TCONS_00055067 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055067
Unique Name	TCONS_00055067
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2522

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_249:59011..64176+
coding sequence from alignment at scaffold_249:59011..64176+

transcript sequence

>TCONS_00055067 ID=TCONS_00055067|Name=TCONS_00055067|organism=Clytia hemisphaerica|type=transcript|length=2522bp
taaataatcgagctttgaaaaaatcttgagtatcgattacctatcgattc
tatcggttaatcgatatctaatccatcgattatatacttatcgattattt
atcgattactcaagattatcgattatatcgattaactacgtcTGGTCTGA
AAGGCTGAacaaaaatagttaaaaaaacaacaaagttaccgttttattta
gagaaggggcattattgaatggtttgcctttttggaggAGCATTATTAAN
TTGTCGCTGGTTTGGATGCAGGGGATGGCTTCCCAACACAAGACGCCCGA
TCCAATGAAGGTCTTGATTCGCCGGAAAAAACACCGCAGAAAGATCAAGA
TGGTCGTTTCTACTGTCCGCTGTGTCCGAAAAGTTTCAAACACCGTTATG
ATTACATCATGCATCAGAAGACTCACAGCGGCACAAACCCCTATTTCTGC
AAAACCTGTGATATATATTTCCCAAGGAAATCAAAGTTAACGAAACATTT
GAAAACGAAAAGCCACCAAAGGAAGTGTTCCAACCAGACTATGGAGGATT
CTACTGAGGAAAGTTGTTTGGATGATACCACTGATGAACCACCTGCCAAA
CGGAATCGCCAGGACTTCGAGCAATCTGTGGATGAAAACCAAAAGCCTTT
GGAATGTCAACATTGCTGCCAGAGATTCCCCAGTGAAGAGGAGAAAAGCA
GTCACCAATGTTGTCTGTTGAGAGACAAGAAACCGAAAATCCAGCCTAAA
GAATATCTCAAATCGCGTGCACATTACAAGAAGTTCGTCTGTCCGTTGTG
CGACGTGGAGTATTTCTCTTACGTCGAACTAAACCAACATTTAACAACCG
AGCATACGGTTACGGAAGAGACGACGTTCCCTTGCAAGACGTGCGACGTC
ACTTACCAATCGAAAGACAAATGGGTCCAACATCTAAACGACACAAAACA
CATGTCGTTACTACAACCTTATTTCCGCGCCACATGTTGTGAGAAGACAT
TCAAAACACATAAAGCGTGTTATAATCACGAGCGTGTCCACACTCGGTCC
AGTCCCTACCACTGTGCGAGGTGTGATCGATATTTCTTGAAACGACACCA
TCTGACTGTTCATTTGGAGGGTTGTGTAGACAGCGAACGACCCTACCAAT
GTCCCTTCTGCGTGCGAACGTATAAGACAAGCAGCCAGTTACAACATCAT
TTAGAAGGCGGTCATTCCTTCCAATGCGCGACGTGTCTGGAAAACTTCAC
GTGTAAACCGCACCTTAAGACACATTTAGAAGAATCGCCAACTTGCATCA
AAAATATTTGCTCCAGATGTAACAATTTGGAATTTGAAACCTACGAACAG
CTTTTAAAACATAAAGAAGAATCTCATTCGACGAAAGGCCGTAAAACGTT
TTCGTGTTCCGATTGCGGGAAAACGTACTGCGAGGCGTTCAAGTTGAAGC
AACACATGAAGTGGCACGAGACAGGTCGGTATCCGTACCAATGTACCGTG
GAAGGATGTACTATCATCTGTTACAAGAAGTCGAAACTGGATTCACACCA
TAAGCGGGTCCATCTGAAACTGATGGAATACGAATGCAGTGCATGTGGCG
AAGagttcaaaacaaagaaaaatttggaCGAACATTCGAGCAAAGTTCAC
GGTACCGAATCATTCACATGTCCAGTATGTGATAAAGAATTTTACAGTCT
TCGAACGTTCAAAGCACACGAACTAACACACTCTAAACTTCCAACGCAAA
CTCATTTGAGCAACACTTCAGCAATCAACAATAGTAGAAACACTACTAAC
GGAGACGATGTTTTGCTTNCACTTCAGCAATCAACAATAGTAGAAACACT
ACTAACGGAGATGACGTATTGCTAGATTTAAGATGTCTGACTAATTTGAG
CATGGCTTTGGATGGTAGTGATTCAATGAGAGAATCGCGCGGTGATGTTG
ACGCGGAACAGAAGATGGATCTCAAAATCCCAGCCATTATGAAAAGCGAA
CACTTGACAAACTTCTCTACTGAAGATGCCGAGGAAGTCGCCGGCACAGA
AATCGAGGGTGTCGAAATCGAAGCAGAGAACGAGATGGCGGTTGATGATA
TTCCACCACCCACCGCGCAATCACCGCCCATTGTTACAGAGGGCGGGGAG
GAGATCGTGATTGTTGAAGGGGAGCGAGCGAAAGAATCATTACGTCAACT
GTTGGCACAGCAACAAGTCACCATCAAAATCGCTTCTTCAGAGGACCACC
ACAACGAAGGGGACGGCCCGCATACGACCGTTACCTCGGAAACCATGCAA
CAGCTCAAAAGCACATTGTCCGATCTTCTTTCCGCCACCCTGGGTGGGCA
ATCGTCTTCTGAAACGGCAACATCGACCACGGGTGGATTGGAGATTCAAG
GTCAACCTCACCCAGATGACGACGGTGTTGTAGAGATTGTTTTGATGCCC
ACCTCGTCTGACCAGGCATCTGATAATGCTGATCCCAGTGCCTCGGAAGA
ATGAAAGCGCTCGAATTAACTG

Run BLAST on NCBI

protein sequence of TCONS_00055067-protein

>TCONS_00055067-protein ID=TCONS_00055067-protein|Name=TCONS_00055067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MHQKTHSGTNPYFCKTCDIYFPRKSKLTKHLKTKSHQRKCSNQTMEDSTE
ESCLDDTTDEPPAKRNRQDFEQSVDENQKPLECQHCCQRFPSEEEKSSHQ
CCLLRDKKPKIQPKEYLKSRAHYKKFVCPLCDVEYFSYVELNQHLTTEHT
VTEETTFPCKTCDVTYQSKDKWVQHLNDTKHMSLLQPYFRATCCEKTFKT
HKACYNHERVHTRSSPYHCARCDRYFLKRHHLTVHLEGCVDSERPYQCPF
CVRTYKTSSQLQHHLEGGHSFQCATCLENFTCKPHLKTHLEESPTCIKNI
CSRCNNLEFETYEQLLKHKEESHSTKGRKTFSCSDCGKTYCEAFKLKQHM
KWHETGRYPYQCTVEGCTIICYKKSKLDSHHKRVHLKLMEYECSACGEEF
KTKKNLDEHSSKVHGTESFTCPVCDKEFYSLRTFKAHELTHSKLPTQTHL
SNTSAINNSRNTTNGDDVLLXLQQSTIVETLLTEMTYC

Run BLAST on NCBI

transcript from alignment at scaffold_249:59011..64176+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055067 ID=TCONS_00055067|Name=TCONS_00055067|organism=Clytia hemisphaerica|type=transcript|length=5166bp|location=Sequence derived from alignment at scaffold_249:59011..64176+ (Clytia hemisphaerica)
taaataatcgagctttgaaaaaatcttgagtatcgattacctatcgattc
tatcggttaatcgatatctaatccatcgattatatacttatcgattattt
atcgattactcaagattatcgattatatcgattaactacgtcTGGTCTGA
AAGGCTGAacaaaaatagttaaaaaaacaacaaagttaccgttttattta
gagaaggggcattattgaatggtttgcctttttggaggAGCATTATTAAN
TTGTCGCTGGTTTGGATGCAGGGGATGGCTTCCCAACACAAGACGCCCGA
TCCAATGAAGGTACATCTTTTTTAGGCTAGAGACATTATGCAAACACagt
cattaaaaaattaatcaaatttcGAAGCCAAAGGGCATCTTAGACTATAA
CGCTCGCAGGTAACAGTtcaacgaaatgaagccattcaaTTGGTTGCATG
GGacgtaaaaattgaatttaaccaatagaatgacttcatttcgtttcgaa
GCAAAATGGAACCGTAGCGTGTGTCAGTTTTTTATAATATAAGCAAAAGA
TTCTAAATGAAATTAGGCCCCCTCCCTATGTAATAAAAAACAATACGTTA
AATTAAATCATTTATATGAAAAACAAGCAGtaacatgttttttattttta
tttaactatttcatttttttaacttaattggaaacaaaaaaaatttttct
attgttgACATACCCATACCTAAGGCATATTATATATCCTTACAATGTCT
TCTCTCATTTTATGTCAATTTTAAAACAGATAATTGTTTGTGTATTATTT
GTTGCAGTGGTATATGGCATGAAATCTGCTTATTTTTCAGTGTTAAAAGT
TCCCTTCcaacggatttccgtctcagcgAAGTATATGAAGAtgcttttta
cgtttttttgtcgTTGACGTAGGCTTTGACCGTAGCATGAatgtagagca
tccagctacggtgcgcaagggtgtgagttcgatccccagccgggccatac
caaagattctcaaaatggtacttgatgcctctctgcttgatgctcagcaa
ctaaagagacggatcaaggttaagtggagaaatccagggaaaggagtgtc
gccctcccctaccttcgggtagacagctatacggaAAGGGAGTCTTCGGG
TCGCcgtcgactgcggtcgcaaacttacttactttttttaCTTAGGCTTT
GCTTTAATCACTGCTTATTTATTCCACAGGTCTTGATTCGCCGGAAAAAA
CACCGCAGAAAGATCAAGATGGTCGTTTCTACTGTCCGCTGTGTCCGAAA
AGTTTCAAACACCGTTATGATTACATCATGCATCAGAAGACTCACAGCGG
CACAAACCCCTATTTCTGCAAAACCTGTGATATATATTTCCCAAGGAAAT
CAAAGTTAACGAAACATTTGAAAACGAAAAGCCACCAAAGGAAGTGTTCC
AACCAGACTATGGAGGATTCTACTGAGGAAAGTTGTTTGGATGATACCAC
TGATGAACCACCTGCCAAACGGAATCGCCAGGACTTCGAGCAATCTGTGG
ATGAAAACCAAAAGCCTTTGGAATGTCAACATTGCTGCCAGAGGTTTTCA
AATCTAcacttttcttcttttaaaggccgatctccactttcgcgcgaaaa
tgAGCGAAAACCTTTTCTTAATCATTTTTGCCAGCAGAAAAAATTACGTC
ATTAAAAAGTTTCGAGCGAAAAAATAAACCGTTACGTCATATTtgcccaa
tggaattgcttcattttttaaaccGACAAATGGCCTTGGTCAAAATCTTT
CACTCATtttgcgcgaaagtggagaccggccatAAGGTGAACTATTTTCA
TGACACTCCTTAAAAATTGTTGGGAACTGGACCTCTGCATTCTATtcgaa
agaaattaaatttgttgttctacgggcccgatcGACTTTTTTTTCACTGG
AATTCCAAAATATACTCAGGTTTCAACAGCTGTAAATGTtgcagccaatt
cgattgacttccaaatttgccatactcaccaactttgccaaatctacaat
ttcaatgtcaaaagatcatagcttcatggcaaatttgtacatcgctacgc
cgccattatgatttccgttttgtgatgcttagtcagcagttttctgtcgg
cgtttgtaaagtgaacgattttttaaccaatcaaattgccgatcggtatt
gttttgctttagcattggaaggtcttctatttttaaaatctttggcaaaa
gtggcaaaattggaacgaaaagaacacaggtctcgtgggaatattgtttt
gtatggagacgtatggaggtaagttccaaaaatgccaagaatgccaagaa
tgccagattcaccacatcttttttatttggcatttatggcactcaaattt
tgccacatttgccaaatttttgtcaagtcgaatgcaaaataattggcaat
cagggcaaaaatggcatattttgaagtcaatcgaattggctgttgCATAT
CAAGTTTTTCGAAAAATCGCATACCAGgcgcaaaatgccattttagtGAG
CAACCGGACCAAATTACCCGACGATCTGCCTAACTGCTTAGTTTTTATGT
TTAACATCATGACTAATGTTCCGGTTCGAGTTGCAGAAAGATTCGAGATA
TAGAGATTCTCGACTGTACATTGTAAAACATTTTCcaataaagggataat
cagatggctTAAGATATTTGACCTTCTGTATGAGGTCCCAGTGTCTTTCG
AAGTCGAGAtatcataatttgaaatttttaaagatggGTTCTTACATGTT
CCgtcaaatttctattgttttcttgtCAAAAACTTGTTACTATAGAATCT
GATTATTCGTTATTTTACATGTACACTGGCCACTAATTACTAATTACTTA
TGATATTTTGAGGTCTTGCTCTGGTTAATAGAAGGAATCCATTTTCCAAA
TATCTCAAATCAATTGATCATCcttttagaccatgttcacacgttactgt
tccgttgcCCTCCTGTATGATTTTTGTTGCGGATCGAGTGTATTCATATA
GTATTCATATGTATTCatagttccgttccgatgaaaaaagtggagcgaaa
ccgtttcgatctttttttctttgtaaacgtcttctttttgacgtttagaa
ttttgaattttgacgttcatTTGTTTCGGAActgtttcgtttcggaacgg
aaccgtaacgtatGAACCGTAACGTATGAACATGGTCTTAAACATCAATT
TTAGATTCCCCAGTGAAGAGGAGAAAAGCAGTCACCAATGTTGTCTGTTG
AGAGACAAGAAACCGAAAATCCAGCCTAAAGAATATCTCAAATCGCGTGC
ACATTACAAGAAGTTCGTCTGTCCGTTGTGCGACGTGGAGTATTTCTCTT
ACGTCGAACTAAACCAACATTTAACAACCGAGCATACGGTTACGGAAGAG
ACGACGTTCCCTTGCAAGACGTGCGACGTCACTTACCAATCGAAAGACAA
ATGGGTCCAACATCTAAACGACACAAAACACATGTNGCGACGTCACTTAC
CAATCAAAAGACAAATGGGTTCAACATTTAAACGACACAAAACACATGTC
GTTACTACAACCTTATTTCCGCGCCACATGTTGTGAGAAGACATTCAAAA
CACATAAAGCGTGTTATAATCACGAGCGTGTCCACACTCGGTCCAGTCCC
TACCACTGTGCGAGGTGTGATCGATATTTCTTGAAACGACACCATCTGAC
TGTTCATTTGGAGGGTTGTGTAGACAGCGAACGACCCTACCAATGTCCCT
TCTGCGTGCGAACGTATAAGACAAGCAGCCAGTTACAACATCATTTAGAA
GGCGGTCATTCCTTCCAATGCGCGACGTGTCTGGAAAACTTCACGTGTAA
ACCGCACCTTAAGACACATTTAGAAGAATCGCCAACTTGCATCAAAAATA
TTTGCTCCAGATGTAACAATTTGGAATTTGAAACCTACGAACAGCTTTTA
AAACATAAAGAAGAATCTCATTCGACGAAAGGCCGTAAAACGTTTTCGTG
TTCCGATTGCGGGAAAACGTACTGCGAGGCGTTCAAGTTGAAGCAACACA
TGAAGTGGCACGAGACAGGTCGGTATCCGTACCAATGTACCGTGGAAGGA
TGTACTATCATCTGTTACAAGAAGTCGAAACTGGATTCACACCATAAGCG
GGTCCATCTGAAACTGATGGAATACGAATGCAGTGCATGTGGCGAAGagt
tcaaaacaaagaaaaatttggaCGAACATTCGAGCAAAGTTCACGGTACC
GAATCATTCACATGTCCAGTATGTGATAAAGAATTTTACAGTCTTCGAAC
GTTCAAAGCACACGAACTAACACACTCTAAACTTCCAACGCAAACTCATT
TGAGCAACACTTCAGCAATCAACAATAGTAGAAACACTACTAACGGAGAC
GATGTTTTGCTTNCACTTCAGCAATCAACAATAGTAGAAACACTACTAAC
GGAGATGACGTATTGCTAGATTTAAGATGTCTGACTAATTTGAGCATGGC
TTTGGATGGTAGTGATTCAATGAGAGAATCGCGCGGTGATGTTGACGCGG
AACAGAAGATGGATCTCAAAATCCCAGCCATTATGAAAAGCGAACACTTG
ACAAACTTCTCTACTGAAGATGCCGAGGAAGTCGCCGGCACAGAAATCGA
GGGTGTCGAAATCGAAGCAGAGAACGAGATGGCGGTTGATGATATTCCAC
CACCCACCGCGCAATCACCGCCCATTGTTACAGAGGGCGGGGAGGAGATC
GTGATTGTTGAAGGGGAGCGAGCGAAAGAATCATTACGTCAACTGTTGGC
ACAGCAACAAGTCACCATCAAAATCGCTTCTTCAGAGGACCACCACAACG
AAGGGGACGGCCCGCATACGACCGTTACCTCGGAAACCATGCAACAGCTC
AAAAGCACATTGTCCGATCTTCTTTCCGCCACCCTGGGTGGGCAATCGTC
TTCTGAAACGGCAACATCGACCACGGGTGGATTGGAGATTCAAGGTCAAC
CTCACCCAGATGACGACGGTGTTGTAGAGATTGTTTTGATGCCCACCTCG
TCTGACCAGGCATCTGATAATGCTGATCCCAGTGCCTCGGAAGAATGAAA
GCGCTCGAATTAACTG

Coding sequence (CDS) from alignment at scaffold_249:59011..64176+

>TCONS_00055067 ID=TCONS_00055067|Name=TCONS_00055067|organism=Clytia hemisphaerica|type=CDS|length=4401bp|location=Sequence derived from alignment at scaffold_249:59011..64176+ (Clytia hemisphaerica)
ATGCATCAGAAGACTCACAGCGGCACAAACCCCTATTTCTGCAAAACCTG
TGATATATATTTCCCAAGGAAATCAAAGTTAACGAAACATTTGAAAACGA
AAAGCCACCAAAGGAAGTGTTCCAACCAGACTATGGAGGATTCTACTGAG
GAAAGTTGTTTGGATGATACCACTGATGAACCACCTGCCAAACGGAATCG
CCAGGACTTCGAGCAATCTGTGGATGAAAACCAAAAGCCTTTGGAATGTC
AACATTGCTGCCAGAGATTCCCCAGTGAAGAGGAGAAAAGCAGTCACCAA
TGTTGTCTGTTGAGAGACAAGAAACCGAAAATCCAGCCTAAAGAATATCT
CAAATCGCGTGCACATTACAAGAAGTTCGTCTGTCCGTTGTGCGACGTGG
AGTATTTCTCTTACGTCGAACTAAACCAACATTTAACAACCGAGCATACG
GTTACGGAAGAGACGACGTTCCCTTGCAAGACGTGCGACGTCACTTACCA
ATCGAAAGACAAATGGGTCCAACATCTAAACGACACAAAACACATGTCGT
TACTACAACCTTATTTCCGCGCCACATGTTGTGAGAAGACATTCAAAACA
CATAAAGCGTGTTATAATCACGAGCGTGTCCACACTCGGTCCAGTCCCTA
CCACTGTGCGAGGTGTGATCGATATTTCTTGAAACGACACCATCTGACTG
TTCATTTGGAGGGTTGTGTAGACAGCGAACGACCCTACCAATGTCCCTTC
TGCGTGCGAACGTATAAGACAAGCAGCCAGTTACAACATCATTTAGAAGG
CGGTCATTCCTTCCAATGCGCGACGTGTCTGGAAAACTTCACGTGTAAAC
CGCACCTTAAGACACATTTAGAAGAATCGCCAACTTGCATCAAAAATATT
TGCTCCAGATGTAACAATTTGGAATTTGAAACCTACGAACAGCTTTTAAA
ACATAAAGAAGAATCTCATTCGACGAAAGGCCGTAAAACGTTTTCGTGTT
CCGATTGCGGGAAAACGTACTGCGAGGCGTTCAAGTTGAAGCAACACATG
AAGTGGCACGAGACAGGTCGGTATCCGTACCAATGTACCGTGGAAGGATG
TACTATCATCTGTTACAAGAAGTCGAAACTGGATTCACACCATAAGCGGG
TCCATCTGAAACTGATGGAATACGAATGCAGTGCATGTGGCGAAGagttc
aaaacaaagaaaaatttggaCGAACATTCGAGCAAAGTTCACGGTACCGA
ATCATTCACATGTCCAGTATGTGATAAAGAATTTTACAGTCTTCGAACGT
TCAAAGCACACGAACTAACACACTCTAAACTTCCAACGCAAACTCATTTG
AGCAACACTTCAGCAATCAACAATAGTAGAAACACTACTAACGGAGACGA
TGTTTTGCTTNCACTTCAGCAATCAACAATAGTAGAAACACTACTAACGG
AGATGACGTATTGCTAGATGCATCAGAAGACTCACAGCGGCACAAACCCC
TATTTCTGCAAAACCTGTGATATATATTTCCCAAGGAAATCAAAGTTAAC
GAAACATTTGAAAACGAAAAGCCACCAAAGGAAGTGTTCCAACCAGACTA
TGGAGGATTCTACTGAGGAAAGTTGTTTGGATGATACCACTGATGAACCA
CCTGCCAAACGGAATCGCCAGGACTTCGAGCAATCTGTGGATGAAAACCA
AAAGCCTTTGGAATGTCAACATTGCTGCCAGAGATTCCCCAGTGAAGAGG
AGAAAAGCAGTCACCAATGTTGTCTGTTGAGAGACAAGAAACCGAAAATC
CAGCCTAAAGAATATCTCAAATCGCGTGCACATTACAAGAAGTTCGTCTG
TCCGTTGTGCGACGTGGAGTATTTCTCTTACGTCGAACTAAACCAACATT
TAACAACCGAGCATACGGTTACGGAAGAGACGACGTTCCCTTGCAAGACG
TGCGACGTCACTTACCAATCGAAAGACAAATGGGTCCAACATCTAAACGA
CACAAAACACATGTCGTTACTACAACCTTATTTCCGCGCCACATGTTGTG
AGAAGACATTCAAAACACATAAAGCGTGTTATAATCACGAGCGTGTCCAC
ACTCGGTCCAGTCCCTACCACTGTGCGAGGTGTGATCGATATTTCTTGAA
ACGACACCATCTGACTGTTCATTTGGAGGGTTGTGTAGACAGCGAACGAC
CCTACCAATGTCCCTTCTGCGTGCGAACGTATAAGACAAGCAGCCAGTTA
CAACATCATTTAGAAGGCGGTCATTCCTTCCAATGCGCGACGTGTCTGGA
AAACTTCACGTGTAAACCGCACCTTAAGACACATTTAGAAGAATCGCCAA
CTTGCATCAAAAATATTTGCTCCAGATGTAACAATTTGGAATTTGAAACC
TACGAACAGCTTTTAAAACATAAAGAAGAATCTCATTCGACGAAAGGCCG
TAAAACGTTTTCGTGTTCCGATTGCGGGAAAACGTACTGCGAGGCGTTCA
AGTTGAAGCAACACATGAAGTGGCACGAGACAGGTCGGTATCCGTACCAA
TGTACCGTGGAAGGATGTACTATCATCTGTTACAAGAAGTCGAAACTGGA
TTCACACCATAAGCGGGTCCATCTGAAACTGATGGAATACGAATGCAGTG
CATGTGGCGAAGagttcaaaacaaagaaaaatttggaCGAACATTCGAGC
AAAGTTCACGGTACCGAATCATTCACATGTCCAGTATGTGATAAAGAATT
TTACAGTCTTCGAACGTTCAAAGCACACGAACTAACACACTCTAAACTTC
CAACGCAAACTCATTTGAGCAACACTTCAGCAATCAACAATAGTAGAAAC
ACTACTAACGGAGACGATGTTTTGCTTNCACTTCAGCAATCAACAATAGT
AGAAACACTACTAACGGAGATGACGTATTGCTAGATGCATCAGAAGACTC
ACAGCGGCACAAACCCCTATTTCTGCAAAACCTGTGATATATATTTCCCA
AGGAAATCAAAGTTAACGAAACATTTGAAAACGAAAAGCCACCAAAGGAA
GTGTTCCAACCAGACTATGGAGGATTCTACTGAGGAAAGTTGTTTGGATG
ATACCACTGATGAACCACCTGCCAAACGGAATCGCCAGGACTTCGAGCAA
TCTGTGGATGAAAACCAAAAGCCTTTGGAATGTCAACATTGCTGCCAGAG
ATTCCCCAGTGAAGAGGAGAAAAGCAGTCACCAATGTTGTCTGTTGAGAG
ACAAGAAACCGAAAATCCAGCCTAAAGAATATCTCAAATCGCGTGCACAT
TACAAGAAGTTCGTCTGTCCGTTGTGCGACGTGGAGTATTTCTCTTACGT
CGAACTAAACCAACATTTAACAACCGAGCATACGGTTACGGAAGAGACGA
CGTTCCCTTGCAAGACGTGCGACGTCACTTACCAATCGAAAGACAAATGG
GTCCAACATCTAAACGACACAAAACACATGTCGTTACTACAACCTTATTT
CCGCGCCACATGTTGTGAGAAGACATTCAAAACACATAAAGCGTGTTATA
ATCACGAGCGTGTCCACACTCGGTCCAGTCCCTACCACTGTGCGAGGTGT
GATCGATATTTCTTGAAACGACACCATCTGACTGTTCATTTGGAGGGTTG
TGTAGACAGCGAACGACCCTACCAATGTCCCTTCTGCGTGCGAACGTATA
AGACAAGCAGCCAGTTACAACATCATTTAGAAGGCGGTCATTCCTTCCAA
TGCGCGACGTGTCTGGAAAACTTCACGTGTAAACCGCACCTTAAGACACA
TTTAGAAGAATCGCCAACTTGCATCAAAAATATTTGCTCCAGATGTAACA
ATTTGGAATTTGAAACCTACGAACAGCTTTTAAAACATAAAGAAGAATCT
CATTCGACGAAAGGCCGTAAAACGTTTTCGTGTTCCGATTGCGGGAAAAC
GTACTGCGAGGCGTTCAAGTTGAAGCAACACATGAAGTGGCACGAGACAG
GTCGGTATCCGTACCAATGTACCGTGGAAGGATGTACTATCATCTGTTAC
AAGAAGTCGAAACTGGATTCACACCATAAGCGGGTCCATCTGAAACTGAT
GGAATACGAATGCAGTGCATGTGGCGAAGagttcaaaacaaagaaaaatt
tggaCGAACATTCGAGCAAAGTTCACGGTACCGAATCATTCACATGTCCA
GTATGTGATAAAGAATTTTACAGTCTTCGAACGTTCAAAGCACACGAACT
AACACACTCTAAACTTCCAACGCAAACTCATTTGAGCAACACTTCAGCAA
TCAACAATAGTAGAAACACTACTAACGGAGACGATGTTTTGCTTNCACTT
CAGCAATCAACAATAGTAGAAACACTACTAACGGAGATGACGTATTGCTA
G

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034692	XLOC_034692	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055067-protein	TCONS_00055067-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055067-exon-scaffold_249-1491911889:59011..59320	TCONS_00055067-exon-scaffold_249-1491911889:59011..59320	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1510915933:59011..59320	TCONS_00055067-exon-scaffold_249-1510915933:59011..59320	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1575043694:59011..59320	TCONS_00055067-exon-scaffold_249-1575043694:59011..59320	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1491911889:60240..60603	TCONS_00055067-exon-scaffold_249-1491911889:60240..60603	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1510915933:60240..60603	TCONS_00055067-exon-scaffold_249-1510915933:60240..60603	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1575043694:60240..60603	TCONS_00055067-exon-scaffold_249-1575043694:60240..60603	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1491911889:62265..62541	TCONS_00055067-exon-scaffold_249-1491911889:62265..62541	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1510915933:62265..62541	TCONS_00055067-exon-scaffold_249-1510915933:62265..62541	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1575043694:62265..62541	TCONS_00055067-exon-scaffold_249-1575043694:62265..62541	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1491911889:62606..64176	TCONS_00055067-exon-scaffold_249-1491911889:62606..64176	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1510915933:62606..64176	TCONS_00055067-exon-scaffold_249-1510915933:62606..64176	Clytia hemisphaerica	exon
TCONS_00055067-exon-scaffold_249-1575043694:62606..64176	TCONS_00055067-exon-scaffold_249-1575043694:62606..64176	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_249	supercontig	scaffold_249:59011..64176 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.036	27.089	12.8269	8.65472	43.8223	34.5069	25.7871	28.0572	13.1621	17.891	15.6861	12.2196	11.9268	12.4127	11.676	13.0889	16.0141	14.7761	9.82797	8.3532	11.7601	12.3539	29.8003	27.8833	19.6277	20.1274	6.38448	5.21355	23.6189	27.5606

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR022755	Znf_C2H2_jaz

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Blast

[Close]

BLAST of TCONS_00055067 vs. Swiss-Prot (Human)
Match: Z585B (Zinc finger protein 585B OS=Homo sapiens GN=ZNF585B PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.387e-30
Identity = 125/481 (25.99%), Postives = 208/481 (43.24%), Query Frame = 1

Query:  301 SNEGLDSPEKTPQKDQDGRFYCPLCPKSFKHRYDYIMHQKTHSGTNPYFCKTCDIYFPRXXXXXXXXXXXXXQRKCSNQTMEDSTEESCLDDTTDEPPAKRNRQDFEQSVDENQKPLECQHCCQRFPSEEEKSSHQCCLLRDKKPKIQPKEYLKSRAHYKKFVCPLCDVEYFSYVELNQHLXXXXXXXXXXXFPCKTCDVTYQSKDKWVQHLNDTKHMSLLQPYFRATCCEKTFKTHKACYNHERVHTRSSPYHCARCDRYFLKRHHLTVHLEGCVDSERPYQCPFCVRTYKTSSQLQHHLE---GGHSFQCATCLENFTCKPHLKTHLEESPTCIKNICSRCNNLEFETYEQLLKHKEESHSTKGRKTFSCSDCGKTYCEAFKLKQHMKWHETGRYPYQCTVEGCTIICYKKSKLDSHHKRVHLKLMEYECSACGEEFKTKKNLDEHSSKVHGTESFTCPVCDKEFYSLRTFKAHELTHS 1734
            +N  L + EK   +++     C  C K+F +R + I+HQ+ H+G  PY C  C   F +KS LT H +               + E+S +         ++      Q +   +KP +C HC + F S+ +   H+         +I   E        K +VC  C   + +   L  H   + T T E ++ C  C   +  +   + H    + +   +  +    C K F        H+++HT    Y C  C + F ++  L VH +     E+PY C  C R +   S    H     G   ++C+ C ++FT K  L  H          +C+ C    F     L KH +++H+  G K + CS+CGKT+ +  +L  H + H TG  PY+C+  G +    KKS+L  H +R+H     Y C+ CG+ F  + NL++H +   G + + C +C K F     F  H+ +H+
Sbjct:  337 NNSNLITHEKIQSREKSS--ICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGRAFTQKSALTVHQRI-------------HTGEKSYICMKCGLAFIRKAHLITHQIIHTGEKPYKCGHCGKLFTSKSQLHVHK---------RIHTGE--------KPYVCNKCGKAFTNRSNLITH---QKTHTGEKSYICSKCGKAFTQRSDLITH----QRIHTGEKPYECNTCGKAFTQKSNLNIHQKIHTGERQYECHECGKAFNQKSILIVH-QKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYECSDCGKSFTSKSQLLVHQPVHTGEKPYVCAECGKA-FSGRSNLSKH-QKTHT--GEKPYICSECGKTFRQKSELITHHRIH-TGEKPYECSDCGKSFT--KKSQLQVH-QRIHTGEKPYVCAECGKAFSNRSNLNKHQTTHTGDKPYKCGICGKGFVQKSVFSVHQSSHA 769

HSP 2 Score: 97.8265 bits (242), Expect = 7.820e-21
Identity = 114/464 (24.57%), Postives = 179/464 (38.58%), Query Frame = 1

Query:  358 FYCPLCPKSFKHRYDYIMHQKTHSGTNPYFCKTCDIYFPRXXXXXXXXXXXXXQRKCSNQTMEDSTEESCLDDTTDEPPAKRNRQDFEQSVDENQKPLECQHCCQRFPSEEEKSSHQCCLLRDKKPKIQPKEYLKSRAHYKKFVCPLCDVEYFSYVELNQHLXXXXXXXXXXXFPCKTCDVTYQSKDKWVQH--LNDTKHMSLLQPYFRATCCEKTFKTHKACYNHERVHTRSSPYHCARCDRYFLKRHHLTVHLEGCVDSERPYQCPFCVRTYKTSSQLQHHL---EGGHSFQCATCLENFTCKPHLKTHLEESPTCIKNICSRCNNLEFETYEQLLKHKEESHSTKGRKTFSCSDCGKTYCEAFKLKQHMKWHETGRYPYQCTVEGCTIICYKKSKLDSHHKRVHLKLMEYECSACGEEFKTKKNLDEHSSKVHGTESFTCPVCDKEFYSLRTFKAHELTHS 1734
            + C  C KSF        H + H+G   Y C  C   FP  S L+ H K  + +R              C D    +   +++     Q +   ++   C  C Q F  + +  +H+         +I   E        K + C  C   + S  +L  H   +   T    + C      + +    + H  +   +  S+       T C K F        H+R+HT   PY C+ C R F ++  LTVH +     E+ Y C  C   +   + L  H     G   ++C  C + FT K  L  H          +C++C    F     L+ H +++H+  G K++ CS CGK + +   L  H + H TG  PY+C    C     +KS L+ H K +H    +YEC  CG+ F  K  L  H     G + + C  C + F     F  H+  H+
Sbjct:  186 YKCNECGKSFFQVSSLFRHHRIHTGEKLYECSECGKGFPYNSDLSIHEKIHTGER-----------HHECTD--CGKAFTQKSTLKIHQKIHTGERSYICIECGQAFIQKTQLIAHR---------RIHSGE--------KPYECNNCGKSFISKSQLQVH---QRVHTRVKPYICTEYGKVFSNNSNLITHEKIQSREKSSI------CTECGKAFTYRSELIIHQRIHTGEKPYECSDCGRAFTQKSALTVH-QRIHTGEKSYICMKCGLAFIRKAHLITHQIIHTGEKPYKCGHCGKLFTSKSQLHVHKRIHTGEKPYVCNKCGKA-FTNRSNLITH-QKTHT--GEKSYICSKCGKAFTQRSDLITHQRIH-TGEKPYECNT--CGKAFTQKSNLNIHQK-IHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHT 601

HSP 3 Score: 83.5741 bits (205), Expect = 2.335e-16
Identity = 93/372 (25.00%), Postives = 150/372 (40.32%), Query Frame = 1

Query:  628 VDENQKPLECQHCCQRFPSEEEKSSHQCCLLRDKKPKIQPKEYLKSRAHYKKFVCPLCDVEYFSYVELNQHLXXXXXXXXXXXFPCKTCDVTYQSKDKWVQHLNDTKHMSLLQPYFRATCCEKTFKTHKACYNHERVHTRSSPYHCARCDRYFLKRHHLTVHLEGCVDSERPYQCPFCVRTYKTSSQLQHHLEGGHSFQCATCLE---NFTCKPHLKTHLEESPTCIKNICSRCNNLEFETYEQLLKHKEESHSTKGRKTFSCSDCGKTYCEAFKLKQHMKWHETGRYPYQCTVEGCTIICYKKSKLDSHHKRVHLKLMEYECSACGEEFKTKKNLDEHSSKVHGTESFTCPVCDKEFYSLRTFKAHELTHS 1734
            V   +K   C  C + F  + E  +HQ   +R+K  K                 C  C   +F    L +H       T E  + C  C   +     +   L+  + +   + +   T C K F        H+++HT    Y C  C + F+++  L  H       E+PY+C  C +++ + SQLQ H       +   C E    F+   +L TH +       +IC+ C    F    +L+ H +  H+  G K + CSDCG+ + +   L  H + H TG   Y C   G   I  +K+ L + H+ +H     Y+C  CG+ F +K  L  H     G + + C  C K F +      H+ TH+
Sbjct:  151 VPTGEKLYVCIECGRAFVQKPEFITHQKTHMREKPYK-----------------CNECGKSFFQVSSLFRH---HRIHTGEKLYECSECGKGF----PYNSDLSIHEKIHTGERHHECTDCGKAFTQKSTLKIHQKIHTGERSYICIECGQAFIQKTQLIAHRR-IHSGEKPYECNNCGKSFISKSQLQVHQRVHTRVKPYICTEYGKVFSNNSNLITHEKIQSREKSSICTECGKA-FTYRSELIIH-QRIHT--GEKPYECSDCGRAFTQKSALTVHQRIH-TGEKSYICMKCGLAFI--RKAHLIT-HQIIHTGEKPYKCGHCGKLFTSKSQLHVHKRIHTGEKPYVCNKCGKAFTNRSNLITHQKTHT 489

The following BLAST results are available for this feature:

BLAST of TCONS_00055067 vs. Swiss-Prot (Human)

BLAST of TCONS_00055067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
Z585B	9.387e-30	25.99	Zinc finger protein 585B OS=Homo sapiens GN=ZNF585...	[more]

You are here

TCONS_00055067 (transcript) - C. hemisphaerica