TCONS_00055066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055066
Unique NameTCONS_00055066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055066 ID=TCONS_00055066|Name=TCONS_00055066|organism=Clytia hemisphaerica|type=transcript|length=3314bp
GGCTGTTATTGTAAATGGTTTTTGAGGAATACATGACGAGATAATGAAAT
CATGGATTTGTATTTAGACATCCCAGCGCAATCGTACCCTCAAATCCACC
CCAGCTTACTGACACCGCCCGAAACGCACACCCCGTACTCCTACTGTACA
TATGGCGGTAACGGCGGTGGCCCACTCGATGAAGAAACGTCACAAACGCA
CGGAGCGCTCGCCGTTTCCAGTTATCCTAACATGGAAGAAGTGTCTGCTG
CTAGGTACGAAAACCCTGTTGACGCACGCTACTCAAATCCAACGCAAGCG
CTCTCACGGGAACAAATGCAACGTTACCTGCGTGAACGGGACCACGAAAC
GGTAGTTGTATTACACGCTCGCGTCGCTCAAAAATCGTACGGAAACGAGA
AACGATTCTTTTGTCCGCCACCAAGTTTATATTTGAAAGGTAAAGGCTGG
AACAAACGAAGGGATCGCCATGTAGCGGAGAGCAAAACGAACGAAGCAAC
CAACAACCCAACGACCTCTTCATCATCATCGACCAACAACAATAGCAATA
ATAATAATGACGTCAATAATTGTTTATACCCACACGCGCTAGTGTACATC
GGCCCTTCCGAACATCCTCTAATGCAACAGTTAACCTTCGAAGAAAAGGT
TGACCAGGGATTCTGTTCTGCCAAGACGCTTTTCATTTCCGATTCCGACA
AACGTAAATCCTTCATCATTTGTACGCGACTTATGTACCCCAACGGAAAA
TCGCTCGGTGTCTTTGAGTCGAGGAGGATAAAGGTAATCTCCAAGCCGTC
AAAGAAGAAACAGTCCTACAAAAACACGGAACTATGTATATCATCCGGCA
CGACGGTGGCGTTATTCAACCGGTTACGTTCACAAACGGTCAGCACACGG
TACCTCAACATCGAAGATACAGATGACAATAGAAGCAATTTTCGCGCCTC
ATCACAACAATGGGGTGCATTCACTATTCATCTATTGGACGACGAAGAAG
AAGAGGGAGAAGAATTTTCAGTGCGCGACGGTTTCATTCATTACGGTCAA
ACTGTCAAACTAGTCTGTGTCCGCACACAACTCGCTCTCCCTAGACTGgt
cATACGTAAAGTTGATAAACAACAAGTATCGATCGATGCAGATGATCCAG
TTTCGCAACTCCATAAAGTCGCTTTCTATTTCAAAGACTCAGAAAGAATG
TACCTTTGTTTATCTCAGGAGAAAATTATTCAATTTCAGGCAACGCAATG
TCCAAAAGACCCGAAGAAGGAAATGATTACAGACGGAGCTTCCTGGACCA
TCATCAGTACTGATAAAGCGGAGTATTCATTTTGCGAGGGTGCTGGCCCT
GTGTCCGACCCTGTGACGCCGGTGCCCACAGTGAGGGCCATGCAGTTGAA
CGGAGGTGGTGACGTTGCCATGATTGAGCTGAAGGGAGAGAATTTCCAAG
CCGTCATGAAAGTCTGGTTTGCCGATGTTGAAGCAGACACTTACTATCGA
TGTTCCGAATGTATTATCGCTGTAGTACCAGATATTCGTTCATTTCCGGA
AGGTCGCGAAGATCCGCGTACGAAACTGACGGTACCAGTCTCGTTGGTCC
GACATGACGGCGTCATTTATCCGACGGGATTGAATTTTGCGTACACTCCG
GAACCATTGGAGCTCATTGAGATGGCGATGCGGAGCCGTGAGATGTATCA
TCAACCTCGATGAAGAAACGTCATGGTGAAGGTCTTATTCAAGAATGGTG
TTTGGTGGGCGTTGGCGGTGCTTGTATTCACGCCCTAAACTCACGCCCAT
GGTGTTGACACGGGATTGCTGCATATGGTGCTTCACGTATTGTTTTGTGT
TAAACAGAATTGTTATTCAAAAGTTTTGCATGGGCCGTGCTGGTATCCAC
GCCTTAATTTGCGTTGATAAGGGTAGATGTGACATTCACATGTTTATTGA
TACGGTGTGGGTGGATCACGATTCAGATCATTGTAACACAATCAAGCAAG
CACTGAAGGTGTACCGTAGAAGACTCGATACTTTGATATCATCTACATGC
GACGGGAGATTCTTCAACTCCGTAAGCTGCGCTCTCTGACTTGTGAGCTG
TGATGTCTTTTTTACGTTAGACAAGCACCCTATTTTCTGTGAGAGAGGAG
CGATGTTCTTCCAAGCTGTTCTACTCGTTCGCTCGTATTTTCTCGTCGGA
AAGGATCACACATGGTGTGAAAAGCTTTTCTCTGTACACCCAGCCTGCAG
TCAAAAAACATTTGGAGGTGTTAGTCTTTTTCTTAATCATAATATTGTTG
CTGatttttgttgttgaagagAAGAGCGAAGAGAGAAGAATGCTGGCTCG
TTTTTCTCCTTCCCAGCATCTCAAATTATaactgacgtcagcagaaaatg
ACAACACTCAAATGAACATTTTATCATTCAAGAAATTGTAGAAATCTATT
CATTCTCGTAATAACAAGGTGTATTTTCCTTAGCAACTAGGGTTATTTTC
CTTGGCAACCGTCGTTAAGGGATAATGGCAGGTTTCAAATTGAAACtaag
ttattttttttaattatcagtGTTTTTGTACTGATTTTTTTCCTTCCAGG
TTTTTCGTTCCTCTTTTATATAATGAAACACGACTTGAATTTTTCGAACA
TCGACGCTTCTGGTGGTGTTAGGTAGATGAAATGTTTTCAACAGAAGCAA
ATAAAGCCTTGTCACATAAAGTATAATGTACAaagtattcaaaaattttc
ctttcgAACTTAGTCTTTTGGGGAAACACTcttagcccggggggggggta
cttaggcaaaaataggtgctgggtatgtgcggacggtaagggtagggttt
ttcacctttcaaagtctctctaagggttacaaaaatcaggaaatttcaaa
gtagtctctctaagggtgggaaaaacacgatttttagaacaaaattttga
ttttgagagaaaaaattacaaaaaagagtaagggtaggaaatttttgaaa
atcagagaaaatttttcgaaaaagtctctctaagggtcactttttcacta
aaatttggtctctctaagtaagggtcggttttcggaggtcccgtccgcac
atacccctcatttaccaaccctagtaccccccccccgggactcttagtaa
caaaaaaacaaattatgaaATACGAAGAAAATGTAGAACcaaattattat
tgttattgattaTTATTTGTTGATTGTTTTTGTATAATAGAAAGATTTAA
TAATTATTCTAACAACAGACACACACTAGACtctactctctctctctctc
tctctctctctctc
Run BLAST on NCBI

transcript from alignment at scaffold_249:32468..45130+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055066 ID=TCONS_00055066|Name=TCONS_00055066|organism=Clytia hemisphaerica|type=transcript|length=12663bp|location=Sequence derived from alignment at scaffold_249:32468..45130+ (Clytia hemisphaerica)
GGCTGTTATTGTAAATGGTTTTTGAGGAATACATGACGAGATAATGAAAT
CATGGATTTGTATTTAGGTTCGtcgttgtttttctcttttcagtGGAGAT
GTATTTCCGTGATTTTGAGTCCTTGCATGGTCTTTGAAGATCTCCATTCT
AGCTCCAGGTCTATAAATCTAGACTGAGAATTCTCATTTTATCAAGTTTG
ACAAAATTTTTAACGTAGTACTTGCATTATATAGTTGAGTTCTTTGATGC
TATTGCACAGCGAGTAGCATTTAGTTTTAGCTTGTTAGAGTGCTNTTTCC
GTGATTTTGAGTCTTGCATGGTTCTTTGAAGATCTCCATTCTAGCTCCAG
ATCTAGATCTAGCTCTTGATAATTCTCATTTTATCAAGTTTGACAACATT
TTTAACGTAGTACTTGCGTTATATAGTTGAGTTCTTTGATGCTATTGCAC
AGTAGCATTTAGTTTTAGCTTGTTTTAGAGTGCTTATGTTGTTATCTTTT
CAAAGAAAGCTTTTAAACTCTTGAAACTTCCAGATGTCATTGACTTTTAG
GGAAGAAACCAACTAGATTGAGtacaaattcatttttttcattttacttt
CTTACATCAGACATCCCAGCGCAATCGTACCCTCAAATCCACCCCAGCTT
ACTGACACCGCCCGAAACGCACACCCCGTACTCCTACTGTACATATGGCG
GTAACGGCGGTGGCCCACTCGATGAAGAAACGTCACAAACGCACGGAGCG
CTCGCCGTTTCCAGTTATCCTAACATGGAAGAAGTGTCTGCTGCTAGGTA
AggaatttttgagtttttcttcGCATTTCTCTATTATAGAGACCTCTAAC
AGGCCTATAACACAGATATcttaaaacactagatagagctactctgtatt
tcccaagcaacggcagttgaagcaaaataatgcgccatctttgctgaaag
taggtcacagCTGGTACCGGCAATTTGCTCAACCAAACGGAAAAACTTGG
ATGGTGCGGAGCGACCATGCGAGAGAATGGACTTTGATcgatcaaattgc
cggcaccAAATTATGGTCTTCTTATTAAAGATTACGGATAATTTCGTTTA
AACAGTTGGgtcgaaaaaaatatatctaGTGTTTTGTATAAGTTATCTGT
GGCCTATAAGAAAAAGATATAGAAACAACACAAACCACTGGGTTAGAAAG
CGTTGAAAATTGttacttttttgtttaaaaaacactgTGGCTCCTAAAGG
AGAGAttgtttttgattaaaaacactTGTGTAATCGAATGGTAGGAGGTA
CGTTAAAAAAGATGTCCTTTAATGCTCTCACTTTTCAGGTACGAAAACCC
TGTTGACGCACGCTACTCAAATCCAACGCAAGCGCTCTCACGGGAACAAA
TGCAACGTTACCTGCGTGAACGGGACCACGAAACGGTAGTTGTATTACAC
GCTCGCGTCGCTCAAAAATCGTACGGAAACGAGAAACGATTCTTTTGTCC
GCCACCAAGTTTATATTTGAAAGGTGAGACAAGGtccaatttgtttttct
ttattcttGCAAACAACAACAGTTGACTCCTTCAATTTGAAGATCAAGAG
ACCAAGAATTAGTTttcaattaaagaaaaattcgaattatagaagttcga
gttagagagaaagagagagttaatacacctttcccgaattgttatttagg
ctttttgactttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCAGCA
TGCGCTTGTCTTTATAGGAGGAATAcaaatatatagttttcaatatggtt
tgaagaccttcgaaaaataccaaacaattcgggaaaggtgtattgttaAC
AACTCGATAGTTGAATTTTGTTCAGGTCCACTAGTTCTCCCTTCACTAGA
GATGTTCAtgtagtttttgttttgtttacagcCAAACAAAAGTTGTATTA
GTAGGGGTATTACAGGCACACTGTATTATAAAATCAGGAAGATTTTACCA
TGGTTGAATTCATTCAGCTCGGAAAATGCTGTATTACTACGCGCTTTtta
aaaaccaataaaattgataaccttataccttatcggccctttttgcgccg
gcccttattggcgttattcttgggctcgtggcgtaataagagccggtgtt
aaaagggccggcgtaaaaagggccgataaggtagtgcgtttattcgaagt
gatTATATACTCTTTTTTTTTCGACTTAAGGTAAAGGCTGGAACAAACGA
AGGGATCGCCATGTAGCGGAGAGCAAAACGAACGAAGCAACCAACAACCC
AACGACCTCTTCATCATCATCGACCAACAACAATAGCAATAATAATAATG
ACGTCAATAATTGTTTATACCCACACGCGCTAGTGTACATCGGCCCTTCC
GAACATCCTCTAATGCAACAGTTAACCTTCGAAGAAAAGGTATGTCGAGA
CTTTTATGTTAATTTTACcacctttaaaggttttgtttttacataagtgt
tcccgtttcatatcagacacatatttcatatcgggacagtgtcttcctat
tgttatattattctgatataagaaaaaaattgtttttcttttcctctttc
tgaccaatcttgctccacatccgtgtcaatccaatgtgaaaaagcttgta
aattaagatcgatgagtaagcaaacgatatcacttttatttaaaaacaaa
acctttaaaagggATAATCAGGTTGCTTGCCTGTAGATTACTTTAACGGT
TCTGAAGAAAACCTCCAAATCTTTTTTGGTGTTTTATGTTCTTTTTCCTA
ATAggtagagtcgatattttacgtggatagcccagttatctaggactttt
agacagtctttcgattatTTTGACGGGGTCCATTGCAAGCCGGCTCGGTT
ATCTAGGAACTGTTTTATGTTCACCAATGTTTCTGCAATTTAGTACTGAG
ATACGTAACCGTTAAACTCTCCTTTGACCTAAAGCGTAattaatcattta
ttttttcagcCGGGGACTTGTGAAAAACTCAAAGCCAACCGTTCCATTAA
TTTGACAATCTTCTTGTCTGTGTCGCTCTCTGATTTGCCTCGCTCATACA
AACAAGAAGTTTGAAAGAGATCGTTTCTTTTAATTCGATTAGTCTGTAAA
CTATTAAAAGGGGAAGGTTCAGGGTAATCAAGGGAACGTTTTTATTAATT
GGGCCAAATTATATGAGCAATTCTCCCTCAAATAGAGCGAAATTAGTTCA
AGAAATCTTCACAAATCTTTTTCTGATAAGCGCTTATACTGTATATTTAa
aggaatttgaaattttataaaacGTCCAATGATAGCGGGAAGCTATTGCG
ATGCTCTCCGTTGGATGCCATCTTTAGTTTAGTCCTAGCAACGAGGTATG
AGGTCAGCAACGCATTTGAACATGCGACTGCTATTAATATACCACGAGTA
AGGAAATGAGTTCTTTGCGCATACTTTAAATTCTCCAACCATTAATTTCG
TTTAATTACAAATGACTTTTCGATGTGGGAGAAATTTCTCACGCTCTTCT
ATATTACTCTTTTATACCTCtgtctttttttaataagaacagaATTTTCG
CcggggaaaaatatttgtcAATTGCTGGTACttgttggtaaacgcattaa
ggccggggaaaattttcgtcggggtaaaatattcgtcacttggccaaaat
ttcgtcacttttccccgacgaagttttccccgataaggtatgtaagaaca
taaggcttcgctggccagaatattaagaacaagttgagaacattttaagg
cttttacgGACTCTGAAACATCCGATTGGCttggaaaattgtaaaaaaat
ggctcacaaaatggttaaaataagaacactttattAACATTCTTAggttt
aaaacccaaaaagctaagaacatctgaaggcttcgagAAATTTAGGATTT
TCTTACAAAGAAAAGTCTGTTGCTTCTACCTCTCATACATATCTTTATCT
TTATCAATTAGAAATTTCCGATTTTAATGCGGGCTTCTGATAGATGTCAG
GAATTttcatgaaagaaaaacaagcacTTACTTGTAGCGTGGGAAGATTG
CAATTCTTTCATCTCATaataatttagaatttttgtacTAGAGCTCTGAT
AAAAAAACCCTTGAGTTGATTCTCATTGCATTCAAGATGTgttcacactt
tttttataatcgaacaaactatataagaacatgatgcttcgatggccaaa
atattaagaaccagttaagaacatctgaaggcttcaatcAAAGATTCTgt
atgttcttgtaaaaaacgtcTAAAGTTAAGGGTCTCGCCCTCGTGAGAAT
ATAATCAATCTGAGAAATACAATGTCAGATATTCGAAGTATTTTATTCCT
TTTCTTTGCCGGCATTTGTACCTAGGCACTTTTATAGAAATGCTATGCTC
TGTTTACCTTCACAACGTCCTAGCAACAAATCCGctctttttaatttcat
taaaagaaatgttttggacATTTCGCAATGCCGGTGAAGCTGGTTGGTAA
AGCATTCTTGAAAGAGTTTCTTTGCAGTAAAATTACCAGTTAAATGGTCA
TATGAACTAACCTTCATATAttcctggaccaagttactcaatcccggcca
accaaaaatctttgataGGAGTTtgttgaaattggtaccctTCAATAGCG
GTGAAGTTGCATCGAGAGAGCTAGATCTACTGTTCCTCGAATAGTTTTGA
TGATGTAACGCCGTTAGAAGTTAGTTTTTAACATTGCactggcttcttct
cgggtaccaattccaaaaaaacttcaatcaaagatggtggatatagcttg
gtccagggatataaaggtcagtggtcatATGTCGAGAATTTTCCCATTTT
ACAAATGTTTTTGCAATACAGTTAACTCGAACTTAAagggaaatttaatt
tgttcgaattacaaagaATTTCGAAATTTAGAAAGCAAATTTTGCGGAGG
TTTCTCCGCTACAGGAACTGATAAAAGGTTTGAATTATAGGAGTATTCAG
ATAAgagaagttcgaattagtgagagtcCAATGTACAACTGTACTAAGgt
accaaaaaataaatttatacaCGGAATTACAGGGTGTttgactaccttaa
gggaactattttttgcgggaactaatttttgctgttcgcagttcaagatt
taatatttaatatttgcggaaacttaattttgcggatttctcacttgaaa
gaaaattagagccgtactgtgaattattatcgacctttgtttttcgcatt
ttaaaaattttggacctaaatccgcaaaaaccagaaaatttagttcccgc
aaaaattagttcccttaagggaACATAATTCATTTATTCATTGATTTTGA
TTATGACAACTTCATTCATATTATCATCTTCCGGTCCCATCCTAAAGTTA
AATTCCttgtaaaatactttctataaatcgaattgttctgtaattcgaac
aaattcgACTTTCTGTTCGacttcgaattagcgagagttgaCTGTAATCA
GGGGCCTTATTTGCTGTAGACCCGGCGAACGGGGAATTTCGCCGGTTCAA
GGCACGAAAAAAGCTACAATTCGCTGTTCGAAAAGTTCGGTTCgccgcct
caagtacatatttacgctaatcaatacactgcgCTTCCTAAGAATTCACC
GACTTAGAGAATCTAGAAcatagttaatttttcattcgccagagttaatt
tttcattcgccagcctaccaaaacaaaggaaaaccCCCTGTGTAATGAAT
GTTAATTATCAGTCGTTAAAATCTTCCATTATGATAATTATTTCCTTATT
CCCCTATTTTCCAGGTTGACCAGGGATTCTGTTCTGCCAAGACGCTTTTC
ATTTCCGATTCCGACAAACGTAAATCCTTCATCATTTGTACGCGACTTAT
GTACCCCAACGGAAAATCGCTCGGTGTCTTTGAGTCGAGGAGGATAAAGG
TCAGTACTTATTattaatagcgaggttaagcacggaTTATTTTGGCCGTA
AAGTGCGAcccgttttttttttaccacaacTTTAGCATCCCAAATTTAAA
CATTTATCAGTTATCAGCTTAATCTGGTAATTATTTTATTACATCTCTTT
TTTAAATTAACGTGAGAACTGTTTTCAATCGGTTTATTCGTACCACACTA
CACTATGGCCTCACCTCGCCTCCCCTCGCCTCGGCTGAGCTCATCGTGGG
AATATCTGACAAATAATTTAATCCTTTCCATGAGTGTTTTCTCAAATACT
TCCATGATTAAATTAATAAGcattataagaacatcacaTAGAATGAGAgc
ttaatatttttataagaacatgaaaaataatttgttccATTCTCAGGTAA
TCTCCAAGCCGTCAAAGAAGAAACAGTCCTACAAAAACACGGAACGTAAG
TAACCTTTAAATCACATGTTAGTATTATATATGTTTATccgcagacacgt
gtttcgtTCATCCAGGGACTCATTAAATGCGGCTCTGGTAAGCGAGCATA
ATCTGCTGCTGTCACCACagtgctcaaaacactaagTGTTGAGCTTTCCA
TAATCGCTTTTAATCGCTCATAATTTGATCTCGCATTTGAAAACTGCCTT
GCCTGCTTTCCCAATCTTCCCACCCCGAACTATGAAAATGAAACCCTGAA
TTGATTTAAATGACGCCCGAAATGATCAGTCTAGTAACGCCCACCTCTGG
CGCTCCTTTCAATCTCAAAGCAGTTATCAAACCTCattcaaacaacaaaa
aattgtCAATGATTTTCCCAAACCGCGACTTCTCTCTGATGGGTGACAAA
GACAGGAAACTCTTAAAAGCGAAAACCACTTATTTTTTGCATCCACTAAA
TAATAAAGACAACCGTTAGATGGATGGCCCCTTGTAAAACTTTTCCCACG
CTTCTATATATCCGTGAGTCAGCCGGCGTTTGATTTATATCATGTTGcag
ttttttttgttattgttttgaaaaagtcaTTAACAATTACAGGTTATTTA
TAGCGATGTCTTTGTGTGTTTGTACAATCATTAGTGATTTTCCCACGATT
CTAAATACTCGTGTATTTTTTCCTCTCCTATCTCTTACTTACAACTTGAG
GTCTTTTTAGCCGTCAATCATTTCTTTTGATTCCGAATTTCcataaattt
tctttaaaaagaatccTCTTGAATTGCCTTAAAAGTCATCAAAAGATATC
GAATTGCTAAGGTTTTGTAAGGGAGCAACCGCTTATTTAGAAAACTAACT
GTTATTTTTCGTCTCTTGAAAAATTGTAATCTTTTCCCGACACAGTCACT
TTACTGTCTAAATCTCTCTAAATTCCCCTGGCCTTTTAACAGTTTGTACA
ACATCCAGCACATCGGTGGCATAATTCAACCTGATCCTCTAATTTCTAAA
GGCCGGTATCCACGTTCGCGCGAAATGGgaaacagtttttttcttaacct
tttttgcctgaagaaaagattacgtcataaaaaagtttcgcgcgaacgaa
aagaaagttgaaggaagttctacttttgttcacccgttacgtcaatttcg
accaatggaattgcttcatttttcaaccgaccaatgaccttacagaAACA
TCAGAAAGTtctcgctcatgtcgcgcgaaagtggagaccggccttaagct
TACAATCTTAAAGAACACttcgccaaaatttcgtcacttttccccgacga
agttttccccgataaggtatatcatCCGACACGACAGTTGCGTTATTCAA
CCTGAGACTCTGATTTCTAATTCTAAAATCTCAAAGGGCACTTCATGCTC
TTGTTTCAATGTTGAATTCATGATGCAATTTTTTCTACGGAAACTGTTCG
GTTTTAGCAAGTcatggcaaatttaaactagcgAAAAACTGTTTAAAATT
TGCCACTGCTGTCAAAAACCAGGGTGTGtcccgtagaaaacattacgtaa
tgaatatcGTAAATATCATTTCCCGCCTCTTTTTTCAGTATGTATATCAT
CCGGCACGACGGTGGCGTTATTCAACCGGTTACGTTCACAAACGGTCAGC
ACACGGTACCTCAACATCGAAGATACAGATGACAATAGAAGCAATTTTCG
CGCCTCATCACAACAATGGGGTGCATTCACTATTCATCTATGTAAGTAGA
GTAGAATCACTCTATCATCCGTCTAATTTGTCATGGGCCTACTTTTTTGA
AGACCATGCtatgagggtgtaaaaagtgaaaaattttcttcgtcgcgaca
ttttttttcaaggGGCCCATGTTTGTATATGATATAAGTATACAGTACAA
TCGCTCTCCATTTTGAGTTTATGAGCCTTCACATCACATCTTTGTAGGTT
TACCGTAGTATCTCTCTTACATCTATGTAAGGATACATCAGTTTTCTTAG
TTATTCATTATGCCACCCACCAcaataatttatgcaaattatGCCACTGC
AAGAGTAATTTATGCAAATTTATTCGTCTTTTCTGTCATATTTAGTGGAC
GACGAAGAAGAAGAGGGAGAAGAATTTTCAGTGCGCGACGGTTTCATTCA
TTACGGTCAAACTGTCAAACTAGTCTGTGTCCGCACACAACTCGCTCTCC
CTAGACTGGTTAGTATTGTTCTTACTCtaaggttccaaataaacggccct
cccgcttgttaatttttcgaaaattttccaaccataATCATGATTTACAA
ccaagaccatgttcagacgttacggttccgttccgttccgttccgaaacg
gttccgaaacaagtgtgaacgtcaaaaaagaagacgttacaaagcaaagt
AGATCGAAACgttttcgctccacttttttcatcggaacggaactgctctg
ttccgaaaccaatatgaacacactcgatccgcaACGAAAATCATGCCGGa
acgaaacggaacagtaacgtgtgaacatggtctaagagACTCCAGTGCAG
TGCAGCGTAGTCTTTTTCTCACTGGTTGTGAAATTATAATTAATCAgaat
tcaatattttcattttcaggtcATACGTAAAGTTGATAAACAACAAGTAT
CGATCGATGCAGATGATCCAGTTTCGCAACTCCATAAAGTCGCTTTCTAT
TTCAAAGACTCAGAAAGAATGTACCTTTGTTTATCTCAGGAGAAAATTAT
TCAATTTCAGGTGAGTGACATGCAAGGCCCTGCACGTTTTCTATTACGTT
TGGAAGTTTTTTTCTACACGAAAAGTGGACAAAGTTTTTGGAATTTATCC
TTTGTAGCAGTCCCATTCCCAGAAATTTAGTAACATAAGTCGATTAAATT
TTGCGTGAATTATTTTTCGCGGTTTTCTTGCATTTCTTCTATTTTTGCGA
AAGTAAAAACTCGGGAAATCAAGTGAGATTGCTGACTCGCGAAATCAAAT
CAAACCGAGATTTTCGAAATGACTTTTTTAGCCTGAAATACAGTGTAAAT
CTGCTATTCAAGACGTTCTCTACAAAATGTtggctgattttcgcgaaata
aTATAAATCAAGGCAATTTCGCGATCTTTTTGGCTCGTGAAATTGAAGCA
AAAGTAAATTCCATTAACTCATTTCAAACTTGCAATCCGCTCTCTTCTTA
ACAGGCAACGCAATGTCCAAAAGACCCGAAGAAGGAAATGATTACAGACG
GAGCTTCCTGGACCATCATCAGTACTGGTGAGTTTTGTATATCTATCTAC
CGGGTGTTATGCATCTCGTTGATACTGTATTTACGGCTATCCAAAAGTTC
GCTCaacaatcaaattcaaatgaaaacatttcctctgaaaatgaaaattc
ccgAATAATCTCAAGAGACGAACCAAGCTTTTTATCGTTGCTAACATTAT
ATATTTTGGAATGTTGCTTTCAAAATCTTTACTTTTTTGTCATAGATAAA
GCGGAGTATTCATTTTGCGAGGGTGCTGGCCCTGTGTCCGACCCTGTGAC
GCCGGTGCCCACAGTGAGGGCCATGCAGTTGAACGGAGGTGGTGACGTTG
CCATGATTGAGCTGAAGGGAGAGAATTTCCAAGCCGTCATGAAAGTCTGG
TTTGCCGATGTTGAAGCAGACACTTACTATCGGTGAGCTCTTCTACCTCT
TTAAGTAATTCATGGTATGAACCAATCTAACGACTTCACTCAGCAATAGA
CTTACAAATAACTTTGCTGGTTTTctacccaatacgtcacttgtaACCAA
TCAACTGTTCTAAAGGGGTTGTAATGTCGGAAAAACCGGATTTACGAATA
GCCTACTTTTAGAAGATCATTTAGGCCCGTCATCTTAAGTCCATATAGAT
GACTCAATGTATacactagactagagtctacttgaCTAGACTAGAGTTCA
GTGCAGTAGACTAGCACGccagtttgaaagaaaaacaaagatgaCAGTTC
GATTGTCTTTCTGGTTTTATGATGGgctgtttttttatataattgtCAAT
TTATATTCTTTGCCACCATATAcctattttttgactttgtgaaGAGTTCG
GATAAATTAAAGGCCAGTAAATAAATCTGCATTTCAAAAATGGACTTTCA
AACTTTACTTCAGTTGTTTAAAACATCTTTCCGCTCTTCTTCTTTCAGAT
GTTCCGAATGTATTATCGCTGTAGTACCAGATATTCGTTCATTTCCGGAA
GGTCGCGAAGATCCGCGTACGAAACTGACGGTACCAGTCTCGTTGGTCCG
ACATGACGGCGTCATTTATCCGACGGGATTGAATTTTGCGTACACTCCGG
AACCATTGGAGCTCATTGAGATGGCGATGCGGAGCCGTGAGATGTATCAT
CAACCTCGATGAAGAAACGTCATGGTGAAGGTCTTATTCAAGAATGGTGT
TTGGTGGGCGTTGGCGGTGCTTGTATTCACGCCCTAAACTCACGCCCATG
GTGTTGACACGGGATTGCTGCATATGGTGCTTCACGTATTGTTTTGTGTT
AAACAGAATTGTTATTCAAAAGTTTTGCATGGGCCGTGCTGGTATCCACG
CCTTAATTTGCGTTGATAAGGGTAGATGTGACATTCACATGTTTATTGAT
ACGGTGTGGGTGGATCACGATTCAGATCATTGTAACACAATCAAGCAAGC
ACTGAAGGTGTACCGTAGAAGACTCGATACTTTGATATCATCTACATGCG
ACGGGAGATTCTTCAACTCCGTAAGCTGCGCTCTCTGACTTGTGAGCTGT
GATGTCTTTTTTACGTTAGACAAGCACCCTATTTTCTGTGAGAGAGGAGC
GATGTTCTTCCAAGCTGTTCTACTCGTTCGCTCGTATTTTCTCGTCGGAA
AGGATCACACATGGTGTGAAAAGCTTTTCTCTGTACACCCAGCCTGCAGT
CAAAAAACATTTGGAGGTGTTAGTCTTTTTCTTAATCATAATATTGTTGC
TGatttttgttgttgaagagAAGAGCGAAGAGAGAAGAATGCTGGCTCGT
TTTTCTCCTTCCCAGCATCTCAAATTATaactgacgtcagcagaaaatgA
CAACACTCAAATGAACATTTTATCATTCAAGAAATTGTAGAAATCTATTC
ATTCTCGTAATAACAAGGTGTATTTTCCTTAGCAACTAGGGTTATTTTCC
TTGGCAACCGTCGTTAAGGGATAATGGCAGGTTTCAAATTGAAACtaagt
tattttttttaattatcagtGTTTTTGTACTGATTTTTTTCCTTCCAGGT
TTTTCGTTCCTCTTTTATATAATGAAACACGACTTGAATTTTTCGAACAT
CGACGCTTCTGGTGGTGTTAGGTAGATGAAATGTTTTCAACAGAAGCAAA
TAAAGCCTTGTCACATAAAGTATAATGTACAaagtattcaaaaattttcc
tttcgAACTTAGTCTTTTGGGGAAACACTcttagcccggggggggggtac
ttaggcaaaaataggtgctgggtatgtgcggacggtaagggtagggtttt
tcacctttcaaagtctctctaagggttacaaaaatcaggaaatttcaaag
tagtctctctaagggtgggaaaaacacgatttttagaacaaaattttgat
tttgagagaaaaaattacaaaaaagagtaagggtaggaaatttttgaaaa
tcagagaaaatttttcgaaaaagtctctctaagggtcactttttcactaa
aatttggtctctctaagtaagggtcggttttcggaggtcccgtccgcaca
tacccctcatttaccaaccctagtaccccccccccgggactcttagtaac
aaaaaaacaaattatgaaATACGAAGAAAATGTAGAACcaaattattatt
gttattgattaTTATTTGTTGATTGTTTTTGTATAATAGAAAGATTTAAT
AATTATTCTAACAACAGACACACACTAGACtctactctctctctctctct
ctctctctctctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034691XLOC_034691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055066-exon-scaffold_249-1491911889:32468..32534TCONS_00055066-exon-scaffold_249-1491911889:32468..32534Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:32468..32534TCONS_00055066-exon-scaffold_249-1510915933:32468..32534Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:32468..32534TCONS_00055066-exon-scaffold_249-1575043694:32468..32534Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:33078..33264TCONS_00055066-exon-scaffold_249-1491911889:33078..33264Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:33078..33264TCONS_00055066-exon-scaffold_249-1510915933:33078..33264Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:33078..33264TCONS_00055066-exon-scaffold_249-1575043694:33078..33264Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:33806..33990TCONS_00055066-exon-scaffold_249-1491911889:33806..33990Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:33806..33990TCONS_00055066-exon-scaffold_249-1510915933:33806..33990Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:33806..33990TCONS_00055066-exon-scaffold_249-1575043694:33806..33990Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:34898..35106TCONS_00055066-exon-scaffold_249-1491911889:34898..35106Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:34898..35106TCONS_00055066-exon-scaffold_249-1510915933:34898..35106Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:34898..35106TCONS_00055066-exon-scaffold_249-1575043694:34898..35106Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:38532..38666TCONS_00055066-exon-scaffold_249-1491911889:38532..38666Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:38532..38666TCONS_00055066-exon-scaffold_249-1510915933:38532..38666Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:38532..38666TCONS_00055066-exon-scaffold_249-1575043694:38532..38666Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:39064..39112TCONS_00055066-exon-scaffold_249-1491911889:39064..39112Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:39064..39112TCONS_00055066-exon-scaffold_249-1510915933:39064..39112Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:39064..39112TCONS_00055066-exon-scaffold_249-1575043694:39064..39112Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:40706..40858TCONS_00055066-exon-scaffold_249-1491911889:40706..40858Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:40706..40858TCONS_00055066-exon-scaffold_249-1510915933:40706..40858Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:40706..40858TCONS_00055066-exon-scaffold_249-1575043694:40706..40858Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:41213..41325TCONS_00055066-exon-scaffold_249-1491911889:41213..41325Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:41213..41325TCONS_00055066-exon-scaffold_249-1510915933:41213..41325Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:41213..41325TCONS_00055066-exon-scaffold_249-1575043694:41213..41325Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:41737..41877TCONS_00055066-exon-scaffold_249-1491911889:41737..41877Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:41737..41877TCONS_00055066-exon-scaffold_249-1510915933:41737..41877Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:41737..41877TCONS_00055066-exon-scaffold_249-1575043694:41737..41877Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:42322..42394TCONS_00055066-exon-scaffold_249-1491911889:42322..42394Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:42322..42394TCONS_00055066-exon-scaffold_249-1510915933:42322..42394Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:42322..42394TCONS_00055066-exon-scaffold_249-1575043694:42322..42394Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:42613..42799TCONS_00055066-exon-scaffold_249-1491911889:42613..42799Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:42613..42799TCONS_00055066-exon-scaffold_249-1510915933:42613..42799Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:42613..42799TCONS_00055066-exon-scaffold_249-1575043694:42613..42799Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1491911889:43316..45130TCONS_00055066-exon-scaffold_249-1491911889:43316..45130Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1510915933:43316..45130TCONS_00055066-exon-scaffold_249-1510915933:43316..45130Clytia hemisphaericaexon
TCONS_00055066-exon-scaffold_249-1575043694:43316..45130TCONS_00055066-exon-scaffold_249-1575043694:43316..45130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:32468..45130 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.94223e-06	0	0.00230484	5.724e-10	0.305733	0	0	0	1.33157	0.400103	0.69219	0.329418	0	0	1.18269	2.25052	0	1.36694e-05	1.74714	0	4.04635e-08	1.69193e-08	1.98819e-10	0	0	0
Blast
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BLAST of TCONS_00055066 vs. Swiss-Prot (Human)
Match: SUH (Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3)

HSP 1 Score: 535.413 bits (1378), Expect = 2.855e-178
Identity = 282/456 (61.84%), Postives = 338/456 (74.12%), Query Frame = 1 
Query:  289 PTQALSREQMQRYLRERDHETVVVLHARVAQKSYGNEKRFFCPPPSLYLKGKGWNKRRDRHVAESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLYPHALVYIGPSEHPLMQQLTFEEKVDQGFCSAKTLFISDSDKRKSFIICTRLMYPNGKSLGVFESRRIKVISKPSKKKQSYKNTELCISSGTTVALFNRLRSQTVSTRYLNIEDTDDNRSNFRASSQQWGAFTIHLLDDXXXXXXXFSVRDGFIHYGQTVKLVCVRTQLALPRLVIRKVDKQQVSIDADDPVSQLHKVAFYFKDSERMYLCLSQEKIIQFQATQCPKDPKKEMITDGASWTIISTDKAEYSFCEGAGXXXXXXXXXXXXRAMQLNGGGDVAMIELKGENFQAVMKVWFADVEADTYYRCSECIIAVVPDIRSFPEGREDPRTKLTVPVSLVRHDGVIYPTGLNFAYTPEP 1656
            P + L+RE M+ YL+ER  +TV++LHA+VAQKSYGNEKRFFCPPP +YL G GW K++++   +  + + +                          P A + IG S+   MQQL  E K    +C+AKTL+ISDSDKRK F++  ++ Y N   +GVF S+RIKVISKPSKKKQS KN +LCI+SGT VALFNRLRSQTVSTRYL++E       NF ASSQQWGAF IHLLDD+E EGEEF+VRDG+IHYGQTVKLVC  T +ALPRL+IRKVDKQ   +DADDPVSQLHK AFY KD+ERMYLCLSQE+IIQFQAT CPK+P KEMI DGASWTIISTDKAEY+F EG GPV  PVTPVP V ++QLNGGGDVAM+EL G+NF   ++VWF DVEA+T YRC E ++ VVPDI +F EG    R  + VPV+LVR+DG+IY T L F YTPEP
Sbjct:   27 PPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQ-------------------------PCAFIGIGNSDQE-MQQLNLEGK---NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG-----GNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEP 448
The following BLAST results are available for this feature:
BLAST of TCONS_00055066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUH2.855e-17861.84Recombining binding protein suppressor of hairless... [more]
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