
TGAGCAGCGCTTTTGGACGCACTGGAACAAAGACACAAAACAGGTCAGTT
ACAGACTCATAGTGCGGAATGGGGTCTGAACCCCCTTTCttaaatgaccc
cccccccagaaaacttcctttcatgaagaccaaatttcataaaagtgctt
taaaataatctacaatatatatgtaagccccccttcttaaactacccccc
ccccttttcatgaaaattttttatcctcCCTTCCccttcatttttttgaa
aggttttcccccccccccttaagaaaggggtcCGAACTCCAAACTATGAT
ACTAGAGTAGTCTATagaaccatagtcattataaaaacactggtctggga
GGCTTTtgtcttcttttatttttaaaagatagagcttacttattttgcaa
atattttgatcttgtgattagaaaatagaccaatcccaagaagaaatttt
ggtaacgtgatcaaaaagtatgcgaatcgcaacttgtctttggtttgtaa
caaaagaaaattgaacaaaaacctaaaacaatacattgccagaccggggt
tttttataatgactatgatagAACGTGGCTTACATTGACTTCAAACCTCG
AAAGGGCTAGACCCGACACTCCTGGAAGGGAAATggagctacttatttcc
catctggcaaacaaaaaaacgaaaacgtGACtaaaacgccagattgaaag
tacAACTTTTTGCCAGATTTCGAAACATATGCcgcttaaaaataaagaaa
ggtaaattcaatccgtcattttCGATGCGGCGCAAATCTTAAGGCGTCAC
TTTCAAGATTCATGTCTAGctccttcggggctttaaactcgatgGGTGTT
TTATCATAATGTGATTCCAGCTGTCTCGGANcttcccccctggcaccaaa
atctgattccccccatcttcctgggggggggatgatcccatgaAAACTCT
GATGTTCGCTATTTTTAAATCGATTTTCTTtggcctggaagtctataaac
ccctcccgaattgaactattcgaataaatttatcaatttgcccaaaagcg
actttttcgcccgaactttaaattgctgaaaaggaggaattaaccaaaat
tatcaagattgtagacttttcaaggttttgaaaCAGCAACCCTTCATTTT
TTTCCGTTTTAGTTTTTCCTCCAATTCTCCTTCAAACTGACTCATTCACA
AATCAGCGCCATGCAGCGAGAAAATGACCAAATGCATCACAATAAGAACA
ATCGAAACAGCCGCCCGCCACCTTTACGCCCACCGCCCAGACACGAAGGT
GGTGGTTTCGGATTTCCTCCTCGTGGACCACCTCCGATGAGAGGCATGCC
ACCGGGTGGAATGATGAGAGGACCGCCACCACGCCCTCCGCCTAACATGA
ACCAAGGAATGCCGCCCAGAGGACCGCCCCCGCAAGGTTTGTATTTTTTG
CCTTATCGTTCGATTTCGGTGAACACCATCTAAAGATGTGTTAATAATGA
TTTCGAAAAACACTCTGCTATTGAGAtaacttactcttaggttccaaata
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tcttttttaaagattggccgggttggaaaagtatgaatttctttgtacat
attttacctaccccaaatatttaggaggctgagttttaaacaaatggtcc
AGTTGAAACGaatgataaatgtatcaaggtctgttttatttaccccctgg
tgactacttaacaaaagagacttaactcgatgttacaatccaattattga
aagtttgtctcggcctttttataatgagcgagacatacgttctctgatta
cgcaattttcatattgacattttcgaggcattttgatgtaactggcAGAT
GGGAAAGGgtgattgataaaaaattgttaggTAATTCAGTCAAGATCCTG
AGTATggaacgaccctgcctatgccccggacagtccggggtttttttgat
gcgtgcccggggtccgtatgatttgtttttgagagactaccccggacgcc
ccagacagcccgcgcggtcgctttttatagaatcgctgaccgcgcgggct
tttttctaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAAACCAtggcgtcctccagctttttggtccccCCTAAT
ATGAGCTAAAACCCCCCATCTGGCCTTcccccccacctgtctttaaaatt
tgtgctcccccaattgggaaatccccctagccgtattgtataagggttgc
gaagtgatgatccagactcgcctcaattcgcaagctactatagcaaaaaa
aagactctcaaaatccctagaaagacaggctcataagcctgaatgcccag
acacaccaggaaggtctgtGTTTATCGCATTACTCCCCCactaggtagag
gactgaatataccccctattcgcctttctccccccatcaagcttgaaatt
ttcacttcccccctggcaccaaaatctgattccccccatcttcctggggg
ggggatgatcccatgaAAACTCTGATGTTCGCTATTTTTAAATCGATTTT
CTTtggcctggaagtctataaacccctcccgaattgaactattcgaataa
atttatcaatttgcccaacagcgactttttcgcccgaactttaaattgct
gaaaacgaggaattaaccaaaattaacaatatattttgaccaagattgta
gacttttcaaggttttgaaaCAGCAACTNAGGACGACCCTATAGATAAGG
ACAGAGATCTGTATCTCTGCTCACTAGATGGGTTTTTTCCGATCCAGTAG
ATTAAATGAAGATCAGTTGGAGAAAAGGTcattaaatagaccttttcata
aattgcgtcaagaacatcacttgcctcgttttgaaattgttGCCAAGGTG
ATTAATTCCCAGTGCATTTTATTACatctactttctattcataaaatcat
ttaatgtctcaagaatcactatggaaattgtttgaatacgaggcaagtga
tgttcgtgacgtaatttacaAAAAGGTCTATCAAGGACGTCCCAATATAT
AAGGACGGCTCTAAAAATAAGGATCCTTAGATTTAGGGTACGTCTTGCCG
TACTGCNCCCGTTtaataaaatcttgaaaattttccaccccccccctgtt
tatttggaacctaagagtacttgtATATTGTGCACTTACAACAATCCTCT
GTGCCGTTATTTTCCGCACACACTGCAGATTCTTGATGATTGTATATGCT
GCAGATGGTACCACActctaaattgaaattattttccaTGAAATATGATG
ATAACGACCTGATAACGAtagttaaagggttaagaaaTAGTCCGAGAAAG
TCTATCAAGCTAGCATGCAAATACTTGATTTAAAAACAGCTACATTTCGT
ACAGTGTCATATACATCATTCAAGCAAATGTAACATTGGTTTGCTTTTAT
TCTCTATCAGGATACATTGcatagttcggaagggggtcactaccccccct
accctagagctaccccccccctaccctaggttcttcccccttttaaaatt
tgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGATTAATTCC
CAGTGCATTTTATTACatctactttctattcataaaatcatttaatgtct
caagaatcactatggaaattgtttgaatacgaggcaagtgatgttcgtga
cgtaatttacaAAAAGGTCTATCAAGGACGTCCCAATATATAAGGACGGC
TCTAAAAATAAGGATCCTTAGATTTAGGGTACGTCTTGCCGTACTGCTGT
TAATGATAATGTATAATTGTATACGAGTTTCTGCTCCACTTTTTAGGTCC
ACCTCTATCAATGGGAGGAGGTCCACCTCCACCTATGAGAGGAGGTCCAC
CCCCACCTATGGGAGGAGGTCCACCGCGCCCACCGCCCTCATTGATGTCT
CTTCCTACACCACCTTTACCTATGGGTGCAGCGGAGTTTGCTCCGCCTGA
TAACGCCCCACAACAAGATGATGACGTCATGGACGAGGGAGAATGAAGAT
GATATTATGTTTTTAACGAAAGAAAGaacttttttaattgaaattctTCG
CTGCGTTCATAGTTTTTCTTATAAACCAGGTTTTTAGGAGATTTCGAGTC
ATAGGTTATAGAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034693XLOC_034693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055068-exon-scaffold_249-1491911889:65884..66028TCONS_00055068-exon-scaffold_249-1491911889:65884..66028Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:65884..66028TCONS_00055068-exon-scaffold_249-1510915933:65884..66028Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:65884..66028TCONS_00055068-exon-scaffold_249-1575043694:65884..66028Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:68483..68554TCONS_00055068-exon-scaffold_249-1491911889:68483..68554Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:68483..68554TCONS_00055068-exon-scaffold_249-1510915933:68483..68554Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:68483..68554TCONS_00055068-exon-scaffold_249-1575043694:68483..68554Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:70742..70788TCONS_00055068-exon-scaffold_249-1491911889:70742..70788Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:70742..70788TCONS_00055068-exon-scaffold_249-1510915933:70742..70788Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:70742..70788TCONS_00055068-exon-scaffold_249-1575043694:70742..70788Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:72991..73042TCONS_00055068-exon-scaffold_249-1491911889:72991..73042Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:72991..73042TCONS_00055068-exon-scaffold_249-1510915933:72991..73042Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:72991..73042TCONS_00055068-exon-scaffold_249-1575043694:72991..73042Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:74123..74230TCONS_00055068-exon-scaffold_249-1491911889:74123..74230Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:74123..74230TCONS_00055068-exon-scaffold_249-1510915933:74123..74230Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:74123..74230TCONS_00055068-exon-scaffold_249-1575043694:74123..74230Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:75248..75385TCONS_00055068-exon-scaffold_249-1491911889:75248..75385Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:75248..75385TCONS_00055068-exon-scaffold_249-1510915933:75248..75385Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:75248..75385TCONS_00055068-exon-scaffold_249-1575043694:75248..75385Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:76458..76526TCONS_00055068-exon-scaffold_249-1491911889:76458..76526Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:76458..76526TCONS_00055068-exon-scaffold_249-1510915933:76458..76526Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:76458..76526TCONS_00055068-exon-scaffold_249-1575043694:76458..76526Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:77646..77919TCONS_00055068-exon-scaffold_249-1491911889:77646..77919Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:77646..77919TCONS_00055068-exon-scaffold_249-1510915933:77646..77919Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:77646..77919TCONS_00055068-exon-scaffold_249-1575043694:77646..77919Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1491911889:84254..84548TCONS_00055068-exon-scaffold_249-1491911889:84254..84548Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1510915933:84254..84548TCONS_00055068-exon-scaffold_249-1510915933:84254..84548Clytia hemisphaericaexon
TCONS_00055068-exon-scaffold_249-1575043694:84254..84548TCONS_00055068-exon-scaffold_249-1575043694:84254..84548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:65884..84548 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0224299	0.170274	0.0131191	0.16646	66.3763	39.0848	8.78666	28.7784	1.44696	1.60905	0	1.18937e-09	0.743789	0	0	0	0	0	0	0	0.656175	0.00382029	1.01737	0.0516572	1.4943e-05	0.00288162	0.00101326	3.03874	0.822471	9.32444
Blast
[Close]
BLAST of TCONS_00055068 vs. Swiss-Prot (Human)
Match: SF3A2 (Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 2.109e-112
Identity = 181/214 (84.58%), Postives = 196/214 (91.59%), Query Frame = 2 
Query:   20 MDFQNRAGGKTGSGGVASWSETNRDRRERLRQLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQQNLXXXXXXXXXXXPNQPAPEKTKVSLRKFVKIGRPGYKVTKQRDPDTGQHSLLFQIDYPEIGEHD-PKHRFMSAYEQRIEPPDKAWQYLLVAAEPYETIGFKIPSREIDKHEQRFWTHWNKDTKQFFLQFSFKL 658
            MDFQ+R GGKTGSGGVAS SE+NRDRRERLRQLALETID+NKDPYFM+NHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ NLARRAAKEAKEAP QPAPEK KV ++KFVKIGRPGYKVTKQRD + GQ SLLFQIDYPEI E   P+HRFMSAYEQRIEPPD+ WQYLL+AAEPYETI FK+PSREIDK E +FWTHWN++TKQFFLQF FK+
Sbjct:    1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKM 214
The following BLAST results are available for this feature:
BLAST of TCONS_00055068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3A22.109e-11284.58Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF... [more]
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